Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.2e-60 235.3 111 100.0
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 2.1e-58 228.8 109 98.2
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.5e-56 222.6 109 94.5
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 3.3e-56 221.5 109 91.7
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 3.3e-56 221.5 109 94.5
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 9.5e-56 219.9 109 93.6
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 1.6e-55 219.2 109 92.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 3.6e-55 218.0 109 90.8
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.6e-55 218.0 109 90.8
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 4.7e-55 217.6 109 91.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 4.7e-55 217.6 109 90.8
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 90.8
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 90.8
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 91.7
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 91.7
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 90.8
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 6.2e-55 217.2 109 91.7
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 8.1e-55 216.9 109 90.8
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 8.1e-55 216.9 109 89.9
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 8.1e-55 216.9 109 90.8
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 8.1e-55 216.9 109 90.8
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 89.9
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 89.9
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 90.8
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 90.8
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 90.8
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.1e-54 216.5 109 91.7
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.4e-54 216.1 109 89.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-54 215.7 109 90.8
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.8e-54 215.7 109 90.8
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.8e-54 215.7 109 90.8
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 1.8e-54 215.7 109 91.7
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 1.8e-54 215.7 109 89.0
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.4e-54 215.3 109 89.9
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.4e-54 215.3 109 90.8
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.1e-54 214.9 109 89.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 3.1e-54 214.9 109 89.9
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.0
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.9
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.0
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.9
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.0e-54 214.5 109 89.9
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 5.2e-54 214.2 109 89.0
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 5.2e-54 214.2 109 90.8
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 5.2e-54 214.2 109 87.2
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.8e-54 213.8 109 89.0
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 6.8e-54 213.8 109 89.0
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 6.8e-54 213.8 109 89.0
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.8e-54 213.8 109 89.0
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.8e-54 213.8 109 89.9
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 8.9e-54 213.4 109 88.1
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 8.9e-54 213.4 109 89.0
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 8.9e-54 213.4 109 89.0
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 8.9e-54 213.4 109 89.0
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.2e-53 213.0 107 90.7
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.2e-53 213.0 107 90.7
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.2e-53 213.0 109 89.0
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.2e-53 213.0 108 89.8
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 1.2e-53 213.0 109 88.1
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 1.2e-53 213.0 109 89.0
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.5e-53 212.6 109 88.1
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.0e-53 212.2 109 87.2
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.0e-53 212.2 109 88.1
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 2.6e-53 211.8 109 89.0
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 3.4e-53 211.5 109 87.2
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.4e-53 211.5 109 89.0
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.4e-53 211.5 109 89.0
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.4e-53 211.5 109 89.0
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 88.1
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 89.0
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 87.2
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 87.2
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 87.2
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 4.4e-53 211.1 109 88.1
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.8e-53 210.7 107 86.9
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 5.8e-53 210.7 107 86.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 5.8e-53 210.7 107 86.9
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 5.8e-53 210.7 109 87.2
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 5.8e-53 210.7 109 87.2
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 5.8e-53 210.7 109 88.1
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.6e-53 210.3 109 87.2
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 7.6e-53 210.3 109 87.2
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 7.6e-53 210.3 109 89.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 7.6e-53 210.3 109 86.2
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-52 209.5 109 86.2
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 1.7e-52 209.1 108 85.2
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.7e-52 209.1 109 88.1
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 1.7e-52 209.1 109 88.1
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 2.2e-52 208.8 107 88.8
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.9e-52 208.4 109 87.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 3.8e-52 208.0 109 86.2
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 3.8e-52 208.0 108 88.0
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 3.8e-52 208.0 109 85.3
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 4.9e-52 207.6 109 87.2
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 4.9e-52 207.6 109 86.2
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 6.4e-52 207.2 107 86.9
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.1e-51 206.5 109 86.2
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.1e-51 206.5 109 86.2
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.4e-51 206.1 109 86.2
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 4.1e-51 204.5 109 85.3
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 4.1e-51 204.5 109 85.3
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 4.1e-51 204.5 108 87.0
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.1e-50 202.2 107 86.9
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 2.1e-50 202.2 107 85.0
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.1e-50 202.2 107 86.9
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.1e-50 202.2 107 86.9
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 6.0e-50 200.7 107 86.0
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 6.0e-50 200.7 107 86.0
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.0e-50 200.7 108 85.2
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 7.8e-50 200.3 109 84.4
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.0e-49 199.9 107 86.0
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.3e-49 199.5 107 86.0
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 1.3e-49 199.5 109 84.4
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 1.7e-49 199.1 107 85.0
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 1.7e-49 199.1 109 83.5
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 5.1e-49 197.6 107 85.0
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 6.6e-49 197.2 108 82.4
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.1e-48 196.4 107 84.1
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-48 196.1 107 84.1
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.5e-48 196.1 109 82.6
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.5e-48 195.3 109 82.6
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.2e-47 193.0 154 62.3
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.6e-47 192.6 140 67.1
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 1.1e-46 189.9 107 81.3
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 1.4e-46 189.5 95 88.4
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.4e-46 188.7 109 75.2
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 3.1e-46 188.3 109 76.1
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 1.7e-44 182.6 109 78.9
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.8e-42 173.7 100 82.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.4e-35 152.9 78 88.5
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 1.0e-33 146.7 78 84.6
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 6.7e-33 144.1 78 84.6
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 1.1e-32 143.3 107 66.4
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.5e-32 142.1 105 67.6
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 9.6e-32 140.2 77 80.5
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 1.1e-30 136.7 70 87.1
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 3.1e-30 135.2 68 88.2
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 5.3e-30 134.4 65 92.3
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 6.9e-30 134.0 64 93.8
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 6.9e-30 134.0 64 93.8
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.2e-29 133.3 65 90.8
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 1.5e-29 132.9 73 80.8
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 2.6e-29 132.1 65 90.8
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 3.4e-29 131.7 65 90.8
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 5.8e-29 131.0 65 87.7
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 7.6e-29 130.6 120 54.2
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.7e-28 129.4 65 87.7
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 4.9e-28 127.9 109 59.6
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 6.4e-28 127.5 65 86.2
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 2.4e-27 125.6 70 80.0
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 1.8e-25 119.4 107 56.1
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 1.8e-25 119.4 108 56.5
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 4.0e-22 108.2 88 63.6
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 9.0e-22 107.1 70 72.9
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 1.4e-19 99.8 57 80.7
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 3.3e-16 88.6 44 93.2
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.8e-14 82.8 41 87.8
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 6.9e-14 80.9 41 85.4


User provided reference genes

Program Settings