Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0168 Trochodendron aralioides HOM05D005302 ORTHO05D006422 0.0e+00 1366.7 643 100.0
Nn2g11666 Nelumbo nucifera HOM05D005302 ORTHO05D006422 5.6e-249 864.4 511 79.1
Dinv14245 Davidia involucrata HOM05D005302 ORTHO05D006422 8.6e-242 840.5 515 75.9
Actinidia13324 Actinidia chinensis HOM05D005302 ORTHO05D006422 3.9e-234 815.1 515 74.0
TWI34G0390 Tripterygium wilfordii HOM05D005302 ORTHO05D006422 3.6e-232 808.5 466 79.2
Eucgr.C02909 Eucalyptus grandis HOM05D005302 ORTHO05D006422 4.0e-231 805.1 481 76.5
CiPaw.07G205300 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.2e-230 803.5 489 76.3
CiPaw.08G024700 Carya illinoinensis HOM05D005302 ORTHO05D006422 1.5e-230 803.1 476 77.3
CSS0024291 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 9.9e-230 800.4 452 80.5
CSS0027627 Camellia sinensis var. sinensis HOM05D005302 ORTHO05D006422 9.9e-230 800.4 452 80.5
Aqoxy7G03804 Aquilegia oxysepala HOM05D005302 ORTHO05D006422 3.8e-229 798.5 476 77.3
Hma1.2p1_0393F.1_g143080 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.1e-228 797.0 513 71.9
Gorai.009G050600 Gossypium raimondii HOM05D005302 ORTHO05D006422 5.4e-228 794.7 477 75.3
FvH4_2g35770 Fragaria vesca HOM05D005302 ORTHO05D006422 9.3e-228 793.9 464 77.8
Rhsim02G0179400 Rhododendron simsii HOM05D005302 ORTHO05D006422 2.1e-227 792.7 462 78.6
Gohir.D05G049300 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.0e-227 791.2 477 74.8
Atru.chr7.2133 Acer truncatum HOM05D005302 ORTHO05D006422 1.7e-226 789.6 450 79.6
QL12p029391 Quercus lobata HOM05D005302 ORTHO05D006422 2.3e-226 789.3 505 72.7
GSVIVG01035645001 Vitis vinifera HOM05D005302 ORTHO05D006422 3.9e-226 788.5 466 76.0
Prupe.1G450300 Prunus persica HOM05D005302 ORTHO05D006422 5.6e-225 784.6 460 78.0
Haze_21877 Corylus avellana HOM05D005302 ORTHO05D006422 7.3e-225 784.3 532 70.5
PGR044G1364 Punica granatum HOM05D005302 ORTHO05D006422 1.3e-224 783.5 472 75.0
RcHm_v2.0_Chr6g0306001 Rosa chinensis HOM05D005302 ORTHO05D006422 2.1e-224 782.7 481 75.7
Duzib150G0232 Durio zibethinus HOM05D005302 ORTHO05D006422 4.0e-223 778.5 468 74.8
Cc08_g09240 Coffea canephora HOM05D005302 ORTHO05D006422 6.9e-223 777.7 487 73.7
FAN27G3010 Fragaria x ananassa HOM05D005302 ORTHO05D006422 4.5e-222 775.0 464 76.5
Glyma.06G084100 Glycine max HOM05D005302 ORTHO05D006422 2.9e-221 772.3 473 75.5
MD15G1095400 Malus domestica HOM05D005302 ORTHO05D006422 2.9e-221 772.3 428 81.8
COL.COLO4_18671 Corchorus olitorius HOM05D005302 ORTHO05D006422 4.9e-221 771.5 469 75.3
Glyma.04G082500 Glycine max HOM05D005302 ORTHO05D006422 4.9e-221 771.5 442 78.7
Thecc.09G042800 Theobroma cacao HOM05D005302 ORTHO05D006422 1.1e-220 770.4 508 69.9
CANSAT25G0630 Cannabis sativa HOM05D005302 ORTHO05D006422 2.4e-220 769.2 450 77.8
PSO210G3865 Papaver somniferum HOM05D005302 ORTHO05D006422 5.4e-220 768.1 513 69.8
Gohir.A07G022700 Gossypium hirsutum HOM05D005302 ORTHO05D006422 4.6e-219 765.0 495 71.5
Ciclev10008169m.g Citrus clementina HOM05D005302 ORTHO05D006422 1.8e-218 763.1 430 78.6
