Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0635 Trochodendron aralioides HOM05D002007 ORTHO05D005759 3.6e-70 268.1 130 100.0
TAR629G0178 Trochodendron aralioides HOM05D002007 ORTHO05D005759 1.2e-22 110.2 61 86.9
Nn1g09291 Nelumbo nucifera HOM05D002007 ORTHO05D005759 5.1e-16 88.2 63 63.5
PSO782G5315 Papaver somniferum HOM05D002007 ORTHO05D005759 5.1e-16 88.2 61 63.9
Aqoxy3G01987 Aquilegia oxysepala HOM05D002007 ORTHO05D005759 9.6e-15 84.0 61 60.7
FAN04G2167 Fragaria x ananassa HOM05D002007 ORTHO05D005759 5.3e-13 78.2 66 56.1
FvH4_5g24680 Fragaria vesca HOM05D002007 ORTHO05D005759 6.9e-13 77.8 66 54.5
FAN13G3190 Fragaria x ananassa HOM05D002007 ORTHO05D005759 6.9e-13 77.8 66 54.5
FAN18G3178 Fragaria x ananassa HOM05D002007 ORTHO05D005759 6.9e-13 77.8 66 54.5
ATR0568G058 Amborella trichopoda HOM05D002007 ORTHO05D005759 9.0e-13 77.4 54 68.5
Nn3g19126 Nelumbo nucifera HOM05D002007 ORTHO05D005759 9.0e-13 77.4 61 57.4
FAN08G1950 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.0e-12 76.3 66 54.5
FAN13G3232 Fragaria x ananassa HOM05D002007 ORTHO05D005759 2.6e-12 75.9 66 53.0
TWI32G1199 Tripterygium wilfordii HOM05D002007 ORTHO05D005759 7.6e-12 74.3 64 50.0
CANSAT35G0197 Cannabis sativa HOM05D002007 ORTHO05D005759 1.3e-11 73.6 64 56.2
ClCG07G011150 Citrullus lanatus HOM05D002007 ORTHO05D005759 1.3e-11 73.6 57 59.6
Haze_08040 Corylus avellana HOM05D002007 ORTHO05D005759 1.3e-11 73.6 57 57.9
Haze_08050 Corylus avellana HOM05D002007 ORTHO05D005759 1.3e-11 73.6 57 57.9
Prupe.5G014700 Prunus persica HOM05D002007 ORTHO05D005759 1.3e-11 73.6 61 60.7
CsaV3_4G007100 Cucumis sativus L. HOM05D002007 ORTHO05D005759 3.8e-11 72.0 57 57.9
RcHm_v2.0_Chr7g0215061 Rosa chinensis HOM05D002007 ORTHO05D005759 3.8e-11 72.0 66 51.5
QL12p003360 Quercus lobata HOM05D002007 ORTHO05D005759 4.9e-11 71.6 57 56.1
DCAR_030946 Daucus carota HOM05D002007 ORTHO05D005759 1.1e-10 70.5 54 57.4
HanXRQChr08g0227001 Helianthus annuus HOM05D002007 ORTHO05D005759 1.1e-10 70.5 54 57.4
QL12p003363 Quercus lobata HOM05D002007 ORTHO05D005759 1.1e-10 70.5 57 57.9
Dinv09412 Davidia involucrata HOM05D002007 ORTHO05D005759 1.9e-10 69.7 64 48.4
Solyc08g075230.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 1.9e-10 69.7 54 53.7
Sopen08g023830 Solanum pennellii HOM05D002007 ORTHO05D005759 1.9e-10 69.7 54 53.7
PGSC0003DMG400001950 Solanum tuberosum HOM05D002007 ORTHO05D005759 1.9e-10 69.7 54 53.7
Rhsim11G0038300 Rhododendron simsii HOM05D002007 ORTHO05D005759 2.4e-10 69.3 54 57.4
RhsimUnG0122600 Rhododendron simsii HOM05D002007 ORTHO05D005759 2.4e-10 69.3 54 57.4
CAN.G947.27 Capsicum annuum HOM05D002007 ORTHO05D005759 3.2e-10 68.9 54 55.6
Peaxi162Scf01644g00002 Petunia axillaris HOM05D002007 ORTHO05D005759 3.2e-10 68.9 54 51.9
