Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0441 Trochodendron aralioides HOM05D002206 ORTHO05D002219 9.5e-270 932.9 479 100.0
TAR626G1279 Trochodendron aralioides HOM05D002206 ORTHO05D002219 1.6e-176 623.2 522 66.9
Dinv04034 Davidia involucrata HOM05D002206 ORTHO05D002219 5.4e-148 528.5 463 63.7
Actinidia39083 Actinidia chinensis HOM05D002206 ORTHO05D002219 4.6e-147 525.4 481 61.5
GSVIVG01016777001 Vitis vinifera HOM05D002206 ORTHO05D002219 2.7e-139 499.6 543 54.9
QL05p008151 Quercus lobata HOM05D002206 ORTHO05D002219 4.8e-136 488.8 451 61.2
Cfa003540 Carpinus fangiana HOM05D002206 ORTHO05D002219 8.4e-133 478.0 451 61.2
CiPaw.01G219900 Carya illinoinensis HOM05D002206 ORTHO05D002219 3.6e-128 462.6 449 58.1
Nn8g38715 Nelumbo nucifera HOM05D002206 ORTHO05D002219 1.2e-126 457.6 481 58.0
Rhsim12G0209300 Rhododendron simsii HOM05D002206 ORTHO05D002219 3.8e-125 452.6 481 55.5
MBI13_g11364_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 6.0e-123 445.3 475 56.8
Lj5A38T41 Lonicera japonica HOM05D002206 ORTHO05D002219 3.0e-122 443.0 484 55.6
Potri.003G063700 Populus trichocarpa HOM05D002206 ORTHO05D002219 1.5e-118 430.6 434 57.6
MD09G1184800 Malus domestica HOM05D002206 ORTHO05D002219 5.5e-116 422.2 470 55.3
Duzib192G0904 Durio zibethinus HOM05D002206 ORTHO05D002219 9.3e-116 421.4 450 55.3
RcHm_v2.0_Chr2g0145091 Rosa chinensis HOM05D002206 ORTHO05D002219 9.3e-116 421.4 450 56.7
MD17G1168700 Malus domestica HOM05D002206 ORTHO05D002219 1.2e-115 421.0 470 55.3
Gohir.D10G054800 Gossypium hirsutum HOM05D002206 ORTHO05D002219 2.7e-115 419.9 460 52.8
Gorai.011G058300 Gossypium raimondii HOM05D002206 ORTHO05D002219 7.9e-115 418.3 460 52.6
COL.COLO4_30770 Corchorus olitorius HOM05D002206 ORTHO05D002219 3.9e-114 416.0 459 54.0
Potri.001G170200 Populus trichocarpa HOM05D002206 ORTHO05D002219 5.1e-114 415.6 450 55.1
Aqoxy7G01087 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 1.5e-113 414.1 506 49.4
Gohir.A10G053000 Gossypium hirsutum HOM05D002206 ORTHO05D002219 1.9e-113 413.7 460 52.6
Thecc.06G118700 Theobroma cacao HOM05D002206 ORTHO05D002219 4.3e-113 412.5 506 51.6
Prupe.3G042900 Prunus persica HOM05D002206 ORTHO05D002219 1.3e-112 411.0 504 50.8
FvH4_6g34560 Fragaria vesca HOM05D002206 ORTHO05D002219 5.3e-111 405.6 449 54.6
CiPaw.02G136600 Carya illinoinensis HOM05D002206 ORTHO05D002219 9.0e-111 404.8 391 58.8
FAN14G4975 Fragaria x ananassa HOM05D002206 ORTHO05D002219 9.0e-111 404.8 449 54.6
FAN09G1436 Fragaria x ananassa HOM05D002206 ORTHO05D002219 2.0e-110 403.7 449 54.3
FAN02G0106 Fragaria x ananassa HOM05D002206 ORTHO05D002219 3.8e-109 399.4 449 54.6
FAN05G1508 Fragaria x ananassa HOM05D002206 ORTHO05D002219 4.2e-108 396.0 449 53.5
Manes.11G021500 Manihot esculenta HOM05D002206 ORTHO05D002219 4.2e-108 396.0 488 51.4
Ciclev10025094m.g Citrus clementina HOM05D002206 ORTHO05D002219 2.3e-106 390.2 504 48.8
Haze_16020 Corylus avellana HOM05D002206 ORTHO05D002219 3.3e-105 386.3 546 46.3
TWI75G1747 Tripterygium wilfordii HOM05D002206 ORTHO05D002219 1.3e-104 384.4 428 53.7
Atru.chr1.3913_Atru.chr1.3914 Acer truncatum HOM05D002206 ORTHO05D002219 2.0e-102 377.1 468 48.9
CANSAT56G1008 Cannabis sativa HOM05D002206 ORTHO05D002219 1.0e-101 374.8 397 57.2
