Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.0e-115 419.1 209 100.0
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 8.3e-61 237.7 202 64.4
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 3.0e-42 176.0 145 63.4
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 4.4e-38 162.2 208 49.0
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 1.4e-36 157.1 210 48.1
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 9.3e-36 154.5 206 46.6
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 2.7e-35 152.9 203 47.8
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 2.7e-35 152.9 183 50.3
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 4.6e-35 152.1 202 47.5
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 7.8e-35 151.4 207 46.9
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.0e-34 151.0 203 46.8
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 2.3e-34 149.8 215 45.6
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 3.0e-34 149.4 206 48.1
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.9e-34 149.1 200 47.5
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 3.9e-34 149.1 202 47.5
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 5.1e-34 148.7 202 49.0
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 5.6e-33 145.2 201 46.8
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 5.6e-33 145.2 199 46.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 5.6e-33 145.2 201 46.3
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 5.6e-33 145.2 155 53.5
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 7.3e-33 144.8 201 43.8
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.6e-33 144.4 199 46.2
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 9.6e-33 144.4 199 46.2
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 9.6e-33 144.4 199 45.7
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.3e-32 144.1 151 57.0
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 1.6e-32 143.7 199 45.7
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.6e-32 143.7 199 45.7
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-32 143.3 206 44.2
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 3.6e-32 142.5 203 44.3
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 6.2e-32 141.7 226 40.7
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 1.1e-31 141.0 201 45.8
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 1.4e-31 140.6 206 42.2
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 5.3e-31 138.7 205 42.9
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 6.9e-31 138.3 199 46.2
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.2e-30 137.5 211 47.9
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 7.6e-30 134.8 203 45.3
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 7.6e-30 134.8 189 43.9
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 7.6e-30 134.8 201 44.3
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 9.9e-30 134.4 242 38.8
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.9e-29 132.9 155 49.0
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 3.8e-29 132.5 197 44.2
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.4e-29 131.7 203 40.9
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 1.1e-28 131.0 202 44.1
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 1.9e-28 130.2 203 40.9
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 3.2e-28 129.4 208 42.3
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 2.1e-27 126.7 202 41.1
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.1e-27 126.7 203 42.4
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.1e-27 126.7 203 43.3
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 2.1e-27 126.7 202 42.1
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 2.7e-27 126.3 201 42.8
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 6.0e-27 125.2 201 40.8
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 7.9e-27 124.8 207 40.6
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 1.0e-26 124.4 210 40.0
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 1.8e-26 123.6 214 42.5
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 2.3e-26 123.2 202 40.1
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 3.0e-26 122.9 202 40.6
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 3.0e-26 122.9 210 39.5
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 3.9e-26 122.5 201 40.3
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 5.1e-26 122.1 202 42.6
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.7e-26 121.3 206 39.8
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-25 120.9 206 40.8
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-25 120.6 206 40.8
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.5e-25 120.6 155 45.8
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.9e-25 120.2 206 40.3
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 1.9e-25 120.2 203 41.9
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.5e-25 119.8 200 41.0
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 3.3e-25 119.4 206 39.8
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.3e-24 117.5 206 40.3
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 2.1e-24 116.7 204 41.2
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.1e-24 116.7 206 39.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-24 116.3 206 39.8
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.8e-24 116.3 206 39.8
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 3.7e-24 115.9 208 41.3
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 8.1e-24 114.8 203 37.9
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.8e-23 113.6 214 38.8
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 1.8e-23 113.6 214 38.8
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 2.4e-23 113.2 201 40.8
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 3.1e-23 112.8 205 37.1
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 4.0e-23 112.5 196 41.3
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 4.0e-23 112.5 149 44.3
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 4.0e-23 112.5 206 39.8
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 6.9e-23 111.7 179 41.3
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 1.5e-22 110.5 213 40.8
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 2.0e-22 110.2 197 38.6
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.0e-22 110.2 206 38.3
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.6e-22 109.8 206 38.3
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 7.6e-22 108.2 199 37.7
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 7.6e-22 108.2 93 64.5
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.0e-21 107.8 207 39.6
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 1.3e-21 107.5 205 40.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 1.3e-21 107.5 205 40.0