Glyma.09G217800 Glycine max HOM05D002007 ORTHO05D005759 4.2e-10 68.6 61 54.1
MD06G1012000 Malus domestica HOM05D002007 ORTHO05D005759 4.2e-10 68.6 61 52.5
THA.LOC104811158 Tarenaya hassleriana HOM05D002007 ORTHO05D005759 4.2e-10 68.6 65 53.8
Cpa.g.sc579.3 Carica papaya HOM05D002007 ORTHO05D005759 5.4e-10 68.2 57 57.9
Sed0024576 Sechium edule HOM05D002007 ORTHO05D005759 5.4e-10 68.2 89 46.1
Medtr8g072140 Medicago truncatula HOM05D002007 ORTHO05D005759 7.1e-10 67.8 82 47.6
Nitab4.5_0010692g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 7.1e-10 67.8 54 55.6
Oeu014069.1 Olea europaea HOM05D002007 ORTHO05D005759 7.1e-10 67.8 54 55.6
Phvul.003G277900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 7.1e-10 67.8 61 52.5
Actinidia32796 Actinidia chinensis HOM05D002007 ORTHO05D005759 9.3e-10 67.4 61 52.5
arahy.Tifrunner.gnm1.ann1.D5KL38 Arachis hypogaea HOM05D002007 ORTHO05D000355 9.3e-10 67.4 61 52.5
arahy.Tifrunner.gnm1.ann1.WWV1B2 Arachis hypogaea HOM05D002007 ORTHO05D005759 9.3e-10 67.4 61 52.5
Sed0024497 Sechium edule HOM05D002007 ORTHO05D005759 9.3e-10 67.4 64 50.0
Sc07g0008110 Simmondsia chinensis HOM05D002007 ORTHO05D005759 9.3e-10 67.4 63 47.6
CiPaw.05G148700 Carya illinoinensis HOM05D002007 ORTHO05D005759 1.2e-09 67.0 57 54.4
VMungo1215G3059 Vigna mungo HOM05D002007 ORTHO05D005759 1.2e-09 67.0 61 50.8
Nitab4.5_0000943g0020 Nicotiana tabacum HOM05D002007 ORTHO05D005759 1.6e-09 66.6 54 53.7
Peaxi162Scf00876g00032 Petunia axillaris HOM05D002007 ORTHO05D005759 1.6e-09 66.6 61 45.9
VMungo0251G0075 Vigna mungo HOM05D002007 ORTHO05D005759 1.6e-09 66.6 61 50.8
CAN.G514.11 Capsicum annuum HOM05D002007 ORTHO05D005759 2.1e-09 66.2 54 53.7
Lj4g0014196 Lotus japonicus HOM05D002007 ORTHO05D000355 2.1e-09 66.2 61 54.1
CiPaw.06G072700 Carya illinoinensis HOM05D002007 ORTHO05D005759 2.7e-09 65.9 57 52.6
Ciclev10003495m.g Citrus clementina HOM05D002007 ORTHO05D005759 2.7e-09 65.9 57 54.4
Glyma.16G108200 Glycine max HOM05D002007 ORTHO05D005759 2.7e-09 65.9 61 52.5
Gohir.A05G288800 Gossypium hirsutum HOM05D002007 ORTHO05D005759 2.7e-09 65.9 58 51.7
Gorai.009G305100 Gossypium raimondii HOM05D002007 ORTHO05D005759 2.7e-09 65.9 58 51.7
MBI04_g30804_MAGBIO Magnolia biondii HOM05D002007 ORTHO05D005759 2.7e-09 65.9 61 47.5
MD16G1286800 Malus domestica HOM05D002007 ORTHO05D005759 2.7e-09 65.9 57 56.1
Ca_22461_v3 Cicer arietinum L. HOM05D002007 ORTHO05D005759 3.5e-09 65.5 61 54.1
ECA240G4318 Erigeron canadensis HOM05D002007 ORTHO05D000355 3.5e-09 65.5 54 55.6
Nitab4.5_0000236g0050 Nicotiana tabacum HOM05D002007 ORTHO05D005759 3.5e-09 65.5 61 47.5
Oeu057154.1 Olea europaea HOM05D002007 ORTHO05D005759 3.5e-09 65.5 61 47.5
PGR042G3326 Punica granatum HOM05D002007 ORTHO05D005759 3.5e-09 65.5 54 59.3
