Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0184 Trochodendron aralioides HOM05D000350 ORTHO05D000228 2.7e-92 342.0 178 100.0
TAR381G1380 Trochodendron aralioides HOM05D000350 ORTHO05D000228 1.7e-67 259.6 179 80.4
Nn5g27611 Nelumbo nucifera HOM05D000350 ORTHO05D000228 3.5e-60 235.3 176 72.7
Haze_01821 Corylus avellana HOM05D000350 ORTHO05D000228 2.6e-47 192.6 177 65.5
Cfa005483 Carpinus fangiana HOM05D000350 ORTHO05D000228 3.4e-47 192.2 176 65.9
Thecc.02G025500 Theobroma cacao HOM05D000350 ORTHO05D000228 1.3e-46 190.3 174 64.4
CiPaw.06G143600 Carya illinoinensis HOM05D000350 ORTHO05D000228 8.4e-46 187.6 176 62.5
COL.COLO4_17758 Corchorus olitorius HOM05D000350 ORTHO05D000228 2.4e-45 186.0 174 62.6
Duzib248G0668 Durio zibethinus HOM05D000350 ORTHO05D000228 7.9e-44 181.0 174 61.5
MD15G1431700 Malus domestica HOM05D000350 ORTHO05D000228 1.1e-42 177.2 181 60.8
Duzib132G0811 Durio zibethinus HOM05D000350 ORTHO05D000228 1.5e-42 176.8 175 60.6
MBI17_g09748_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 6.2e-41 171.4 142 68.3
MBI17_g44301_MAGBIO Magnolia biondii HOM05D000350 ORTHO05D000228 6.2e-41 171.4 142 68.3
CSS0012847 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 8.2e-41 171.0 177 59.3
CSS0019031 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 1.1e-40 170.6 179 58.7
Gohir.A01G182200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.4e-40 169.5 179 59.8
Gohir.D01G173300 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.4e-40 169.5 179 59.8
Gorai.002G215000 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.4e-40 169.5 179 59.8
QL02p099882 Quercus lobata HOM05D000350 ORTHO05D000228 4.0e-40 168.7 184 63.0
Dinv01846 Davidia involucrata HOM05D000350 ORTHO05D000228 5.8e-39 164.9 180 58.3
MD08G1240000 Malus domestica HOM05D000350 ORTHO05D000228 1.3e-38 163.7 182 57.1
Gohir.A04G130000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 1.7e-38 163.3 174 57.5
Gorai.012G166500 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.2e-38 162.9 174 57.5
CDE08G0860 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 3.8e-38 162.2 176 56.8
Dinv19395 Davidia involucrata HOM05D000350 ORTHO05D000228 3.8e-38 162.2 175 56.6
Gohir.D04G175200 Gossypium hirsutum HOM05D000350 ORTHO05D000228 3.8e-38 162.2 174 56.9
CiPaw.05G051300 Carya illinoinensis HOM05D000350 ORTHO05D000228 6.5e-38 161.4 157 63.7
TWI59G0579 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 8.4e-38 161.0 176 54.0
CDE06G0139 Ceratophyllum demersum HOM05D000350 ORTHO05D000228 1.9e-37 159.8 177 55.9
Cpa.g.sc30.48 Carica papaya HOM05D000350 ORTHO05D000228 4.2e-37 158.7 173 55.5
Lj5P261T19 Lonicera japonica HOM05D000350 ORTHO05D000228 5.5e-37 158.3 163 58.3
Rhsim11G0125700 Rhododendron simsii HOM05D000350 ORTHO05D000228 7.1e-37 157.9 188 58.5
Manes.10G120400 Manihot esculenta HOM05D000350 ORTHO05D000228 1.6e-36 156.8 178 57.3
Prupe.1G576500 Prunus persica HOM05D000350 ORTHO05D000228 2.1e-36 156.4 182 57.1
Nitab4.5_0007913g0020 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.7e-36 156.0 184 52.2
