Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-71 273.1 140 100.0
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.3e-12 77.0 50 74.0
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 8.2e-12 74.3 50 72.0
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 3.1e-11 72.4 41 80.5
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 3.1e-11 72.4 41 78.0
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 4.1e-11 72.0 41 80.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.1e-11 72.0 41 80.5
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.3e-11 71.6 41 78.0
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 6.9e-11 71.2 50 68.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 6.9e-11 71.2 41 78.0
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.9e-11 71.2 50 70.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 6.9e-11 71.2 41 80.5
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 9.0e-11 70.9 41 80.5
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 9.0e-11 70.9 41 78.0
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 9.0e-11 70.9 55 67.3
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 9.0e-11 70.9 41 80.5
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.2e-10 70.5 41 75.6
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 1.2e-10 70.5 50 64.0
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 2.0e-10 69.7 41 75.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.0e-10 69.7 54 63.0
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.0e-10 69.7 54 63.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 2.6e-10 69.3 41 75.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 3.4e-10 68.9 41 78.0
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.4e-10 68.9 50 64.0
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.4e-10 68.9 41 80.5
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.5e-10 68.6 50 64.0
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 4.5e-10 68.6 41 75.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.9e-10 68.2 41 78.0
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.9e-10 68.2 50 66.0
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 5.9e-10 68.2 41 75.6
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 7.6e-10 67.8 41 70.7
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.0e-09 67.4 50 62.0
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.0e-09 67.4 42 73.8
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.0e-09 67.4 50 64.0
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.3e-09 67.0 41 75.6
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.3e-09 67.0 41 75.6
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.3e-09 67.0 41 70.7
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.3e-09 67.0 41 73.2
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.3e-09 67.0 54 59.3
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.3e-09 67.0 41 73.2
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 1.7e-09 66.6 42 73.8
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.7e-09 66.6 54 57.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.7e-09 66.6 54 57.4
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.7e-09 66.6 42 71.4
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 2.2e-09 66.2 41 75.6
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 2.9e-09 65.9 43 72.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.9e-09 65.9 43 72.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 2.9e-09 65.9 43 72.1
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 2.9e-09 65.9 43 72.1
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 2.9e-09 65.9 50 62.0
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 73.2
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 68.3
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 73.2
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 73.2
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 75.6
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 3.8e-09 65.5 50 62.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 3.8e-09 65.5 41 70.7
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 3.8e-09 65.5 50 62.0
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.8e-09 65.5 50 62.0
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.0e-09 65.1 54 53.7
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 5.0e-09 65.1 41 70.7
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 5.0e-09 65.1 41 70.7
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 5.0e-09 65.1 43 72.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 5.0e-09 65.1 41 75.6
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 6.5e-09 64.7 42 69.0
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 73.2
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 68.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 68.3
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 68.3
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 68.3
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 70.7
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 6.5e-09 64.7 41 73.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.5e-09 64.3 41 65.9
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 8.5e-09 64.3 41 73.2
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 8.5e-09 64.3 41 73.2
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.5e-09 64.3 50 60.0
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 8.5e-09 64.3 51 60.8
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.1e-08 63.9 41 70.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 1.1e-08 63.9 50 62.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.4e-08 63.5 41 73.2
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.4e-08 63.5 41 73.2
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-08 63.5 42 69.0
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-08 63.5 42 69.0
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.4e-08 63.5 42 69.0
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.4e-08 63.5 41 70.7
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 1.4e-08 63.5 41 68.3
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 1.4e-08 63.5 41 73.2
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.9e-08 63.2 41 70.7
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.9e-08 63.2 41 73.2
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 2.5e-08 62.8 41 68.3
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 2.5e-08 62.8 41 70.7
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.5e-08 62.8 41 75.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.5e-08 62.8 41 73.2
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 3.2e-08 62.4 41 68.3
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 3.2e-08 62.4 41 70.7
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.2e-08 62.4 41 70.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.2e-08 62.4 41 73.2
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.2e-08 62.0 41 68.3
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.2e-08 62.0 50 62.0
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 4.2e-08 62.0 41 70.7
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 7.2e-08 61.2 49 57.1
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 7.2e-08 61.2 41 68.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 7.2e-08 61.2 41 68.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 7.2e-08 61.2 41 68.3
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 9.3e-08 60.8 41 65.9
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 9.3e-08 60.8 54 53.7
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.2e-07 60.5 50 60.0
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 1.2e-07 60.5 41 65.9
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.2e-07 60.5 41 65.9
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.6e-07 60.1 41 63.4
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 2.1e-07 59.7 41 65.9
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.1e-07 59.7 41 68.3
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 2.7e-07 59.3 41 63.4
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.7e-07 59.3 50 56.0
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.7e-07 59.3 50 56.0
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 3.6e-07 58.9 41 65.9
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 3.6e-07 58.9 40 67.5
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.6e-07 58.9 50 60.0
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.6e-07 58.5 50 56.0
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 4.6e-07 58.5 41 65.9
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 4.6e-07 58.5 41 65.9
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.6e-07 58.5 41 65.9
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.6e-07 58.5 41 65.9
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 6.1e-07 58.2 49 57.1
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.9e-07 57.8 41 61.0
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.9e-07 57.8 39 66.7
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 7.9e-07 57.8 41 65.9
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 7.9e-07 57.8 40 67.5
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 7.9e-07 57.8 40 67.5
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 7.9e-07 57.8 42 59.5
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.0e-06 57.4 40 65.0
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.0e-06 57.4 54 44.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.3e-06 57.0 41 61.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.8e-06 56.6 49 55.1
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.1e-06 55.1 31 87.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 6.7e-06 54.7 41 58.5
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 8.7e-06 54.3 41 58.5


User provided reference genes

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