DCAR_007643 Daucus carota HOM05D002206 ORTHO05D002219 2.2e-101 373.6 456 49.3
Psat4g183000 Pisum sativum HOM05D002206 ORTHO05D002219 6.1e-99 365.5 513 45.0
Sabra03G0037200 Salix brachista HOM05D002206 ORTHO05D002219 1.0e-98 364.8 445 49.9
vmacro17055 Vaccinium macrocarpon HOM05D002206 ORTHO05D002219 2.0e-97 360.5 480 48.1
Duzib160G0193 Durio zibethinus HOM05D002206 ORTHO05D002219 4.8e-96 355.9 407 52.6
ATR0598G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 6.3e-96 355.5 497 47.3
CSS0024498 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 7.7e-94 348.6 319 61.1
Hma1.2p1_0496F.1_g166190 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 4.2e-92 342.8 412 54.9
Ca_05006_v3 Cicer arietinum L. HOM05D002206 ORTHO05D002219 5.5e-92 342.4 517 44.1
PSO421G0732 Papaver somniferum HOM05D002206 ORTHO05D002219 9.4e-92 341.7 662 37.9
Sabra01G0141100 Salix brachista HOM05D002206 ORTHO05D002219 2.1e-91 340.5 464 46.6
TPR.G32506 Trifolium pratense HOM05D002206 ORTHO05D002219 2.0e-89 334.0 507 43.8
Oeu007565.1 Olea europaea HOM05D002206 ORTHO05D002219 2.6e-89 333.6 408 49.5
Lj3g0019571 Lotus japonicus HOM05D002206 ORTHO05D002219 3.3e-89 333.2 469 44.8
Medtr8g020330 Medicago truncatula HOM05D002206 ORTHO05D002219 4.4e-89 332.8 506 42.9
Phvul.010G131400 Phaseolus vulgaris HOM05D002206 ORTHO05D002219 7.4e-89 332.0 519 42.6
Glyma.07G037100 Glycine max HOM05D002206 ORTHO05D002219 1.1e-87 328.2 497 43.9
Manes.04G143700 Manihot esculenta HOM05D002206 ORTHO05D002219 1.4e-87 327.8 428 49.1
VMungo0331G1548 Vigna mungo HOM05D002206 ORTHO05D002219 7.0e-87 325.5 519 40.8
PGSC0003DMG400002481 Solanum tuberosum HOM05D002206 ORTHO05D002219 5.9e-86 322.4 425 46.4
Glyma.16G006500 Glycine max HOM05D002206 ORTHO05D002219 7.7e-86 322.0 501 42.7
Sopen03g040810 Solanum pennellii HOM05D002206 ORTHO05D002219 5.0e-85 319.3 425 45.6
Oeu058722.2 Olea europaea HOM05D002206 ORTHO05D002219 1.9e-84 317.4 401 48.4
Migut.D00942 Erythranthe guttata HOM05D002206 ORTHO05D002219 4.2e-84 316.2 438 46.1
Sc10g0007860 Simmondsia chinensis HOM05D002206 ORTHO05D002219 1.2e-83 314.7 467 45.8
PSO063G5513 Papaver somniferum HOM05D002206 ORTHO05D002219 2.1e-83 313.9 644 37.7
MSTRG.4788 Avicennia marina HOM05D002206 ORTHO05D002219 4.7e-83 312.8 477 44.0
Lalb_Chr04g0263411 Lupinus albus HOM05D002206 ORTHO05D002219 1.1e-81 308.1 510 42.0
Hma1.2p1_0291F.1_g115170 Hydrangea macrophylla HOM05D002206 ORTHO05D002219 2.0e-81 307.4 274 61.7
Eucgr.J02823 Eucalyptus grandis HOM05D002206 ORTHO05D002219 2.6e-81 307.0 428 47.2
PGR102G2864 Punica granatum HOM05D002206 ORTHO05D002219 1.7e-80 304.3 443 47.0
CsaV3_7G034530 Cucumis sativus L. HOM05D001583 ORTHO05D001900 6.3e-80 302.4 455 46.6
Solyc03g121990.4 Solanum lycopersicum HOM05D002206 ORTHO05D002219 6.3e-80 302.4 425 44.5
CAN.G862.28 Capsicum annuum HOM05D002206 ORTHO05D002219 3.1e-79 300.1 420 45.2
HanXRQChr10g0312061 Helianthus annuus HOM05D002206 ORTHO05D002219 4.5e-78 296.2 482 44.0
Nitab4.5_0002072g0040 Nicotiana tabacum HOM05D002206 ORTHO05D002219 5.9e-78 295.8 434 43.5
Nitab4.5_0012253g0010 Nicotiana tabacum HOM05D002206 ORTHO05D002219 6.5e-77 292.4 457 42.7