Medtr3g110160 Medicago truncatula HOM05D005302 ORTHO05D006422 3.0e-218 762.3 434 78.1
PSO210G0275 Papaver somniferum HOM05D005302 ORTHO05D006422 3.9e-218 761.9 513 69.8
Gohir.D07G026100 Gossypium hirsutum HOM05D005302 ORTHO05D006422 6.7e-218 761.1 503 69.8
Manes.16G072000 Manihot esculenta HOM05D005302 ORTHO05D006422 6.7e-218 761.1 495 70.5
Potri.018G040200 Populus trichocarpa HOM05D005302 ORTHO05D006422 8.7e-218 760.8 494 70.6
Gorai.001G027200 Gossypium raimondii HOM05D005302 ORTHO05D006422 4.3e-217 758.4 466 73.8
Gohir.A05G047400 Gossypium hirsutum HOM05D005302 ORTHO05D006422 5.6e-217 758.1 456 74.6
MELO3C011150.2 Cucumis melo HOM05D005302 ORTHO05D006422 1.3e-216 756.9 512 68.0
HanXRQChr08g0236291 Helianthus annuus HOM05D005302 ORTHO05D006422 2.1e-216 756.1 429 78.6
CsaV3_2G030970 Cucumis sativus L. HOM05D005302 ORTHO05D006422 1.1e-215 753.8 521 67.6
MBI04_g05261_MAGBIO Magnolia biondii HOM05D005302 ORTHO05D006422 1.1e-215 753.8 571 63.9
Lalb_Chr08g0243151 Lupinus albus HOM05D005302 ORTHO05D006422 1.4e-215 753.4 434 76.7
MSTRG.11705 Avicennia marina HOM05D005302 ORTHO05D006422 3.1e-215 752.3 484 70.5
Phvul.009G108200 Phaseolus vulgaris HOM05D005302 ORTHO05D006422 4.0e-215 751.9 429 78.1
EL10Ac2g04046 Beta vulgaris HOM05D005302 ORTHO05D006422 2.0e-214 749.6 478 72.0
MD08G1115600 Malus domestica HOM05D005302 ORTHO05D006422 2.0e-214 749.6 439 77.4
VMungo1309G1003 Vigna mungo HOM05D005302 ORTHO05D006422 5.8e-214 748.0 429 77.2
ECA246G0277 Erigeron canadensis HOM05D005302 ORTHO05D006422 7.6e-214 747.7 437 76.0
Psat5g022320 Pisum sativum HOM05D005302 ORTHO05D006422 1.0e-213 747.3 461 73.5
Sp7g30530 Schrenkiella parvula HOM05D005302 ORTHO05D006422 1.7e-213 746.5 471 71.3
Ca_15604_v3 Cicer arietinum L. HOM05D005302 ORTHO05D006422 4.9e-213 745.0 423 79.0
Lj8C588T0 Lonicera japonica HOM05D005302 ORTHO05D006422 3.2e-212 742.3 522 69.0
Peaxi162Scf00822g00210 Petunia axillaris HOM05D005302 ORTHO05D006422 9.3e-212 740.7 427 76.1
Thhalv10025006m.g Eutrema salsugineum HOM05D005302 ORTHO05D006422 1.0e-210 737.3 493 68.8
Nitab4.5_0010908g0010 Nicotiana tabacum HOM05D005302 ORTHO05D006422 1.3e-210 736.9 439 74.0
arahy.Tifrunner.gnm1.ann1.P7Z4SB Arachis hypogaea HOM05D005302 ORTHO05D006422 3.9e-210 735.3 425 77.4
DCAR_003119 Daucus carota HOM05D005302 ORTHO05D006422 3.9e-210 735.3 506 68.2
arahy.Tifrunner.gnm1.ann1.R6A5BY Arachis hypogaea HOM05D005302 ORTHO05D006422 1.1e-209 733.8 423 77.5
CARHR240760 Cardamine hirsuta HOM05D005302 ORTHO05D006422 1.9e-209 733.0 496 69.2
Lj1g0022106 Lotus japonicus HOM05D005302 ORTHO05D006422 3.3e-209 732.3 425 77.6
Sabra18G0040100 Salix brachista HOM05D005302 ORTHO05D006422 3.3e-209 732.3 491 70.3
CAN.G21.50 Capsicum annuum HOM05D005302 ORTHO05D006422 7.4e-209 731.1 427 75.2
FAN20G2881 Fragaria x ananassa HOM05D005302 ORTHO05D006422 9.6e-209 730.7 499 69.7
PGSC0003DMG400029051 Solanum tuberosum HOM05D005302 ORTHO05D006422 1.3e-208 730.3 438 74.9
Sed0007027 Sechium edule HOM05D005302 ORTHO05D006422 2.1e-208 729.6 436 73.6
Migut.A00220 Erythranthe guttata HOM05D005302 ORTHO05D006422 3.7e-208 728.8 474 69.2
