Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR624G0013 Trochodendron aralioides HOM05D004107 ORTHO05D004738 2.7e-109 398.7 199 100.0
TAR629G1093 Trochodendron aralioides HOM05D004107 ORTHO05D004738 9.8e-35 151.0 221 44.8
arahy.Tifrunner.gnm1.ann1.1W8BNJ Arachis hypogaea HOM05D004107 ORTHO05D004738 8.3e-34 147.9 220 42.7
arahy.Tifrunner.gnm1.ann1.G9MXMR Arachis hypogaea HOM05D004107 ORTHO05D004738 8.3e-34 147.9 220 42.7
GSVIVG01012742001 Vitis vinifera HOM05D004107 ORTHO05D004738 8.3e-34 147.9 220 43.6
Gohir.D05G172700 Gossypium hirsutum HOM05D004107 ORTHO05D004738 1.1e-33 147.5 220 43.6
CiPaw.04G022400 Carya illinoinensis HOM05D004107 ORTHO05D004738 3.1e-33 146.0 220 43.2
Gohir.A05G169500 Gossypium hirsutum HOM05D004107 ORTHO05D004738 3.1e-33 146.0 220 43.2
Gorai.009G177900 Gossypium raimondii HOM05D004107 ORTHO05D004738 3.1e-33 146.0 220 43.2
PGR042G1667 Punica granatum HOM05D004107 ORTHO05D004738 3.1e-33 146.0 220 43.2
Cpa.g.sc198.44 Carica papaya HOM05D004107 ORTHO05D004738 4.1e-33 145.6 227 42.3
Ca_09479_v3 Cicer arietinum L. HOM05D004107 ORTHO05D004738 4.1e-33 145.6 83 84.3
Dinv13883 Davidia involucrata HOM05D004107 ORTHO05D004738 4.1e-33 145.6 83 84.3
Lalb_Chr23g0269471 Lupinus albus HOM05D004107 ORTHO05D004738 4.1e-33 145.6 83 84.3
Atru.chr10.2206 Acer truncatum HOM05D004107 ORTHO05D004738 5.4e-33 145.2 220 42.7
CsaV3_1G010840 Cucumis sativus L. HOM05D004107 ORTHO05D004738 7.0e-33 144.8 220 41.8
Actinidia11849 Actinidia chinensis HOM05D004107 ORTHO05D004738 9.1e-33 144.4 220 42.3
Duzib192G0236 Durio zibethinus HOM05D004107 ORTHO05D004738 9.1e-33 144.4 83 84.3
Thecc.06G087700 Theobroma cacao HOM05D004107 ORTHO05D004738 9.1e-33 144.4 220 42.7
Haze_14623 Corylus avellana HOM05D004107 ORTHO05D004738 1.2e-32 144.1 83 84.3
Potri.004G016900 Populus trichocarpa HOM05D004107 ORTHO05D004738 1.2e-32 144.1 220 42.7
Cfa007474 Carpinus fangiana HOM05D004107 ORTHO05D004738 1.6e-32 143.7 83 84.3
Lalb_Chr11g0064371 Lupinus albus HOM05D004107 ORTHO05D004738 1.6e-32 143.7 83 84.3
Thecc.06G219000 Theobroma cacao HOM05D004107 ORTHO05D004738 1.6e-32 143.7 227 41.9
AUR62021968 Chenopodium quinoa HOM05D004107 ORTHO05D004738 2.0e-32 143.3 220 42.3
ClCG03G004800 Citrullus lanatus HOM05D004107 ORTHO05D004738 2.0e-32 143.3 83 81.9
COL.COLO4_31757 Corchorus olitorius HOM05D004107 ORTHO05D004738 2.0e-32 143.3 83 83.1
Eucgr.E04076 Eucalyptus grandis HOM05D004107 ORTHO05D004738 2.0e-32 143.3 83 83.1
Medtr8g019500 Medicago truncatula HOM05D004107 ORTHO05D004738 2.0e-32 143.3 220 42.3
TPR.G39070 Trifolium pratense HOM05D004107 ORTHO05D004738 2.0e-32 143.3 220 42.3
TWI63G0549 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 2.0e-32 143.3 83 84.3
CiPaw.03G033800 Carya illinoinensis HOM05D004107 ORTHO05D004738 2.7e-32 142.9 83 81.9
Glyma.13G163700 Glycine max HOM05D004107 ORTHO05D004738 2.7e-32 142.9 83 83.1
QL02p078433 Quercus lobata HOM05D004107 ORTHO05D004738 2.7e-32 142.9 220 41.8
Sed0003265 Sechium edule HOM05D004107 ORTHO05D004738 2.7e-32 142.9 220 41.4
Sed0011656 Sechium edule HOM05D004107 ORTHO05D004738 2.7e-32 142.9 83 81.9
TWI38G1857 Tripterygium wilfordii HOM05D004107 ORTHO05D004738 2.7e-32 142.9 220 42.7