Hma1.2p1_1108F.1_g257880 Hydrangea macrophylla HOM05D000350 ORTHO05D000228 6.0e-36 154.8 179 57.0
DCAR_006683 Daucus carota HOM05D000350 ORTHO05D000228 3.0e-35 152.5 179 57.0
PGSC0003DMG400024928 Solanum tuberosum HOM05D000350 ORTHO05D000228 5.1e-35 151.8 163 55.8
Oeu000125.1 Olea europaea HOM05D000350 ORTHO05D000228 1.5e-34 150.2 186 54.3
Cc02_g22960 Coffea canephora HOM05D000350 ORTHO05D000228 5.7e-34 148.3 190 54.2
TWI23G1234 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 1.4e-32 143.7 158 56.3
Oeu036680.2 Olea europaea HOM05D000350 ORTHO05D000228 4.1e-32 142.1 180 53.3
TWI14G0578 Tripterygium wilfordii HOM05D000350 ORTHO05D000228 5.3e-32 141.7 156 53.2
Manes.07G022400 Manihot esculenta HOM05D000350 ORTHO05D000228 9.0e-32 141.0 177 51.4
Nitab4.5_0000948g0150 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.0e-30 137.5 184 50.0
Actinidia39014 Actinidia chinensis HOM05D000350 ORTHO05D000228 2.2e-30 136.3 192 49.0
CANSAT54G2211 Cannabis sativa HOM05D000350 ORTHO05D000228 2.2e-30 136.3 172 53.5
Potri.004G222100 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.8e-30 135.6 195 52.3
Lsat_1_v5_gn_5_103680 Lactuca sativa HOM05D000350 ORTHO05D000228 8.5e-30 134.4 189 51.9
Sabra01G0168200 Salix brachista HOM05D000350 ORTHO05D000228 2.5e-29 132.9 191 52.9
HanXRQChr10g0294511 Helianthus annuus HOM05D000350 ORTHO05D000228 1.0e-27 127.5 156 55.1
Sopen01g046180 Solanum pennellii HOM05D000350 ORTHO05D000228 3.9e-27 125.6 161 49.7
MSTRG.5217 Avicennia marina HOM05D000350 ORTHO05D000228 5.1e-27 125.2 186 48.9
CAN.G798.44 Capsicum annuum HOM05D000350 ORTHO05D000228 6.7e-27 124.8 154 50.6
Atru.chr6.722 Acer truncatum HOM05D000350 ORTHO05D000228 8.8e-27 124.4 178 46.6
Atru.chr6.728 Acer truncatum HOM05D000350 ORTHO05D000228 8.8e-27 124.4 178 46.6
Sed0024468 Sechium edule HOM05D000350 ORTHO05D000228 4.3e-26 122.1 143 56.6
Actinidia00187 Actinidia chinensis HOM05D000350 ORTHO05D000228 1.3e-25 120.6 193 46.6
ATR0584G103 Amborella trichopoda HOM05D000350 ORTHO05D000228 1.7e-25 120.2 164 51.8
HPP92_004434 Vanilla planifolia HOM05D000350 ORTHO05D000228 1.8e-24 116.7 142 49.3
HPP92_027800 Vanilla planifolia HOM05D000350 ORTHO05D000228 3.1e-24 115.9 142 49.3
arahy.Tifrunner.gnm1.ann1.22FU97 Arachis hypogaea HOM05D000350 ORTHO05D000228 9.1e-24 114.4 149 51.0
Migut.B00803 Erythranthe guttata HOM05D000350 ORTHO05D000228 4.5e-23 112.1 153 49.7
arahy.Tifrunner.gnm1.ann1.ABQ1RQ Arachis hypogaea HOM05D000350 ORTHO05D000228 7.7e-23 111.3 149 50.3
MSTRG.16500 Avicennia marina HOM05D000350 ORTHO05D000228 3.8e-22 109.0 189 44.4
MSTRG.16501 Avicennia marina HOM05D000350 ORTHO05D000228 3.8e-22 109.0 189 44.4
SEGI_38392 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 1.9e-21 106.7 200 46.5
Dinv15058 Davidia involucrata HOM05D000350 ORTHO05D000228 3.2e-21 105.9 141 50.4
ECA234G4001 Erigeron canadensis HOM05D000350 ORTHO05D000228 7.2e-21 104.8 151 53.0
Phvul.006G217800 Phaseolus vulgaris HOM05D000350 ORTHO05D000228 9.4e-21 104.4 160 45.0
Glyma.16G004300 Glycine max HOM05D000350 ORTHO05D000228 1.2e-20 104.0 150 44.7
