Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 6.4e-260 900.2 450 100.0
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 8.5e-212 740.3 447 83.2
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.2e-199 699.1 448 78.3
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 1.8e-193 679.5 448 76.8
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.0e-193 678.7 434 79.0
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 8.9e-193 677.2 433 79.2
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.0e-188 663.7 450 74.4
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 3.3e-187 658.7 451 75.2
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 2.1e-186 656.0 443 75.2
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.8e-185 652.9 441 75.3
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.8e-185 652.9 441 75.3
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.9e-185 650.6 448 73.7
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.5e-184 649.8 436 75.5
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.5e-184 649.8 437 75.7
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.6e-184 649.0 441 75.1
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.4e-184 648.7 435 75.9
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 3.4e-184 648.7 458 73.4
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 6.4e-183 644.4 452 73.0
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 1.4e-182 643.3 436 75.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 1.4e-182 643.3 451 73.6
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 5.4e-182 641.3 426 75.8
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 4.6e-181 638.3 433 73.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.1e-179 633.6 448 72.5
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 7.3e-179 630.9 425 75.5
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 1.2e-178 630.2 441 74.6
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 1.6e-178 629.8 450 72.7
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 2.1e-178 629.4 451 70.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 4.7e-178 628.2 442 72.9
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 4.7e-178 628.2 433 73.7
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 3.4e-176 622.1 433 73.0
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 4.4e-176 621.7 451 70.5
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.7e-175 619.8 453 70.2
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.4e-174 614.8 453 70.0
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 9.2e-174 614.0 435 72.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 1.0e-172 610.5 445 71.2
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.7e-172 609.8 452 72.1
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.3e-172 609.4 453 69.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.0e-172 609.0 469 68.7
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.9e-172 608.6 452 71.9
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.0e-172 608.2 453 69.8
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 6.6e-172 607.8 449 70.2
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 6.6e-172 607.8 513 62.4
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 2.5e-171 605.9 453 69.5
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 5.6e-171 604.7 456 69.1
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 5.6e-171 604.7 471 69.4
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 9.5e-171 604.0 445 69.2
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 4.7e-170 601.7 437 71.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 4.7e-170 601.7 432 71.1
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 8.1e-170 600.9 442 69.0
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 1.1e-169 600.5 438 71.2
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 1.4e-169 600.1 450 69.6
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.3e-169 599.4 438 70.8
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 4.0e-169 598.6 429 70.6
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 4.0e-169 598.6 432 70.8
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 5.2e-169 598.2 432 71.1
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 5.2e-169 598.2 450 69.3
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.8e-169 597.8 472 68.9
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.4e-168 595.5 439 71.3
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 5.8e-168 594.7 450 68.2
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 5.8e-168 594.7 437 70.9
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 6.4e-167 591.3 450 68.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 6.4e-167 591.3 450 68.4
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 1.9e-166 589.7 451 67.4
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 7.1e-166 587.8 455 67.5
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 9.2e-166 587.4 433 69.1
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.6e-165 586.6 451 68.1
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 6.0e-165 584.7 447 67.1
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 1.0e-164 583.9 450 68.9
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 5.1e-164 581.6 436 69.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.1e-164 581.6 437 68.9
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 8.6e-164 580.9 436 69.0
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 8.6e-164 580.9 434 69.6
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 8.6e-164 580.9 448 68.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 1.5e-163 580.1 451 66.7
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.9e-163 579.7 436 68.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 1.9e-163 579.7 436 69.0
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.5e-163 579.3 438 69.2
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 2.5e-163 579.3 436 68.8
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 3.3e-163 578.9 433 67.9
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.3e-163 578.9 436 69.0
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 9.5e-163 577.4 437 68.4
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 9.5e-163 577.4 451 69.8
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 1.6e-162 576.6 437 68.6
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 2.8e-162 575.9 437 70.5
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.7e-162 575.1 437 68.9
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 8.1e-162 574.3 482 64.1
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-161 573.9 442 67.9
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 1.1e-161 573.9 442 67.9
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.4e-161 573.5 442 67.6
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 3.1e-161 572.4 435 69.0
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 6.8e-161 571.2 444 68.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 1.2e-160 570.5 451 66.7
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.6e-160 569.3 447 66.2