Sopen08g022330 Solanum pennellii HOM05D005302 ORTHO05D006422 1.4e-207 726.9 438 74.9
AUR62009303 Chenopodium quinoa HOM05D005302 ORTHO05D006422 2.4e-207 726.1 499 67.5
FAN15G3230 Fragaria x ananassa HOM05D005302 ORTHO05D006422 2.4e-207 726.1 494 69.4
AL7G18970 Arabidopsis lyrata HOM05D005302 ORTHO05D006422 4.1e-207 725.3 485 68.7
Lsat_1_v5_gn_5_33600 Lactuca sativa HOM05D005302 ORTHO05D006422 4.1e-207 725.3 467 71.1
Carub.0007s0772 Capsella rubella HOM05D005302 ORTHO05D006422 5.3e-207 724.9 457 71.6
Solyc08g068570.4 Solanum lycopersicum HOM05D005302 ORTHO05D006422 5.3e-207 724.9 438 74.7
BolC7t46379H Brassica oleracea HOM05D005302 ORTHO05D006422 6.9e-207 724.5 472 70.1
C07p59340 Brassica napus HOM05D005302 ORTHO05D006422 1.2e-206 723.8 472 70.1
A03p61580 Brassica napus HOM05D005302 ORTHO05D006422 2.6e-206 722.6 473 70.6
BraA03t15200Z Brassica rapa HOM05D005302 ORTHO05D006422 2.6e-206 722.6 473 70.6
CDE08G0186 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 5.8e-206 721.5 488 66.8
SalBow4G1479 Salvia bowleyana HOM05D005302 ORTHO05D006422 7.6e-206 721.1 477 68.3
SGA_v2.0_scaffold103G29944 Striga asiatica HOM05D005302 ORTHO05D006422 1.3e-205 720.3 468 69.7
Aa31LG2G17190 Aethionema arabicum HOM05D005302 ORTHO05D006422 1.4e-204 716.8 466 70.0
AT4G32770 Arabidopsis thaliana HOM05D005302 ORTHO05D006422 2.5e-204 716.1 468 69.7
Os02g0276500 Oryza sativa ssp. japonica HOM05D005302 ORTHO05D006422 3.9e-202 708.8 425 74.4
CDE05G0893 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.5e-201 706.8 462 67.3
ATR0315G120 Amborella trichopoda HOM05D005302 ORTHO05D006422 9.0e-199 697.6 466 67.6
ClCG08G012300 Citrullus lanatus HOM05D005302 ORTHO05D006422 1.7e-197 693.3 520 64.0
unitig_32.g11070 Utricularia gibba HOM05D005302 ORTHO05D006422 1.6e-195 686.8 463 67.2
Oeu036363.2 Olea europaea HOM05D005302 ORTHO05D006422 3.3e-193 679.1 457 70.2
THA.LOC104803808 Tarenaya hassleriana HOM05D005302 ORTHO05D006422 1.4e-191 673.7 414 72.7
Nitab4.5_0000513g0060 Nicotiana tabacum HOM05D005302 ORTHO05D006422 3.4e-190 669.1 541 59.7
Hund19525 Selenicereus undatus HOM05D005302 ORTHO05D006422 6.5e-189 664.8 469 66.7
Cpa.g.sc7.259 Carica papaya HOM05D005302 ORTHO05D006422 2.5e-188 662.9 378 78.8
Sc23g0005290 Simmondsia chinensis HOM05D005302 ORTHO05D006422 2.7e-187 659.4 452 69.0
AUR62041718 Chenopodium quinoa HOM05D005302 ORTHO05D006422 4.1e-183 645.6 456 67.1
HPP92_005269 Vanilla planifolia HOM05D005302 ORTHO05D006422 8.5e-181 637.9 465 65.8
LjContig00226g0022694 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-180 637.5 380 76.1
LjContig00518g0000858 Lotus japonicus HOM05D005302 ORTHO05D006422 1.1e-180 637.5 380 76.1
Cfa013357 Carpinus fangiana HOM05D005302 ORTHO05D006422 5.5e-180 635.2 479 64.1
Cfa013434 Carpinus fangiana HOM05D005302 ORTHO05D006422 1.1e-177 627.5 349 80.5
Ah.16g105570 Amaranthus hybridus HOM05D005302 ORTHO05D006422 9.7e-177 624.4 372 76.9
Cfa013356 Carpinus fangiana HOM05D005302 ORTHO05D006422 7.7e-174 614.8 325 83.4
Lj1g0000494 Lotus japonicus HOM05D005302 ORTHO05D006422 6.5e-173 611.7 380 74.5