AUR62001491 Chenopodium quinoa HOM05D002206 ORTHO05D002219 2.1e-75 287.3 456 42.3
AUR62009879 Chenopodium quinoa HOM05D002206 ORTHO05D002219 1.0e-74 285.0 457 42.9
Lsat_1_v5_gn_5_135921 Lactuca sativa HOM05D002206 ORTHO05D002219 5.2e-74 282.7 450 45.6
Sed0013927 Sechium edule HOM05D002206 ORTHO05D002219 8.8e-74 282.0 459 44.4
EL10Ac7g16404 Beta vulgaris HOM05D002206 ORTHO05D002219 3.4e-73 280.0 458 43.2
Duzib235G0320 Durio zibethinus HOM05D002206 ORTHO05D002219 2.2e-72 277.3 297 53.2
Hund05742 Selenicereus undatus HOM05D002206 ORTHO05D002219 2.8e-72 276.9 442 45.2
Cpa.g.sc25.107 Carica papaya HOM05D002206 ORTHO05D002219 5.4e-71 272.7 277 54.9
ECA234G1457 Erigeron canadensis HOM05D002206 ORTHO05D002219 4.5e-70 269.6 444 41.2
Ah.08g216740 Amaranthus hybridus HOM05D002206 ORTHO05D002219 6.1e-67 259.2 428 43.0
Peaxi162Scf00038g01824 Petunia axillaris HOM05D002206 ORTHO05D002219 2.0e-65 254.2 399 43.1
SalBow7G3112 Salvia bowleyana HOM05D002206 ORTHO05D002219 2.0e-65 254.2 461 39.9
Aa31LG7G2240 Aethionema arabicum HOM05D002206 ORTHO05D002219 1.4e-63 248.1 405 43.2
THA.LOC104808052 Tarenaya hassleriana HOM05D002206 ORTHO05D002219 7.0e-63 245.7 432 40.5
Cc00_g25540 Coffea canephora HOM05D002206 ORTHO05D002219 1.2e-62 245.0 478 37.4
arahy.Tifrunner.gnm1.ann1.HCBU45 Arachis hypogaea HOM05D002206 ORTHO05D002219 1.9e-60 237.7 339 45.4
Os02g0776700 Oryza sativa ssp. japonica HOM05D002206 ORTHO05D002219 2.8e-59 233.8 420 37.9
CDE06G2062 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 2.0e-57 227.6 449 41.0
CARHR065570 Cardamine hirsuta HOM05D002206 ORTHO05D002219 2.0e-54 217.6 501 34.9
Sp1g15600 Schrenkiella parvula HOM05D002206 ORTHO05D002219 4.6e-54 216.5 450 37.8
Thhalv10018282m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 1.0e-53 215.3 451 38.1
Sp5g27710 Schrenkiella parvula HOM05D002206 ORTHO05D002219 1.3e-53 214.9 453 38.0
AL1G29750 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 1.7e-53 214.5 479 37.4
Zm00001eb256690 Zea mays HOM05D002206 ORTHO05D002219 2.3e-53 214.2 410 36.3
AT1G17460 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 1.2e-51 208.4 473 37.4
Aqoxy7G01083 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 2.8e-51 207.2 237 49.8
C05p15870 Brassica napus HOM05D002206 ORTHO05D002219 2.3e-50 204.1 456 36.0
Aa31LG4G3020 Aethionema arabicum HOM05D002206 ORTHO05D002219 5.2e-50 203.0 463 35.4
Carub.0001s1723 Capsella rubella HOM05D002206 ORTHO05D002219 5.2e-50 203.0 483 34.4
AL2G32330 Arabidopsis lyrata HOM05D002206 ORTHO05D002219 2.0e-49 201.1 549 33.3
BcaC08g45698 Brassica carinata HOM05D002206 ORTHO05D002219 1.3e-48 198.4 443 37.0
CARHR018060 Cardamine hirsuta HOM05D002206 ORTHO05D002219 4.9e-48 196.4 481 33.9
CDE07G0096 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 4.9e-48 196.4 437 38.9
A07p30130 Brassica napus HOM05D002206 ORTHO05D002219 6.4e-48 196.1 498 35.1
AT1G72650 Arabidopsis thaliana HOM05D002206 ORTHO05D002219 8.3e-48 195.7 534 33.7
BcaC08g46708 Brassica carinata HOM05D002206 ORTHO05D002219 8.3e-48 195.7 431 37.6
BraA07t30651Z Brassica rapa HOM05D002206 ORTHO05D002219 1.1e-47 195.3 500 35.0
BolC6t39738H Brassica oleracea HOM05D002118 ORTHO05D002219 1.9e-47 194.5 442 36.9