TPR.G7868 Trifolium pratense HOM05D002007 ORTHO05D005759 4.6e-09 65.1 61 52.5
Nitab4.5_0005896g0010 Nicotiana tabacum HOM05D002007 ORTHO05D005759 6.0e-09 64.7 61 45.9
Actinidia01243 Actinidia chinensis HOM05D002007 ORTHO05D005759 7.8e-09 64.3 54 55.6
PGSC0003DMG400029286 Solanum tuberosum HOM05D002007 ORTHO05D005759 7.8e-09 64.3 54 48.1
CDE02G4391 Ceratophyllum demersum HOM05D002007 ORTHO05D005759 1.0e-08 63.9 53 52.8
TPR.G11463 Trifolium pratense HOM05D002007 ORTHO05D005759 1.0e-08 63.9 54 57.4
Eucgr.E01156 Eucalyptus grandis HOM05D002007 ORTHO05D005759 1.3e-08 63.5 75 46.7
Thecc.03G321300 Theobroma cacao HOM05D002007 ORTHO05D005759 1.3e-08 63.5 57 50.9
HPP92_022745 Vanilla planifolia HOM05D002007 ORTHO05D005759 1.3e-08 63.5 75 42.7
Atru.chr6.2147 Acer truncatum HOM05D002007 ORTHO05D005759 1.7e-08 63.2 54 55.6
arahy.Tifrunner.gnm1.ann1.R12JL5 Arachis hypogaea HOM05D002007 ORTHO05D005759 1.7e-08 63.2 64 48.4
arahy.Tifrunner.gnm1.ann1.TCKY6I Arachis hypogaea HOM05D002007 ORTHO05D005759 1.7e-08 63.2 64 48.4
Gorai.004G176700 Gossypium raimondii HOM05D002007 ORTHO05D005759 2.3e-08 62.8 58 50.0
HanXRQChr03g0082821 Helianthus annuus HOM05D002007 ORTHO05D005759 2.3e-08 62.8 64 50.0
Psat4g108400 Pisum sativum HOM05D002007 ORTHO05D005759 2.3e-08 62.8 61 52.5
Gohir.A08G148400 Gossypium hirsutum HOM05D002007 ORTHO05D005759 3.0e-08 62.4 58 50.0
Oeu011637.1 Olea europaea HOM05D002007 ORTHO05D005759 3.0e-08 62.4 53 50.9
Sopen12g032050 Solanum pennellii HOM05D007367 ORTHO05D008866 3.0e-08 62.4 54 50.0
HPP92_022732 Vanilla planifolia HOM05D002007 ORTHO05D005759 3.0e-08 62.4 75 42.7
Cc08_g06070 Coffea canephora HOM05D002007 ORTHO05D005759 3.9e-08 62.0 54 57.4
Lj2g0009290 Lotus japonicus HOM05D002007 ORTHO05D005759 3.9e-08 62.0 55 56.4
Solyc12g096180.1 Solanum lycopersicum HOM05D002007 ORTHO05D005759 3.9e-08 62.0 54 48.1
Lalb_Chr05g0229301 Lupinus albus HOM05D002007 ORTHO05D005759 5.1e-08 61.6 63 47.6
Gohir.D08G169500 Gossypium hirsutum HOM05D002007 ORTHO05D005759 6.6e-08 61.2 58 48.3
Psat0s1099g0040 Pisum sativum HOM05D002007 ORTHO05D005759 6.6e-08 61.2 61 50.8
EL10Ac5g11944 Beta vulgaris HOM05D002007 ORTHO05D005759 8.7e-08 60.8 61 45.9
Glyma.01G152600 Glycine max HOM05D002007 ORTHO05D005759 8.7e-08 60.8 61 50.8
Gohir.A12G200900 Gossypium hirsutum HOM05D002007 ORTHO05D005759 8.7e-08 60.8 65 46.2
HanXRQChr13g0412731 Helianthus annuus HOM05D002007 ORTHO05D005759 8.7e-08 60.8 54 57.4
Lalb_Chr05g0215211 Lupinus albus HOM05D002007 ORTHO05D005759 8.7e-08 60.8 61 49.2
Duzib205G1662 Durio zibethinus HOM05D002007 ORTHO05D005759 1.1e-07 60.5 57 47.4
Sp2g10270 Schrenkiella parvula HOM05D002007 ORTHO05D005759 1.1e-07 60.5 54 51.9
vmacro00104 Vaccinium macrocarpon HOM05D002007 ORTHO05D005759 1.1e-07 60.5 54 51.9
