Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.5e-234 815.1 407 100.0
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.0e-183 646.0 438 76.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 9.0e-152 540.8 438 65.1
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 1.1e-149 533.9 438 63.9
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 6.2e-137 491.5 436 60.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 1.6e-132 476.9 440 57.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 3.5e-132 475.7 438 58.4
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 6.0e-132 474.9 438 58.9
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 1.8e-131 473.4 438 57.3
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 3.0e-131 472.6 438 56.8
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 7.4e-130 468.0 438 58.0
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 1.4e-128 463.8 438 56.4
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 1.8e-128 463.4 437 56.5
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 4.5e-127 458.8 436 56.7
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 1.0e-126 457.6 436 55.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 1.0e-126 457.6 438 55.5
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 3.5e-124 449.1 437 54.0
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 2.3e-123 446.4 438 55.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 5.1e-123 445.3 438 53.9
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 9.7e-122 441.0 437 53.3
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 2.2e-121 439.9 437 53.3
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 6.3e-121 438.3 437 53.8
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 6.3e-121 438.3 438 52.7
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 1.8e-120 436.8 437 53.5
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 6.9e-120 434.9 431 52.2
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 9.0e-120 434.5 437 53.1
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 6.5e-118 428.3 437 52.9
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 1.1e-117 427.6 436 51.6
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.1e-114 417.5 440 50.2
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 5.7e-114 415.2 437 50.1
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 3.7e-113 412.5 437 51.0
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.4e-112 410.6 437 50.3
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 4.1e-112 409.1 539 47.5
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.2e-111 407.5 439 49.0
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.5e-111 405.6 437 51.0
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 2.2e-110 403.3 435 52.2
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.9e-110 402.9 431 51.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 3.8e-110 402.5 438 50.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 3.8e-110 402.5 435 49.4
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 8.5e-110 401.4 437 50.6
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 8.5e-110 401.4 437 50.6
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 1.4e-109 400.6 432 49.5
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 4.2e-109 399.1 437 50.6
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 3.0e-107 392.9 437 49.9
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 5.1e-107 392.1 438 49.1
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 8.8e-107 391.3 436 50.0
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 1.1e-106 391.0 435 49.9
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 1.5e-106 390.6 477 46.1
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 3.3e-106 389.4 437 49.9
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 5.7e-106 388.7 431 50.6
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 1.3e-105 387.5 433 50.1
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 1.7e-105 387.1 442 49.5
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 1.7e-105 387.1 437 50.6
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 4.8e-105 385.6 435 48.0
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.8e-105 385.6 430 50.7
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 6.3e-105 385.2 440 47.7
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 3.1e-104 382.9 435 47.6
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 3.1e-104 382.9 437 48.5
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 1.5e-103 380.6 435 47.1
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.0e-103 380.2 436 47.9
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.6e-103 379.8 435 48.5
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 4.5e-103 379.0 435 48.3
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 4.5e-103 379.0 439 49.4
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 2.2e-102 376.7 437 48.3
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 3.8e-102 375.9 438 46.6
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 5.0e-102 375.6 438 47.5
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 8.5e-102 374.8 422 48.6
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 1.2e-100 370.9 417 46.8
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 3.0e-99 366.3 489 44.6
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 3.0e-99 366.3 435 46.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 3.9e-99 365.9 435 45.7
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 8.8e-99 364.8 437 46.7
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 5.7e-98 362.1 435 44.8
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 1.7e-97 360.5 435 45.7
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 4.8e-97 359.0 435 45.1
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 4.8e-97 359.0 435 45.3
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 4.8e-97 359.0 443 48.8
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 6.3e-97 358.6 435 44.8
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 6.3e-97 358.6 435 44.8
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.1e-96 356.3 434 44.2
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 9.1e-96 354.8 439 47.4
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 1.6e-95 354.0 441 46.7
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.0e-94 351.3 437 45.8
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 2.2e-94 350.1 451 45.9
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 1.0e-91 341.3 437 43.7
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 3.0e-91 339.7 437 43.9
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 6.7e-91 338.6 435 44.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.3e-89 334.3 414 44.0
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 4.8e-89 332.4 431 42.2
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.6e-84 316.2 450 42.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 7.5e-82 308.5 429 41.7
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 2.2e-81 307.0 443 41.5
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 7.7e-79 298.5 447 39.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.3e-78 297.7 354 48.0
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 8.9e-75 285.0 447 40.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 5.4e-72 275.8 286 53.8
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 5.0e-70 269.2 351 43.9
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.2e-68 264.6 369 44.2
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 9.8e-66 255.0 414 36.5
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 9.8e-58 228.4 270 51.5
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 9.8e-58 228.4 365 37.3
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.7e-54 217.6 463 32.2
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 6.2e-52 209.1 159 68.6
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 5.2e-43 179.5 446 31.2
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 3.4e-42 176.8 426 31.9
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 3.9e-38 163.3 103 70.9
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 3.2e-32 143.7 86 74.4
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 6.4e-25 119.4 268 32.8
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.4e-24 117.5 83 65.1
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 5.1e-22 109.8 177 40.7
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 3.3e-21 107.1 181 36.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 9.6e-21 105.5 76 55.3
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.1e-19 102.1 119 54.6
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.1e-16 92.0 155 36.1
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 2.4e-11 74.3 77 53.2
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 5.3e-11 73.2 121 41.3
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.0e-09 68.9 48 62.5
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 2.5e-08 64.3 64 50.0
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 7.9e-07 59.3 64 51.6
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.0e-06 58.9 39 66.7
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.0e-06 58.9 39 66.7


User provided reference genes

Program Settings