Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.1e-156 553.5 278 100.0
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 6.1e-144 514.2 278 92.4
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 8.3e-133 477.2 278 88.1
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 2.0e-131 472.6 266 89.5
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.0e-130 470.3 278 85.3
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 5.6e-129 464.5 280 83.9
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.1e-127 458.8 278 83.8
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.2e-125 452.6 280 81.8
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 8.3e-125 450.7 280 81.4
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.1e-124 448.4 278 80.6
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 8.1e-120 434.1 257 85.2
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.4e-119 433.3 273 81.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-116 423.3 278 78.4
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 3.2e-116 422.2 279 78.9
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 3.5e-115 418.7 279 75.6
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 4.6e-115 418.3 279 76.3
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 3.9e-114 415.2 279 76.3
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.9e-113 412.9 279 76.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 5.6e-113 411.4 284 73.6
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.8e-112 409.1 273 76.6
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.7e-112 408.3 273 75.8
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-111 407.1 276 74.6
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.1e-111 407.1 273 74.4
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 2.4e-111 406.0 272 75.4
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 4.0e-111 405.2 279 75.3
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 4.4e-110 401.7 273 74.4
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 2.2e-109 399.4 274 75.2
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 8.4e-109 397.5 279 72.8
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 1.1e-108 397.1 279 73.8
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.9e-108 396.4 279 72.4
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.9e-108 396.4 279 72.4
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 4.2e-108 395.2 279 71.7
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 5.4e-108 394.8 273 73.6
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 5.4e-108 394.8 273 73.6
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 9.2e-108 394.0 278 72.3
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 2.1e-107 392.9 273 72.9
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 3.5e-107 392.1 275 73.8
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 4.6e-107 391.7 278 71.6
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 7.8e-107 391.0 273 72.5
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 7.8e-107 391.0 279 72.8
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.8e-107 391.0 273 73.3
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.0e-106 390.6 275 71.6
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 2.3e-106 389.4 277 72.6
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 3.0e-106 389.0 273 72.5
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 3.9e-106 388.7 279 70.3
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 6.6e-106 387.9 279 69.9
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 1.1e-105 387.1 284 70.4
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 1.1e-105 387.1 282 70.9
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.5e-105 386.7 273 72.2
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-105 386.0 273 71.1
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.5e-105 386.0 273 71.4
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.3e-105 385.2 273 71.8
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.6e-105 384.8 278 72.3
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 7.3e-105 384.4 276 71.4
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.2e-104 383.6 273 71.8
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 1.2e-104 383.6 273 71.8
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.2e-104 383.6 276 71.0
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 1.6e-104 383.3 274 71.2
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.6e-104 383.3 276 71.0
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 2.1e-104 382.9 272 74.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.1e-104 382.9 273 70.3
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 2.8e-104 382.5 274 70.8
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 2.8e-104 382.5 274 70.8
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.8e-104 382.5 276 71.0
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 2.8e-104 382.5 276 71.0
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 3.6e-104 382.1 277 72.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 3.6e-104 382.1 274 73.4
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.6e-104 382.1 273 71.8
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.7e-104 381.7 276 71.0
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 4.7e-104 381.7 276 71.0
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 4.7e-104 381.7 274 70.4
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 4.7e-104 381.7 274 71.5
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 8.1e-104 380.9 273 71.1
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 8.1e-104 380.9 276 71.4
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 8.1e-104 380.9 273 71.1
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 1.4e-103 380.2 274 70.8
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.4e-103 380.2 273 71.4
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 2.4e-103 379.4 286 69.6
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 3.1e-103 379.0 274 69.7
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 3.1e-103 379.0 273 70.7
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 4.0e-103 378.6 286 68.9
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.0e-103 378.6 273 72.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 4.0e-103 378.6 278 70.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 6.9e-103 377.9 274 70.1
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 6.9e-103 377.9 276 71.4