Gohir.D12G203700 Gossypium hirsutum HOM05D002007 ORTHO05D005759 1.5e-07 60.1 65 46.2
Gorai.008G218500 Gossypium raimondii HOM05D002007 ORTHO05D005759 1.5e-07 60.1 65 46.2
Manes.10G095600 Manihot esculenta HOM05D002007 ORTHO05D005759 1.5e-07 60.1 53 49.1
Phvul.002G122900 Phaseolus vulgaris HOM05D002007 ORTHO05D005759 1.5e-07 60.1 61 49.2
BcaB07g30461 Brassica carinata HOM05D002007 ORTHO05D005759 1.9e-07 59.7 61 49.2
ECA233G2534 Erigeron canadensis HOM05D002007 ORTHO05D005759 1.9e-07 59.7 54 48.1
SalBow4G0822 Salvia bowleyana HOM05D002007 ORTHO05D000355 2.5e-07 59.3 62 43.5
SHI32759 Sapria himalayana HOM05D002007 ORTHO05D005759 2.5e-07 59.3 54 48.1
BcaC03g14419 Brassica carinata HOM05D002007 ORTHO05D005759 3.3e-07 58.9 80 37.5
BcaC03g16740 Brassica carinata HOM05D002007 ORTHO05D005759 3.3e-07 58.9 61 47.5
A02p29030 Brassica napus HOM05D002007 ORTHO05D005759 3.3e-07 58.9 61 47.5
C02p46130 Brassica napus HOM05D002007 ORTHO05D005759 3.3e-07 58.9 61 47.5
BraA02t07935Z Brassica rapa HOM05D002007 ORTHO05D005759 3.3e-07 58.9 61 47.5
COL.COLO4_16737 Corchorus olitorius HOM05D002007 ORTHO05D005759 3.3e-07 58.9 56 46.4
Duzib068G0709 Durio zibethinus HOM05D002007 ORTHO05D005759 3.3e-07 58.9 64 40.6
Migut.A00477 Erythranthe guttata HOM05D002007 ORTHO05D005759 4.3e-07 58.5 53 50.9
Carub.0008s0281 Capsella rubella HOM05D002007 ORTHO05D005759 5.6e-07 58.2 61 49.2
Lsat_1_v5_gn_6_16960 Lactuca sativa HOM05D002007 ORTHO05D005759 5.6e-07 58.2 54 50.0
Lsat_1_v5_gn_6_74040 Lactuca sativa HOM05D002007 ORTHO05D005759 5.6e-07 58.2 62 46.8
Manes.07G043400 Manihot esculenta HOM05D002007 ORTHO05D005759 5.6e-07 58.2 53 45.3
BolC2t10670H Brassica oleracea HOM05D002007 ORTHO05D005759 7.3e-07 57.8 61 45.9
Oeu023064.1 Olea europaea HOM05D002007 ORTHO05D005759 7.3e-07 57.8 53 47.2
AT5G45320 Arabidopsis thaliana HOM05D002007 ORTHO05D005759 1.6e-06 56.6 61 45.9
C02p18330 Brassica napus HOM05D002007 ORTHO05D005759 1.6e-06 56.6 63 42.9
BcaC06g31560 Brassica carinata HOM05D002007 ORTHO05D005759 2.1e-06 56.2 63 42.9
BcaC06g34446 Brassica carinata HOM05D002007 ORTHO05D005759 2.1e-06 56.2 64 45.3
A06p46680 Brassica napus HOM05D002007 ORTHO05D005759 2.1e-06 56.2 64 45.3
C07p28350 Brassica napus HOM05D002007 ORTHO05D005759 2.1e-06 56.2 64 45.3
BolC7t43375H Brassica oleracea HOM05D002007 ORTHO05D005759 2.1e-06 56.2 64 45.3
BraA06t27540Z Brassica rapa HOM05D002007 ORTHO05D005759 2.1e-06 56.2 64 45.3
Thhalv10001032m.g Eutrema salsugineum HOM05D002007 ORTHO05D005759 3.6e-06 55.5 54 46.3
Potri.003G046000 Populus trichocarpa HOM05D002007 ORTHO05D005759 4.8e-06 55.1 53 49.1
CARHR176770 Cardamine hirsuta HOM05D002007 ORTHO05D005759 8.1e-06 54.3 61 45.9


User provided reference genes

Program Settings