Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.5e-61 238.0 115 100.0
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.7e-52 209.1 113 88.5
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 4.9e-47 191.0 114 78.1
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 8.4e-47 190.3 112 79.5
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 4.2e-46 188.0 112 82.1
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 2.7e-45 185.3 111 80.2
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.0e-44 183.3 109 78.0
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 3.0e-44 181.8 112 75.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 5.1e-44 181.0 111 75.7
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 5.1e-44 181.0 109 78.0
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 8.7e-44 180.3 112 75.9
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 8.7e-44 180.3 111 79.3
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.1e-43 179.9 112 74.1
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.1e-43 179.9 134 68.7
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.9e-43 179.1 111 74.8
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.3e-43 178.3 111 74.8
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.3e-43 178.3 111 74.8
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.3e-43 178.3 111 74.8
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-43 177.9 111 74.8
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-43 177.6 111 74.8
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.6e-43 177.6 111 73.9
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 7.3e-43 177.2 111 75.7
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 9.6e-43 176.8 113 72.6
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.6e-43 176.8 111 73.9
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.3e-42 176.4 111 73.9
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 1.6e-42 176.0 111 75.7
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-42 175.3 111 73.9
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 8.1e-42 173.7 112 71.4
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.1e-41 173.3 113 71.7
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.1e-41 173.3 112 74.1
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.8e-41 172.6 109 70.6
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 3.1e-41 171.8 112 71.4
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 3.1e-41 171.8 112 72.3
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.0e-41 171.4 118 70.3
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 6.9e-41 170.6 113 70.8
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 2.0e-40 169.1 110 75.5
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 3.4e-40 168.3 113 69.9
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 5.8e-40 167.5 123 67.5
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 7.6e-40 167.2 110 72.7
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.9e-40 166.8 111 71.2
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-39 166.4 111 72.1
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.3e-39 166.4 111 71.2
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.3e-39 166.4 110 74.5
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 2.2e-39 165.6 111 71.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 2.2e-39 165.6 110 69.1
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.9e-39 165.2 111 72.1
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 4.9e-39 164.5 113 70.8
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.4e-39 164.1 111 70.3
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 8.4e-39 163.7 111 70.3
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.4e-39 163.7 101 74.3
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.1e-38 163.3 111 69.4
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.4e-38 162.9 110 67.3
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.4e-38 162.9 113 68.1
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 4.2e-38 161.4 115 68.7
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 5.5e-38 161.0 111 67.6
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 5.5e-38 161.0 111 67.6
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 5.5e-38 161.0 110 69.1
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.2e-37 159.8 106 69.8
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 3.5e-37 158.3 110 66.4
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.3e-36 156.4 116 65.5
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 1.8e-36 156.0 109 66.1
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 2.3e-36 155.6 113 66.4
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 5.1e-36 154.5 112 66.1
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 6.7e-36 154.1 110 66.4
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 8.7e-36 153.7 141 54.6
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 2.5e-35 152.1 113 63.7
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.3e-35 151.8 123 59.3
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 1.3e-34 149.8 110 65.5
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 3.7e-34 148.3 110 64.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 8.1e-34 147.1 113 64.6
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 8.1e-34 147.1 108 63.9
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.1e-33 146.7 114 61.4
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 4.0e-33 144.8 114 65.8
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 7.6e-32 140.6 117 59.8
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 2.2e-31 139.0 111 64.0
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 3.8e-31 138.3 111 60.4
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 3.8e-31 138.3 111 60.4
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 3.8e-31 138.3 111 61.3
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 4.9e-31 137.9 83 78.3
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.1e-30 136.7 110 61.8
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 2.1e-29 132.5 113 61.9
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.0e-28 130.2 86 69.8
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 5.1e-28 127.9 199 38.2
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 5.1e-28 127.9 112 54.5
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-27 126.3 78 74.4
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 2.5e-27 125.6 109 62.4
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 4.3e-27 124.8 108 58.3
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 2.8e-26 122.1 112 58.0
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 6.3e-26 120.9 112 54.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 6.3e-26 120.9 113 54.9
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.4e-25 119.8 111 56.8
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 5.3e-25 117.9 112 53.6
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 6.9e-25 117.5 110 55.5
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.0e-25 117.1 78 71.8
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 5.9e-24 114.4 112 52.7
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 7.6e-24 114.0 112 50.9
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.0e-23 113.6 112 50.9
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 1.0e-23 113.6 111 53.2
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 1.3e-23 113.2 111 53.2
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 8.4e-23 110.5 112 50.9
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 1.4e-22 109.8 102 52.9
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.4e-22 109.8 111 45.9
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.9e-22 109.4 87 59.8
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.5e-22 109.0 112 50.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 4.2e-22 108.2 113 54.0
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 4.2e-22 108.2 82 61.0
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 7.2e-22 107.5 112 50.0
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 1.6e-21 106.3 66 72.7
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 3.5e-21 105.1 112 47.3
CDE08G1297 Ceratophyllum demersum HOM05D005439 ORTHO05D006793 4.6e-21 104.8 75 62.7
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 7.9e-21 104.0 111 52.3
TPR.G39010 Trifolium pratense HOM05D005439 ORTHO05D006793 7.9e-21 104.0 67 71.6
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 3.0e-20 102.1 111 50.5
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 5.1e-20 101.3 110 50.9
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 5.1e-20 101.3 111 50.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.1e-19 100.1 111 47.7
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.1e-19 100.1 112 50.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.1e-19 100.1 110 48.2
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 2.8e-18 95.5 74 63.5
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.8e-17 92.8 62 71.0
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.2e-16 90.1 111 48.6
VMungo1215G1396 Vigna mungo HOM05D005439 ORTHO05D006793 2.0e-16 89.4 93 50.5
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 4.5e-16 88.2 84 53.6
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 7.7e-16 87.4 111 43.2
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 5.0e-15 84.7 61 60.7
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 1.8e-12 76.3 114 39.5
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.0e-12 75.5 48 64.6
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.5e-11 72.4 83 45.8
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 5.7e-11 71.2 46 73.9
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 2.8e-10 68.9 48 66.7
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.4e-09 66.6 48 64.6
SGA_v2.0_scaffold4G02008 Striga asiatica HOM05D000346 ORTHO05D000326 1.2e-08 63.5 48 62.5
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 2.0e-08 62.8 44 72.7
RcHm_v2.0_Chr5g0034431 Rosa chinensis HOM05D005439 ORTHO05D006793 3.4e-08 62.0 59 54.2
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 1.0e-07 60.5 45 62.2
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.9e-07 58.9 76 42.1
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.8e-07 58.5 76 42.1
FAN09G3549 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.0e-07 58.2 49 53.1
TPR.G35670 Trifolium pratense HOM05D005439 ORTHO05D006793 7.2e-06 54.3 29 79.3


User provided reference genes

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