AagrBONN_evm.TU.Sc2ySwM_368.1981 Anthoceros agrestis HOM05D005302 ORTHO05D006422 1.2e-169 600.9 417 64.5
Haze_21992 Corylus avellana HOM05D005302 ORTHO05D006422 1.1e-167 594.3 518 57.3
vmacro11066 Vaccinium macrocarpon HOM05D005302 ORTHO05D006422 2.4e-167 593.2 408 69.4
Mapoly0027s0036 Marchantia polymorpha HOM05D005302 ORTHO05D006422 5.4e-167 592.0 430 62.8
Pp3c7_470 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.5e-164 583.9 471 58.0
Lj1g0015489 Lotus japonicus HOM05D005302 ORTHO05D006422 1.9e-164 583.6 425 65.6
Pp3c20_5100 Physcomitrium patens HOM05D005302 ORTHO05D006422 1.5e-148 530.8 453 55.0
Zm00001eb237270 Zea mays HOM05D005302 ORTHO05D006422 1.2e-147 527.7 320 72.5
Lj1g0026118 Lotus japonicus HOM05D005302 ORTHO05D006422 4.7e-147 525.8 426 61.3
SMO351G0603 Selaginella moellendorffii HOM05D005302 ORTHO05D006422 4.7e-147 525.8 396 59.3
Cc07_g15020 Coffea canephora HOM05D005302 ORTHO05D006422 5.8e-137 492.3 268 81.7
CBR_g222 Chara braunii HOM05D005302 ORTHO05D006422 1.4e-135 487.6 418 55.5
Hma1.2p1_1884F.1_g306470 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.3e-125 454.5 252 80.2
Lj7A704G80 Lonicera japonica HOM05D005302 ORTHO05D006422 1.2e-105 388.3 218 77.1
Cre01.g013801 Chlamydomonas reinhardtii HOM05D005302 ORTHO05D006422 1.7e-104 384.4 455 42.6
Hma1.2p1_1884F.1_g306480 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 4.3e-84 316.6 184 77.2
Lj7A704G81 Lonicera japonica HOM05D005302 ORTHO05D006422 1.3e-75 288.5 162 79.6
MCO11G337 Micromonas commoda HOM05D005302 ORTHO05D006422 2.9e-72 277.3 429 41.3
CDE05G2043 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 8.8e-69 265.8 431 36.9
Hma1.2p1_0393F.1_g143070 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 1.8e-66 258.1 148 77.0
Hma1.2p1_0393F.1_g143090 Hydrangea macrophylla HOM05D005302 ORTHO05D006422 7.7e-65 252.7 214 59.8
SEGI_29042 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 1.3e-56 225.3 110 86.4
Glyma.04G082300 Glycine max HOM05D005302 ORTHO05D006422 2.2e-56 224.6 176 60.2
FAN24G1627 Fragaria x ananassa HOM05D005302 ORTHO05D006422 1.2e-49 202.2 118 78.0
SEGI_31241 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 2.9e-48 197.6 148 58.8
Sabra18G0041600 Salix brachista HOM05D005302 ORTHO05D006422 1.8e-42 178.3 109 72.5
Potri.006G240100 Populus trichocarpa HOM05D005302 ORTHO05D006422 3.8e-40 170.6 185 49.7
SEGI_07805 Sequoiadendron giganteum HOM05D005302 ORTHO05D006422 8.6e-40 169.5 107 70.1
arahy.Tifrunner.gnm1.ann1.B6YE6K Arachis hypogaea HOM05D005302 ORTHO05D006422 1.3e-32 145.6 186 44.6
CDE05G1694 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 2.9e-19 101.3 61 70.5
Sabra18G0041700 Salix brachista HOM05D005302 ORTHO05D006422 6.0e-17 93.6 60 65.0
CDE02G1858 Ceratophyllum demersum HOM05D005302 ORTHO05D006422 1.3e-11 75.9 164 34.8
MBI05_g37668_MAGBIO Magnolia biondii HOM05D002821 ORTHO05D003072 5.1e-08 63.9 82 47.6
BcaC09g52073 Brassica carinata HOM05D002602 ORTHO05D002661 1.1e-07 62.8 41 63.4


User provided reference genes

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