SGA_v2.0_scaffold68G22883 Striga asiatica HOM05D002206 ORTHO05D002219 1.9e-47 194.5 351 39.9
BolC6t38584H Brassica oleracea HOM05D002206 ORTHO05D002219 7.0e-47 192.6 453 36.0
A07p38810 Brassica napus HOM05D002206 ORTHO05D002219 9.2e-47 192.2 428 38.1
BolC5t30291H Brassica oleracea HOM05D002206 ORTHO05D002219 1.6e-46 191.4 478 34.3
A06p13390 Brassica napus HOM05D002206 ORTHO05D002219 3.5e-46 190.3 443 36.1
C06p46970 Brassica napus HOM05D002206 ORTHO05D002219 4.6e-46 189.9 407 38.6
BcaB03g15681 Brassica carinata HOM05D002206 ORTHO05D002219 6.0e-46 189.5 457 35.7
BraA07t31435Z Brassica rapa HOM05D002206 ORTHO05D002219 1.5e-44 184.9 438 36.8
BraA06t24491Z Brassica rapa HOM05D002206 ORTHO05D002219 7.3e-44 182.6 495 33.7
Carub.0002s1950 Capsella rubella HOM05D002206 ORTHO05D002219 3.6e-43 180.3 597 31.3
C06p34820 Brassica napus HOM05D002206 ORTHO05D002219 1.4e-42 178.3 408 38.0
SEGI_32999 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 5.8e-41 172.9 304 41.1
SEGI_01955 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 1.3e-40 171.8 347 37.5
Thhalv10007199m.g Eutrema salsugineum HOM05D002206 ORTHO05D002219 2.1e-35 154.5 330 37.6
SEGI_30968 Sequoiadendron giganteum HOM05D002206 ORTHO05D002219 4.0e-34 150.2 280 38.2
ATR0680G183 Amborella trichopoda HOM05D002206 ORTHO05D002219 1.0e-29 135.6 435 31.5
Actinidia37363 Actinidia chinensis HOM05D002206 ORTHO05D002219 3.0e-29 134.0 150 53.3
AUR62019496 Chenopodium quinoa HOM05D002206 ORTHO05D002219 3.0e-29 134.0 223 43.0
TAR623G1051 Trochodendron aralioides HOM05D002206 ORTHO05D002219 1.1e-28 132.1 443 32.1
MELO3C024360.2 Cucumis melo HOM05D002206 ORTHO05D002219 1.5e-28 131.7 185 48.1
Nn2g13745 Nelumbo nucifera HOM05D002206 ORTHO05D002219 2.9e-24 117.5 431 30.9
Nn2g11536 Nelumbo nucifera HOM05D002206 ORTHO05D002219 4.2e-23 113.6 404 31.9
MBI18_g39090_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 2.7e-22 110.9 263 35.7
Aqoxy1G01186 Aquilegia oxysepala HOM05D002206 ORTHO05D002219 1.1e-20 105.5 403 28.5
Duzib235G0587 Durio zibethinus HOM05D002206 ORTHO05D002219 9.6e-20 102.4 89 64.0
CSS0046262 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 1.6e-19 101.7 106 57.5
Cpa.g.sc25.108 Carica papaya HOM05D002206 ORTHO05D002219 1.8e-18 98.2 101 58.4
MBI19_g11854_MAGBIO Magnolia biondii HOM05D002206 ORTHO05D002219 1.5e-17 95.1 100 59.0
AagrBONN_evm.TU.Sc2ySwM_228.303 Anthoceros agrestis HOM05D002206 ORTHO05D002219 5.6e-12 76.6 250 32.4
PGR119G2274 Punica granatum HOM05D002206 ORTHO05D002219 1.2e-09 68.9 220 27.7
QL01p021039 Quercus lobata HOM05D002206 ORTHO05D002219 3.4e-09 67.4 222 30.2
Mapoly0008s0016 Marchantia polymorpha HOM05D002206 ORTHO05D002219 4.5e-09 67.0 295 29.8
Psat7g153640 Pisum sativum HOM05D002206 ORTHO05D002219 5.8e-09 66.6 69 50.7
Eucgr.J00905 Eucalyptus grandis HOM05D002206 ORTHO05D002219 1.3e-08 65.5 247 27.1
CDE05G0207 Ceratophyllum demersum HOM05D002206 ORTHO05D002219 4.9e-08 63.5 281 27.0
Pp3c2_20860 Physcomitrium patens HOM05D002206 ORTHO05D002219 4.2e-07 60.5 137 36.5
CSS0044849 Camellia sinensis var. sinensis HOM05D002206 ORTHO05D002219 2.7e-06 57.8 48 56.2
GSVIVG01025226001 Vitis vinifera HOM05D002206 ORTHO05D002219 6.0e-06 56.6 390 25.1


User provided reference genes

Program Settings