MSTRG.25458 Avicennia marina HOM05D000350 ORTHO05D000228 1.6e-20 103.6 178 41.6
VMungo0540G0398 Vigna mungo HOM05D000350 ORTHO05D000228 1.6e-20 103.6 164 43.3
Ciclev10000702m.g Citrus clementina HOM05D000350 ORTHO05D000228 4.7e-20 102.1 163 47.2
Aqoxy6G00142 Aquilegia oxysepala HOM05D000350 ORTHO05D000228 1.1e-18 97.4 179 40.2
Lj6g0006864 Lotus japonicus HOM05D000350 ORTHO05D000228 1.5e-18 97.1 143 48.3
Gohir.A05G273600 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.6e-18 96.3 185 42.2
Gorai.009G289000 Gossypium raimondii HOM05D000350 ORTHO05D000228 2.6e-18 96.3 185 42.2
Medtr2g006150 Medicago truncatula HOM05D000350 ORTHO05D000228 4.4e-18 95.5 180 41.7
Sabra13G0094600 Salix brachista HOM05D000350 ORTHO05D000228 1.7e-17 93.6 185 45.4
Gohir.D05G276000 Gossypium hirsutum HOM05D000350 ORTHO05D000228 2.8e-17 92.8 185 41.1
Potri.013G110700 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.7e-17 92.4 185 44.9
Potri.019G081800 Populus trichocarpa HOM05D000350 ORTHO05D000228 3.7e-17 92.4 182 42.3
Thecc.08G186000 Theobroma cacao HOM05D000350 ORTHO05D000228 3.7e-17 92.4 184 41.3
Duzib116G0923 Durio zibethinus HOM05D000350 ORTHO05D000228 6.3e-17 91.7 185 40.5
Sabra19G0093400 Salix brachista HOM05D000350 ORTHO05D000228 1.1e-16 90.9 182 43.4
Oeu039152.1 Olea europaea HOM05D000350 ORTHO05D000228 1.8e-16 90.1 184 41.3
Duzib177G0411 Durio zibethinus HOM05D000350 ORTHO05D000228 2.4e-16 89.7 185 40.0
Cc00_g06580 Coffea canephora HOM05D000350 ORTHO05D000228 1.2e-15 87.4 188 42.0
Nitab4.5_0009198g0010 Nicotiana tabacum HOM05D000350 ORTHO05D000228 2.0e-15 86.7 186 40.9
Pp3c10_14310 Physcomitrium patens HOM05D000350 ORTHO05D000228 2.0e-15 86.7 215 40.9
Manes.18G103100 Manihot esculenta HOM05D000350 ORTHO05D000228 3.4e-15 85.9 179 40.8
Oeu021221.1 Olea europaea HOM05D000350 ORTHO05D000228 3.4e-15 85.9 184 41.3
ClCG11G013380 Citrullus lanatus HOM05D000350 ORTHO05D000228 4.5e-15 85.5 181 41.4
SGA_v2.0_scaffold24G10586 Striga asiatica HOM05D000350 ORTHO05D000228 4.5e-15 85.5 138 42.8
Cpa.g.sc66.26 Carica papaya HOM05D000350 ORTHO05D000228 7.7e-15 84.7 151 42.4
Psat1g221880 Pisum sativum HOM05D000350 ORTHO05D000228 1.7e-14 83.6 185 40.0
Mapoly0068s0102 Marchantia polymorpha HOM05D000350 ORTHO05D000228 6.5e-14 81.6 177 42.9
Nitab4.5_0000365g0240 Nicotiana tabacum HOM05D000350 ORTHO05D000228 1.1e-13 80.9 164 38.4
Ca_00051_v3 Cicer arietinum L. HOM05D000350 ORTHO05D000228 1.9e-13 80.1 148 43.2
Migut.C01285 Erythranthe guttata HOM05D000350 ORTHO05D000228 1.9e-13 80.1 138 40.6
Glyma.12G168300 Glycine max HOM05D000350 ORTHO05D000228 3.2e-13 79.3 150 42.0
Lalb_Chr20g0123661 Lupinus albus HOM05D000350 ORTHO05D000228 3.2e-13 79.3 165 40.0
DCAR_025352 Daucus carota HOM05D000350 ORTHO05D000228 4.2e-13 79.0 169 38.5
CsaV3_5G029900 Cucumis sativus L. HOM05D000350 ORTHO05D000228 5.5e-13 78.6 177 40.1
Peaxi162Scf00391g00048 Petunia axillaris HOM05D000350 ORTHO05D000228 3.6e-12 75.9 182 37.9
PGSC0003DMG400009276 Solanum tuberosum HOM05D000350 ORTHO05D000228 3.6e-12 75.9 149 38.3
Pp3c10_20400 Physcomitrium patens HOM05D000350 ORTHO05D000228 6.1e-12 75.1 214 37.9
