Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.8e-76 288.5 141 100.0
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 7.9e-23 110.9 63 82.5
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.3e-22 109.4 63 79.4
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.0e-22 109.0 63 79.4
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.9e-22 108.6 63 79.4
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 3.9e-22 108.6 63 81.0
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 5.1e-22 108.2 63 77.8
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 8.8e-22 107.5 63 77.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 1.5e-21 106.7 65 75.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 3.3e-21 105.5 63 77.8
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 4.4e-21 105.1 63 76.2
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.4e-21 105.1 79 62.0
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 4.4e-21 105.1 63 79.4
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 4.4e-21 105.1 65 75.4
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 5.7e-21 104.8 63 76.2
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.7e-21 104.0 63 77.8
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.3e-20 103.6 71 69.0
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.3e-20 103.6 60 76.7
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.3e-20 103.6 60 76.7
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-20 103.2 73 65.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.7e-20 103.2 63 77.8
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 1.7e-20 103.2 72 69.4
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.2e-20 102.8 63 79.4
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 2.2e-20 102.8 68 67.6
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 3.7e-20 102.1 71 67.6
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 3.7e-20 102.1 63 77.8
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 3.7e-20 102.1 86 62.8
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 3.7e-20 102.1 63 76.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.8e-20 101.7 60 73.3
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 6.3e-20 101.3 63 74.6
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 6.3e-20 101.3 65 72.3
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.3e-20 101.3 65 72.3
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 6.3e-20 101.3 65 72.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 6.3e-20 101.3 60 75.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 8.2e-20 100.9 65 72.3
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 8.2e-20 100.9 63 73.0
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 1.4e-19 100.1 63 73.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.8e-19 99.8 63 76.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.4e-19 99.4 61 73.8
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 2.4e-19 99.4 63 71.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 2.4e-19 99.4 64 70.3
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 3.1e-19 99.0 63 73.0
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.1e-19 99.0 63 68.3
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 4.1e-19 98.6 66 71.2
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 4.1e-19 98.6 63 68.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.1e-19 98.6 63 68.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.3e-19 98.2 63 71.4
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 5.3e-19 98.2 60 73.3
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 5.3e-19 98.2 69 63.8
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.3e-19 98.2 63 73.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.9e-19 97.8 63 73.0
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.9e-19 97.8 69 66.7
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.9e-19 97.8 64 70.3
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 6.9e-19 97.8 86 57.0
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 1.2e-18 97.1 64 68.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.5e-18 96.7 63 69.8
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.0e-18 96.3 59 76.3
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.0e-18 96.3 88 58.0
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 2.6e-18 95.9 62 74.2
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.6e-18 95.9 60 73.3
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.6e-18 95.9 59 76.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.6e-18 95.9 59 76.3
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 2.6e-18 95.9 66 66.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.4e-18 95.5 63 68.3
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.4e-18 95.5 60 71.7
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 4.5e-18 95.1 64 71.9
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 5.9e-18 94.7 63 71.4
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 5.9e-18 94.7 60 73.3
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 5.9e-18 94.7 72 62.5
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.0e-17 94.0 63 71.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.0e-17 94.0 63 68.3
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.3e-17 93.6 69 65.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.7e-17 93.2 62 71.0
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.7e-17 93.2 70 61.4
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 1.7e-17 93.2 63 66.7
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.2e-17 92.8 63 69.8
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 2.2e-17 92.8 63 65.1
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 3.8e-17 92.0 63 63.5
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 3.8e-17 92.0 63 68.3
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.8e-17 92.0 63 66.7
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 3.8e-17 92.0 63 66.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 5.0e-17 91.7 64 70.3
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 6.5e-17 91.3 63 65.1
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 8.5e-17 90.9 60 70.0
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 8.5e-17 90.9 63 66.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.1e-16 90.5 59 72.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.4e-16 90.1 60 66.7
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.4e-16 90.1 60 66.7
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 1.4e-16 90.1 65 66.2
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.4e-16 90.1 62 67.7
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.4e-16 90.1 64 67.2
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.9e-16 89.7 63 65.1
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 2.5e-16 89.4 66 63.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.2e-16 89.0 62 64.5
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.2e-16 89.0 63 66.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 9.4e-16 87.4 65 67.7
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.2e-15 87.0 65 64.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.6e-15 86.7 63 69.8
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.6e-15 85.5 65 66.2
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 4.7e-15 85.1 63 60.3
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 4.7e-15 85.1 65 67.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.7e-15 85.1 58 67.2
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 6.1e-15 84.7 65 66.2
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.0e-14 84.0 63 60.3
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.0e-14 82.4 64 59.4
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.0e-14 82.4 64 57.8
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.9e-14 82.0 63 61.9
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.7e-14 81.3 59 66.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.1e-13 80.5 59 61.0
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.5e-13 80.1 60 58.3
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.0e-13 79.7 117 39.3
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.3e-13 79.0 63 60.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-12 77.0 60 63.3
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 1.3e-12 77.0 60 63.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 1.3e-12 77.0 60 63.3
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.3e-12 77.0 60 61.7
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.7e-12 76.6 59 57.6
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.8e-12 75.9 60 61.7
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 2.8e-12 75.9 60 61.7
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.7e-12 75.5 60 61.7
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.7e-12 75.5 45 73.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 4.8e-12 75.1 60 60.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-12 75.1 66 51.5
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 6.3e-12 74.7 60 60.0
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 6.3e-12 74.7 60 60.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 6.3e-12 74.7 46 76.1
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.8e-11 73.2 60 60.0
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-11 72.8 60 60.0
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 9.1e-11 70.9 51 62.7
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 9.1e-11 70.9 75 46.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.0e-10 69.7 45 68.9
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 2.6e-10 69.3 90 42.2
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 7.7e-10 67.8 44 68.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 3.8e-09 65.5 46 60.9
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 5.0e-09 65.1 46 63.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 6.5e-09 64.7 46 63.0
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.5e-08 63.5 56 50.0
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 7.2e-08 61.2 57 47.4
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.7e-07 59.3 46 63.0
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.7e-07 58.5 46 63.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.3e-06 56.2 41 56.1


User provided reference genes

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