Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 2.5e-256 888.3 439 100.0
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 9.9e-189 663.7 439 75.2
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.3e-188 663.3 431 75.6
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.7e-188 662.9 435 74.5
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 2.4e-187 659.1 420 76.2
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 4.2e-187 658.3 435 74.3
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 9.2e-187 657.1 441 72.6
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.6e-186 656.4 439 72.4
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 7.8e-186 654.1 439 72.7
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.3e-185 653.3 435 74.0
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-185 652.9 423 74.9
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.7e-185 652.9 423 74.9
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.7e-185 652.9 439 72.2
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 3.0e-185 652.1 436 72.5
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 5.1e-185 651.4 431 74.5
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 5.1e-185 651.4 439 71.8
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 1.5e-184 649.8 443 72.7
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.5e-184 649.0 436 72.7
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 1.2e-183 646.7 436 72.2
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 1.6e-183 646.4 484 67.4
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.1e-183 646.0 434 73.7
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 3.6e-183 645.2 427 72.6
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 9.0e-182 640.6 426 73.2
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 2.0e-181 639.4 423 74.0
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 5.8e-181 637.9 438 71.9
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.6e-181 637.5 432 72.7
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 1.3e-180 636.7 440 70.9
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.3e-180 636.7 427 71.7
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 2.9e-180 635.6 423 73.5
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 3.8e-180 635.2 433 70.9
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.9e-180 634.8 453 70.4
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 4.9e-180 634.8 440 70.9
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 6.4e-180 634.4 427 71.0
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 2.4e-179 632.5 440 70.7
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 9.3e-179 630.6 436 71.1
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 3.5e-178 628.6 434 71.9
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 3.5e-178 628.6 438 70.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.6e-178 628.2 436 70.0
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 1.0e-177 627.1 423 71.4
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.3e-177 626.7 423 71.4
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 1.7e-177 626.3 423 71.6
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 6.6e-177 624.4 441 70.3
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 2.5e-176 622.5 423 71.6
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 3.3e-176 622.1 423 71.2
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 5.6e-176 621.3 440 69.3
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 2.1e-175 619.4 424 71.7
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 4.8e-175 618.2 426 70.9
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.8e-174 616.3 423 71.4
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 4.0e-174 615.1 423 70.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 9.0e-174 614.0 442 68.8
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.2e-173 613.6 423 70.9
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 1.5e-173 613.2 420 69.5
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 1.5e-173 613.2 423 70.2
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 1.5e-173 613.2 439 68.8
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 1.5e-173 613.2 439 69.2
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 9.9e-173 610.5 471 66.5
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.2e-172 609.4 488 63.3
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 4.9e-172 608.2 420 70.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 8.4e-172 607.4 434 68.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 1.1e-171 607.1 434 69.4
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.1e-171 607.1 434 68.2
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 1.4e-171 606.7 434 68.4
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 1.9e-171 606.3 420 70.2
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 1.9e-171 606.3 407 73.7
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 3.2e-171 605.5 434 68.7
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.2e-171 605.1 435 67.1
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 4.2e-171 605.1 440 68.6
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 9.3e-171 604.0 437 68.9
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.6e-170 603.2 434 68.2
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 2.7e-170 602.4 437 66.8
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.9e-170 600.9 438 69.4
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 1.3e-169 600.1 434 68.7
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.3e-169 600.1 462 65.4
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 3.0e-169 599.0 435 69.2
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 3.0e-169 599.0 449 67.0
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 3.0e-169 599.0 436 69.7
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 6.7e-169 597.8 441 65.8
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 8.7e-169 597.4 438 68.0
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 4.0e-166 588.6 436 66.5
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 1.1e-163 580.5 393 71.2