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 4.9e-21 105.5 211 39.3
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 6.5e-21 105.1 217 39.2
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 6.5e-21 105.1 204 36.8
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 1.9e-20 103.6 200 37.5
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.5e-20 103.2 198 36.4
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 4.2e-20 102.4 149 41.6
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 5.5e-20 102.1 209 37.3
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 9.3e-20 101.3 208 37.5
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 2.1e-19 100.1 183 37.2
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 2.7e-19 99.8 205 35.1
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-19 98.2 204 35.3
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-18 97.4 204 36.8
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-18 97.4 204 36.8
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 1.3e-18 97.4 174 37.9
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.8e-18 97.1 203 35.5
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.8e-18 97.1 200 39.0
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.9e-18 95.9 186 32.3
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 6.7e-18 95.1 209 33.5
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 8.7e-18 94.7 153 41.8
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 8.7e-18 94.7 157 39.5
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.5e-17 94.0 207 39.1
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.9e-17 93.6 202 38.1
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 2.5e-17 93.2 95 48.4
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-17 93.2 205 31.7
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 2.5e-17 93.2 95 48.4
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.5e-17 93.2 205 32.7
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 3.3e-17 92.8 82 54.9
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 3.3e-17 92.8 203 34.5
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 5.7e-17 92.0 95 48.4
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 5.7e-17 92.0 160 37.5
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 7.4e-17 91.7 208 33.7
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 9.6e-17 91.3 204 33.8
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 9.6e-17 91.3 200 31.0
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 9.6e-17 91.3 84 61.9
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 9.6e-17 91.3 180 37.2
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.3e-16 90.9 209 33.5
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 2.1e-16 90.1 211 33.6
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-16 89.4 155 38.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.7e-16 89.4 155 38.7
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 3.7e-16 89.4 199 39.2
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 4.8e-16 89.0 215 34.9
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.1e-15 87.8 212 36.8
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 1.4e-15 87.4 209 33.5
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 1.8e-15 87.0 205 34.6
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 4.0e-15 85.9 197 33.5
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 4.0e-15 85.9 197 33.5
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 6.9e-15 85.1 205 33.2
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 1.2e-14 84.3 202 36.1
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 2.6e-14 83.2 89 49.4
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-14 82.8 194 33.0
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 4.5e-14 82.4 187 36.9
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 4.5e-14 82.4 204 33.3
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 5.8e-14 82.0 105 45.7
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 5.8e-14 82.0 105 45.7
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-13 80.5 88 47.7
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-13 80.1 191 32.5
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 3.8e-13 79.3 189 29.6
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 5.0e-13 79.0 218 33.9
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 5.0e-13 79.0 155 34.8
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 8.4e-13 78.2 107 40.2
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 1.9e-12 77.0 213 32.4
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 9.3e-12 74.7 204 32.4
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 9.3e-12 74.7 204 32.4
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 9.3e-12 74.7 204 32.4
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-11 73.9 57 59.6
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.6e-11 73.9 57 59.6
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 3.3e-09 66.2 86 41.9
BcaB06g28092 Brassica carinata HOM05D000001 ORTHO05D004044 3.3e-09 66.2 181 34.8
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-09 65.5 104 36.5
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 5.7e-09 65.5 104 36.5
A04p20320 Brassica napus HOM05D000001 ORTHO05D004044 9.7e-09 64.7 174 29.9
BraA04t17611Z Brassica rapa HOM05D000001 ORTHO05D004044 2.2e-08 63.5 174 29.9
C04p56020 Brassica napus HOM05D000001 ORTHO05D004044 2.8e-08 63.2 169 29.6
BolC4t27135H Brassica oleracea HOM05D000001 ORTHO05D004044 2.8e-08 63.2 169 29.6
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 2.8e-08 63.2 207 30.4
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 2.8e-08 63.2 161 31.7
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 3.7e-08 62.8 181 29.8
BcaC02g08289 Brassica carinata HOM05D000001 ORTHO05D004044 4.8e-08 62.4 169 29.6
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 6.3e-08 62.0 155 32.9
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-07 60.5 155 30.3
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 1.8e-07 60.5 155 30.3
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 3.1e-07 59.7 155 29.7
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 9.0e-07 58.2 155 31.6
Actinidia15710 Actinidia chinensis HOM05D004036 ORTHO05D004576 2.6e-06 56.6 116 35.3
Oeu003966.1 Olea europaea HOM05D000001 ORTHO05D004044 5.9e-06 55.5 83 39.8
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 5.9e-06 55.5 78 43.6
HanXRQChr03g0067161 Helianthus annuus HOM05D000001 ORTHO05D004044 7.7e-06 55.1 214 25.2
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 7.7e-06 55.1 78 43.6
Lalb_Chr14g0375461 Lupinus albus HOM05D000001 ORTHO05D004044 1.0e-05 54.7 211 27.5


User provided reference genes

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