Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.0e-245 852.0 439 100.0
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 6.2e-183 644.4 474 70.3
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 5.3e-182 641.3 396 80.1
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 9.0e-182 640.6 396 79.8
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.9e-179 632.9 470 72.3
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 9.3e-179 630.6 468 72.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 5.8e-173 611.3 404 76.0
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 6.4e-172 607.8 471 66.9
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 3.2e-171 605.5 469 67.2
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 4.2e-171 605.1 472 70.1
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 5.4e-171 604.7 469 69.1
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 7.1e-171 604.4 466 68.5
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.0e-169 599.0 467 67.5
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 5.1e-169 598.2 468 69.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 6.2e-167 591.3 468 66.7
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 4.0e-166 588.6 482 63.7
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 9.0e-166 587.4 469 67.4
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 1.2e-165 587.0 469 67.4
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 2.0e-165 586.3 412 72.6
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.6e-165 585.9 470 65.5
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 3.4e-165 585.5 466 66.5
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 1.3e-164 583.6 467 65.5
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 2.9e-164 582.4 429 68.8
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 4.9e-164 581.6 468 65.6
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 1.1e-163 580.5 458 65.3
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 5.5e-163 578.2 472 64.4
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 5.5e-163 578.2 459 67.3
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 7.1e-163 577.8 405 70.9
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 9.3e-163 577.4 469 65.7
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.6e-162 576.6 469 65.7
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.1e-162 576.2 466 65.5
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 2.7e-162 575.9 471 62.4
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 7.9e-162 574.3 455 64.8
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 7.9e-162 574.3 471 65.0
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 1.0e-161 573.9 466 64.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 1.8e-161 573.2 471 64.8
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.3e-161 572.8 469 65.2
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 3.0e-161 572.4 466 64.8
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 8.7e-161 570.9 468 65.8
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 8.7e-161 570.9 469 63.8
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.1e-160 570.5 384 73.2
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 1.9e-160 569.7 467 65.3
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 2.5e-160 569.3 384 72.9
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 4.3e-160 568.5 368 75.5
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.3e-160 568.5 383 72.1
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 5.6e-160 568.2 386 73.1
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 9.6e-160 567.4 402 70.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 2.1e-159 566.2 391 71.1
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 6.2e-159 564.7 386 72.0
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 8.2e-159 564.3 477 63.9
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 2.4e-158 562.8 466 64.2
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 4.0e-158 562.0 448 64.7
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 1.5e-157 560.1 396 71.0
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 2.6e-157 559.3 466 65.2
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 8.4e-156 554.3 401 69.6
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 1.1e-155 553.9 380 72.9
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.2e-155 552.4 471 63.3
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 7.1e-155 551.2 470 63.2
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 4.6e-154 548.5 416 67.5
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 2.3e-153 546.2 430 66.0
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 1.5e-152 543.5 335 80.0
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 4.3e-152 542.0 429 65.0
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 5.7e-152 541.6 466 63.1
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 7.4e-152 541.2 473 60.0
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 2.4e-150 536.2 474 62.2
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 6.9e-150 534.6 448 62.3
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 4.5e-149 531.9 397 67.3
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 4.5e-149 531.9 490 61.4
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.0e-148 530.8 396 66.4
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 8.5e-148 527.7 441 63.9
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 1.9e-147 526.6 399 65.7
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 2.5e-147 526.2 384 67.7
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 3.2e-147 525.8 506 57.3
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 4.2e-147 525.4 396 66.9
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 4.2e-147 525.4 447 61.7
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 7.2e-147 524.6 381 67.7
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 9.4e-147 524.2 368 70.4
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 2.7e-146 522.7 408 65.4
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.7e-146 522.7 428 64.3
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 2.5e-144 516.2 466 59.4
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 4.3e-144 515.4 384 66.1
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 1.7e-143 513.5 468 59.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 2.2e-143 513.1 341 74.2
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 1.2e-141 507.3 368 65.5
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 2.6e-141 506.1 416 64.2
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 4.5e-141 505.4 334 74.0
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 6.1e-138 495.0 449 57.0
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 1.1e-136 490.7 480 56.9
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.4e-134 483.0 459 59.0
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 2.9e-132 476.1 411 60.3
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.5e-131 473.8 333 70.9
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.5e-131 473.0 354 68.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 3.0e-129 466.1 318 72.3
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 2.4e-126 456.4 458 55.0
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 7.0e-126 454.9 435 58.2
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.9e-124 449.5 281 82.6
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 5.2e-121 438.7 458 55.2
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 3.7e-119 432.6 281 76.2
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 8.3e-119 431.4 388 58.8
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 3.5e-117 426.0 458 53.3
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 2.7e-114 416.4 458 52.2
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 2.6e-112 409.8 420 56.7
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 2.7e-109 399.8 358 56.4
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 5.0e-108 395.6 443 52.4
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 6.8e-105 385.2 227 94.7
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 3.7e-103 379.4 391 55.5
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 1.7e-100 370.5 314 65.3
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 1.1e-81 308.1 217 69.6
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 1.5e-80 304.3 384 42.4
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 2.0e-80 303.9 209 74.2
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 1.3e-79 301.2 361 46.5
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 3.5e-77 293.1 327 53.2
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.0e-76 290.0 288 56.6
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 6.2e-74 282.3 261 58.6
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.8e-73 280.8 157 85.4
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 1.8e-73 280.8 257 60.3
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 3.1e-73 280.0 262 58.0
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 7.6e-72 275.4 401 39.7
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.7e-71 274.2 177 73.4
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 4.9e-71 272.7 156 84.6
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.4e-70 270.4 262 57.3
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 8.4e-63 245.4 279 45.2
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 5.6e-59 232.6 188 62.2
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 2.7e-53 213.8 292 41.4
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-42 178.3 198 54.0
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 3.1e-41 173.7 210 49.5
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.9e-38 164.5 95 81.1
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 6.3e-34 149.4 88 77.3
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 8.5e-31 139.0 120 63.3
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 7.4e-27 125.9 75 80.0
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 1.0e-23 115.5 365 29.6
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 2.5e-22 110.9 67 80.6
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 7.9e-21 105.9 124 47.6
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 2.6e-19 100.9 140 47.1
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 1.2e-16 92.0 55 78.2
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 5.7e-11 73.2 347 23.6
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 6.3e-10 69.7 81 40.7
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 7.0e-09 66.2 38 73.7
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 2.2e-07 61.2 48 58.3
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 2.2e-07 61.2 39 69.2
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 1.5e-06 58.5 49 63.3
Lsat_1_v5_gn_3_115920 Lactuca sativa HOM05D005258 ORTHO05D006525 4.2e-06 57.0 97 42.3


User provided reference genes

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