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 5.8e-160 568.2 434 66.8
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.6e-160 567.8 434 68.7
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 9.9e-160 567.4 434 68.7
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 1.7e-159 566.6 436 69.5
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.2e-159 566.2 434 68.4
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 6.4e-159 564.7 438 67.8
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 1.1e-158 563.9 453 66.7
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 3.2e-158 562.4 446 65.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 4.2e-158 562.0 436 66.7
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 5.4e-158 561.6 451 66.3
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 7.1e-158 561.2 446 66.1
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.2e-158 560.8 429 68.5
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 4.6e-157 558.5 434 68.2
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.0e-157 558.1 434 68.2
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 1.3e-156 557.0 435 69.4
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-155 553.9 506 58.7
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.6e-155 551.6 439 66.7
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-154 549.3 440 66.6
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 1.1e-153 547.4 438 66.7
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 2.4e-153 546.2 433 68.4
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 5.3e-153 545.0 419 68.5
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 6.9e-153 544.7 442 66.3
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.0e-153 544.3 425 64.9
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.2e-152 543.9 437 66.8
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 9.9e-152 540.8 442 65.8
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.1e-150 537.3 432 66.4
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.1e-150 537.3 438 67.8
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 4.6e-149 531.9 435 65.1
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 6.2e-146 521.5 436 63.3
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.1e-145 520.8 453 61.6
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 4.0e-145 518.8 439 63.3
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 8.7e-140 501.1 403 65.5
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.7e-135 486.9 428 58.6
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 7.9e-133 478.0 456 59.9
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 7.6e-128 461.5 402 62.2
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.1e-126 457.6 383 62.9
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.3e-124 450.7 460 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 4.3e-123 445.7 450 54.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 5.7e-123 445.3 287 78.4
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 4.8e-122 442.2 495 53.9
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.4e-112 409.5 303 69.3
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 4.5e-112 409.1 465 50.5
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 1.8e-108 397.1 330 63.6
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.0e-107 393.7 447 50.3
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.7e-100 368.6 277 69.0
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 9.7e-99 364.8 322 64.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 4.8e-90 335.9 318 59.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 2.4e-81 307.0 464 42.7
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 2.0e-80 303.9 189 80.4
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 5.9e-80 302.4 193 79.3
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 1.6e-77 294.3 300 55.0
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 8.3e-74 282.0 216 66.2
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 8.6e-71 271.9 192 71.9
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 9.5e-70 268.5 192 69.8
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.3e-68 263.8 268 55.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 9.8e-67 258.5 520 36.9
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.7e-63 247.7 235 59.1
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 3.9e-63 246.5 185 65.9
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 9.8e-59 231.9 290 46.9
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 2.2e-58 230.7 210 58.6
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 1.1e-57 228.4 157 74.5
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.7e-55 221.1 241 53.1
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.4e-52 211.5 128 79.7
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 2.4e-49 200.7 170 58.2
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 4.6e-48 196.4 120 81.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.3e-47 194.1 137 70.1
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.8e-44 184.5 319 38.6
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 3.5e-40 170.2 301 37.9
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 6.2e-37 159.5 299 36.8
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 3.2e-33 147.1 154 52.6
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 8.7e-31 139.0 169 44.4
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 3.6e-29 133.7 79 78.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 2.0e-27 127.9 76 78.9
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 4.2e-25 120.2 79 81.0
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 7.1e-25 119.4 125 56.8
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 7.1e-25 119.4 153 51.0
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 4.0e-20 103.6 122 53.3
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 6.9e-20 102.8 126 50.0
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 2.9e-18 97.4 74 70.3
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 1.9e-14 84.7 94 51.1
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 7.4e-14 82.8 104 50.0
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 2.0e-11 74.7 62 67.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 3.8e-10 70.5 51 68.6
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 1.1e-09 68.9 46 71.7
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 2.1e-08 64.7 63 55.6
ClCG03G018030 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.7e-08 64.3 48 72.9
TWI63G1527 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 3.9e-07 60.5 151 31.8
SEGI_37721 Sequoiadendron giganteum HOM05D011601 ORTHO05D021003 5.1e-07 60.1 170 31.8
TWI38G0197 Tripterygium wilfordii HOM05D002054 ORTHO05D005362 5.1e-07 60.1 151 31.8
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 8.7e-07 59.3 76 48.7
CDE04G2426 Ceratophyllum demersum HOM05D002054 ORTHO05D004936 7.4e-06 56.2 158 27.2
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 9.7e-06 55.8 36 66.7


User provided reference genes

Program Settings