GSVIVG01023283001 Vitis vinifera HOM05D000350 ORTHO05D000228 6.1e-12 75.1 110 41.8
AagrBONN_evm.TU.Sc2ySwM_344.85 Anthoceros agrestis HOM05D026980 ORTHO05D000228 8.0e-12 74.7 202 40.1
Nitab4.5_0001082g0060 Nicotiana tabacum HOM05D000350 ORTHO05D000228 3.0e-11 72.8 163 38.0
Nitab4.5_0000303g0270 Nicotiana tabacum HOM05D000350 ORTHO05D000228 8.8e-11 71.2 179 35.2
PGR042G1746 Punica granatum HOM05D000350 ORTHO05D000228 8.8e-11 71.2 147 38.8
CSS0010873 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 2.6e-10 69.7 153 37.3
CSS0021064 Camellia sinensis var. sinensis HOM05D000350 ORTHO05D000228 2.6e-10 69.7 153 37.3
Pp3c3_24660 Physcomitrium patens HOM05D000350 ORTHO05D000228 2.6e-10 69.7 217 36.4
Manes.02G194200 Manihot esculenta HOM05D000350 ORTHO05D000228 9.7e-10 67.8 126 40.5
Peaxi162Scf00268g00069 Petunia axillaris HOM05D000350 ORTHO05D000228 9.7e-10 67.8 185 35.1
Oeu024889.1 Olea europaea HOM05D000350 ORTHO05D000228 1.3e-09 67.4 155 37.4
MELO3C011835.2 Cucumis melo HOM05D000350 ORTHO05D000228 1.7e-09 67.0 149 40.3
BraA09t37482Z Brassica rapa HOM05D000350 ORTHO05D000228 2.2e-09 66.6 156 39.1
Sopen11g010700 Solanum pennellii HOM05D000350 ORTHO05D000228 2.2e-09 66.6 135 40.0
SEGI_17926 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 2.8e-09 66.2 218 38.1
Solyc11g020670.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 3.7e-09 65.9 135 40.0
A09p18560 Brassica napus HOM05D000350 ORTHO05D000228 4.8e-09 65.5 158 38.6
Carub.0002s0652 Capsella rubella HOM05D000350 ORTHO05D000228 8.2e-09 64.7 183 35.5
BcaC04g22116 Brassica carinata HOM05D000350 ORTHO05D000228 1.1e-08 64.3 157 38.2
C09p23170 Brassica napus HOM05D000350 ORTHO05D000228 1.1e-08 64.3 157 38.2
BolC9t55236H Brassica oleracea HOM05D000350 ORTHO05D000228 1.1e-08 64.3 157 38.2
Eucgr.F02587 Eucalyptus grandis HOM05D000350 ORTHO05D000228 1.4e-08 63.9 167 36.5
unitig_578.g16347 Utricularia gibba HOM05D000350 ORTHO05D000228 1.4e-08 63.9 180 32.2
Solyc06g065190.1 Solanum lycopersicum HOM05D000350 ORTHO05D000228 2.4e-08 63.2 137 35.0
Sopen06g023690 Solanum pennellii HOM05D000350 ORTHO05D000228 2.4e-08 63.2 137 35.0
THA.LOC104823695 Tarenaya hassleriana HOM05D000350 ORTHO05D000228 3.1e-08 62.8 145 35.9
PGSC0003DMG400026105 Solanum tuberosum HOM05D000350 ORTHO05D000228 5.3e-08 62.0 180 33.3
Oeu045941.1 Olea europaea HOM05D000350 ORTHO05D000228 7.0e-08 61.6 162 37.7
Aa31LG2G10990 Aethionema arabicum HOM05D000350 ORTHO05D000228 1.2e-07 60.8 184 35.9
Thhalv10023507m.g Eutrema salsugineum HOM05D000350 ORTHO05D000228 1.6e-07 60.5 157 35.0
CAN.G308.67 Capsicum annuum HOM05D000350 ORTHO05D000228 5.9e-07 58.5 104 38.5
Peaxi162Scf00011g00819 Petunia axillaris HOM05D000350 ORTHO05D000228 7.7e-07 58.2 84 42.9
AT1G58100 Arabidopsis thaliana HOM05D000350 ORTHO05D000228 2.2e-06 56.6 159 36.5
SEGI_23184 Sequoiadendron giganteum HOM05D000350 ORTHO05D000228 2.2e-06 56.6 191 33.5
CARHR053950 Cardamine hirsuta HOM05D000350 ORTHO05D000228 5.0e-06 55.5 148 37.8


User provided reference genes

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