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 1.2e-102 377.1 274 70.4
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 1.5e-102 376.7 273 70.7
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 1.5e-102 376.7 273 70.7
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.6e-102 375.9 273 71.1
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 3.4e-102 375.6 273 70.3
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.4e-102 375.6 273 70.0
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.4e-102 375.2 273 69.2
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 5.8e-102 374.8 273 70.0
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 7.6e-102 374.4 268 70.9
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 9.9e-102 374.0 273 69.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-101 373.6 273 69.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 1.3e-101 373.6 268 70.9
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 2.2e-101 372.9 275 69.1
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.2e-101 372.9 273 69.2
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 2.2e-101 372.9 273 69.2
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.2e-101 372.9 273 69.2
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 2.9e-101 372.5 268 70.5
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.8e-101 372.1 273 70.3
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 4.9e-101 371.7 273 68.9
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 4.9e-101 371.7 273 68.9
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.1e-100 370.5 268 70.5
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-100 370.5 268 70.5
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.1e-100 370.5 268 70.5
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 1.1e-100 370.5 273 70.3
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.9e-100 369.8 273 68.5
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 2.4e-100 369.4 274 69.0
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 7.1e-100 367.9 273 70.0
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 9.3e-100 367.5 273 70.0
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 9.3e-100 367.5 273 70.0
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 9.3e-100 367.5 273 68.9
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 9.3e-100 367.5 283 67.8
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.2e-99 367.1 285 66.7
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.7e-99 365.9 273 69.6
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 6.0e-99 364.8 285 65.6
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.3e-98 363.6 275 69.1
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.7e-98 363.2 277 68.6
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.3e-98 362.8 274 70.4
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.0e-98 362.5 273 69.2
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 3.9e-98 362.1 267 69.7
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-97 360.1 267 69.3
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.3e-97 359.0 273 68.1
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.3e-97 358.6 267 68.5
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.1e-95 354.0 280 67.9
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 3.1e-95 352.4 278 68.0
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 3.1e-95 352.4 284 62.3
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 6.9e-95 351.3 273 64.5
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-92 343.2 263 65.0
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 3.2e-92 342.4 291 63.9
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 1.3e-90 337.0 279 63.1
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 5.1e-90 335.1 279 63.1
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.9e-89 333.2 279 63.4
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 2.5e-89 332.8 277 63.2
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.4e-89 331.3 278 65.5
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.6e-88 330.1 290 62.4
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.7e-88 328.9 290 62.1
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.8e-87 326.6 294 59.9
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-86 323.6 279 60.9
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 9.9e-86 320.9 228 71.9
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 1.3e-80 303.9 276 60.9
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.0e-74 284.3 177 81.9
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 8.7e-74 281.2 268 56.3
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-69 267.7 268 53.4
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.0e-69 267.7 271 52.0
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.6e-67 260.4 197 69.0
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.7e-61 240.4 242 51.2
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 2.9e-61 239.6 270 51.1
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 3.3e-57 226.1 255 53.3
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 3.7e-56 222.6 136 78.7
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 8.0e-51 204.9 129 76.0
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.0e-50 204.5 150 70.7
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 9.1e-47 191.4 152 63.2
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 3.1e-39 166.4 128 70.3
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.6e-27 127.5 330 28.8
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 3.2e-23 113.2 74 74.3
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 6.8e-18 95.5 88 54.5
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 9.8e-17 91.7 96 54.2
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 9.2e-15 85.1 71 57.7
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 6.0e-14 82.4 91 51.6
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 4.7e-11 72.8 90 52.2
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 8.0e-11 72.0 80 52.5
SHI26932 Sapria himalayana HOM05D009124 ORTHO05D012381 2.4e-07 60.5 70 45.7
Ca_04590_v3 Cicer arietinum L. HOM05D005748 ORTHO05D007123 3.2e-07 60.1 151 32.5
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 9.2e-07 58.5 130 33.8
PSO478G3396 Papaver somniferum HOM05D005748 ORTHO05D007123 1.2e-06 58.2 120 39.2
CiPaw.06G069600 Carya illinoinensis HOM05D005748 ORTHO05D007123 7.8e-06 55.5 123 34.1


User provided reference genes

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