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 7.9e-162 574.3 393 73.5
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 7.9e-162 574.3 452 63.9
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 1.4e-158 563.5 390 68.2
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 3.1e-158 562.4 421 68.6
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 9.7e-152 540.8 413 65.4
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 3.7e-151 538.9 425 64.2
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.1e-150 535.8 439 62.6
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 1.2e-149 533.9 426 63.1
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.0e-148 530.8 377 66.8
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 1.7e-148 530.0 406 66.0
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.0e-141 506.5 441 57.6
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 1.6e-138 496.9 344 72.1
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 2.1e-138 496.5 366 65.3
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 6.1e-138 495.0 372 65.9
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.9e-137 492.3 342 71.9
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 6.7e-137 491.5 336 74.1
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.5e-136 490.3 404 62.4
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 5.9e-133 478.4 417 55.4
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 1.6e-130 470.3 420 58.1
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 2.0e-128 463.4 338 68.9
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 2.6e-128 463.0 336 69.3
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 2.2e-127 459.9 417 54.7
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 5.3e-126 455.3 458 54.8
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 1.5e-123 447.2 416 55.0
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 2.1e-122 443.4 345 66.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 4.4e-120 435.6 323 66.3
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 3.7e-119 432.6 409 54.3
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 5.9e-117 425.2 312 67.6
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 3.4e-112 409.5 432 52.8
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 2.1e-106 390.2 574 39.2
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 4.4e-104 382.5 333 60.7
C08p43090 Brassica napus HOM05D004598 ORTHO05D005550 2.9e-100 369.8 288 63.2
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.1e-97 359.8 378 53.7
Migut.H02297 Erythranthe guttata HOM05D004598 ORTHO05D005550 7.5e-96 355.1 271 64.2
TAR160G0002 Trochodendron aralioides HOM05D004598 ORTHO05D005550 3.5e-93 346.3 181 94.5
Manes.07G140750 Manihot esculenta HOM05D004598 ORTHO05D005550 6.6e-92 342.0 282 63.8
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 1.1e-91 341.3 425 48.5
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.1e-91 341.3 270 62.2
CSS0036727 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.1e-90 337.0 241 67.6
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.8e-89 334.0 439 43.7
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 2.1e-85 320.5 205 71.7
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 1.2e-82 311.2 423 43.0
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 1.6e-82 310.8 425 43.8
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 2.8e-82 310.1 354 50.8
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 2.2e-79 300.4 400 44.2
Thhalv10015361m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 6.0e-77 292.4 235 63.0
Zm00001eb096280 Zea mays HOM05D004598 ORTHO05D005550 3.3e-75 286.6 217 65.9
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 7.6e-72 275.4 150 86.0
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 1.6e-69 267.7 237 59.9
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 1.0e-68 265.0 365 43.8
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.3e-68 264.6 152 82.2
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 1.3e-63 248.1 474 35.2
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 1.4e-62 244.6 150 76.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 7.9e-61 238.8 154 73.4
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 7.9e-61 238.8 415 37.3
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 2.8e-58 230.3 143 75.5
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.3e-55 221.5 422 35.5
MD10G1130700 Malus domestica HOM05D004598 ORTHO05D005550 3.5e-53 213.4 136 71.3
vmacro01928 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.9e-53 212.2 145 71.0
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 4.3e-51 206.5 257 48.2
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 2.8e-50 203.8 118 84.7
Lj2E933T1 Lonicera japonica HOM05D004598 ORTHO05D005550 7.4e-43 179.1 111 73.9
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.3e-34 149.4 92 78.3
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 6.3e-34 149.4 92 78.3
BcaB01g04740 Brassica carinata HOM05D004598 ORTHO05D005550 6.5e-31 139.4 128 60.9
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 1.5e-27 128.3 79 72.2
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.5e-27 128.3 426 26.8
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 3.8e-23 113.6 62 87.1
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 3.6e-21 107.1 346 26.3
CAN.G890.17 Capsicum annuum HOM05D004598 ORTHO05D005550 9.4e-14 82.4 58 70.7
SHI44717 Sapria himalayana HOM05D004598 ORTHO05D005550 1.8e-12 78.2 80 55.0
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 1.3e-10 72.0 50 72.0
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-10 69.7 53 64.2
SHI53813 Sapria himalayana HOM05D004598 ORTHO05D005550 6.3e-10 69.7 54 57.4
SHI39037 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-10 69.3 54 57.4
SHI53927 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-10 69.3 54 57.4
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 9.1e-09 65.9 48 60.4
SHI41529 Sapria himalayana HOM05D004598 ORTHO05D005550 8.5e-07 59.3 54 53.7


User provided reference genes

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