MELO3C002463.2 Cucumis melo HOM05D004107 ORTHO05D004738 3.5e-32 142.5 220 41.4
Hma1.2p1_0558F.1_g178480 Hydrangea macrophylla HOM05D004107 ORTHO05D004738 3.5e-32 142.5 220 42.3
Manes.16G008200 Manihot esculenta HOM05D004107 ORTHO05D004738 3.5e-32 142.5 220 42.3
Ciclev10014785m.g Citrus clementina HOM05D004107 ORTHO05D004738 4.5e-32 142.1 220 42.3
Psat3g165680 Pisum sativum HOM05D004107 ORTHO05D004738 4.5e-32 142.1 220 42.3
Glyma.17G107200 Glycine max HOM05D004107 ORTHO05D004738 5.9e-32 141.7 83 81.9
Medtr7g030030 Medicago truncatula HOM05D004107 ORTHO05D004738 5.9e-32 141.7 220 41.8
Medtr7g038720 Medicago truncatula HOM05D004107 ORTHO05D004738 5.9e-32 141.7 220 41.8
Phvul.003G172700 Phaseolus vulgaris HOM05D004107 ORTHO05D004738 5.9e-32 141.7 83 81.9
VMungo1215G1910 Vigna mungo HOM05D000103 ORTHO05D000049 5.9e-32 141.7 83 81.9
CANSAT56G3413 Cannabis sativa HOM05D004107 ORTHO05D004738 7.7e-32 141.4 220 42.3
DCAR_008142 Daucus carota HOM05D004107 ORTHO05D004738 1.0e-31 141.0 83 81.9
CSS0040304 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 1.3e-31 140.6 83 79.5
AUR62012688 Chenopodium quinoa HOM05D004107 ORTHO05D004738 1.3e-31 140.6 220 41.8
MD05G1344000 Malus domestica HOM05D004107 ORTHO05D004738 1.3e-31 140.6 83 80.7
vmacro10117 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 1.3e-31 140.6 83 79.5
Hund21401 Selenicereus undatus HOM05D004107 ORTHO05D004738 1.7e-31 140.2 220 41.4
VMungo0251G0494 Vigna mungo HOM05D004107 ORTHO05D004738 1.7e-31 140.2 83 80.7
RcHm_v2.0_Chr5g0003451 Rosa chinensis HOM05D004107 ORTHO05D004738 2.2e-31 139.8 220 41.8
THA.LOC104813092 Tarenaya hassleriana HOM05D004107 ORTHO05D004738 2.2e-31 139.8 220 41.4
Prupe.4G022500 Prunus persica HOM05D004107 ORTHO05D004738 2.9e-31 139.4 83 79.5
Rhsim02G0109900 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.9e-31 139.4 83 78.3
Ah.07g208390 Amaranthus hybridus HOM05D004107 ORTHO05D004738 3.8e-31 139.0 220 41.4
Lj5g0005763 Lotus japonicus HOM05D004107 ORTHO05D004738 3.8e-31 139.0 220 40.9
Nitab4.5_0003254g0100 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.0e-31 138.7 227 41.0
Nitab4.5_0006137g0030 Nicotiana tabacum HOM05D004107 ORTHO05D004738 5.0e-31 138.7 227 41.0
ECA248G0760 Erigeron canadensis HOM05D004107 ORTHO05D004738 8.5e-31 137.9 83 78.3
HanXRQChr01g0004241 Helianthus annuus HOM05D004107 ORTHO05D004738 8.5e-31 137.9 83 78.3
EL10Ac3g05771 Beta vulgaris HOM05D004107 ORTHO05D004738 1.1e-30 137.5 220 40.5
FvH4_3g02300 Fragaria vesca HOM05D004107 ORTHO05D004738 1.1e-30 137.5 220 41.4
FAN25G2291 Fragaria x ananassa HOM05D004107 ORTHO05D004738 1.1e-30 137.5 220 41.4
Oeu033892.1 Olea europaea HOM05D004107 ORTHO05D004738 1.1e-30 137.5 83 79.5
CAN.G569.15 Capsicum annuum HOM05D004107 ORTHO05D004738 1.5e-30 137.1 227 40.5
MSTRG.7222 Avicennia marina HOM05D004107 ORTHO05D004738 1.9e-30 136.7 83 78.3
CARHR107510 Cardamine hirsuta HOM05D004107 ORTHO05D004738 1.9e-30 136.7 221 39.8
Lsat_1_v5_gn_1_128700 Lactuca sativa HOM05D004107 ORTHO05D004738 1.9e-30 136.7 83 77.1
PGSC0003DMG400016484 Solanum tuberosum HOM05D004107 ORTHO05D004738 1.9e-30 136.7 227 40.5
unitig_748.g7575 Utricularia gibba HOM05D004107 ORTHO05D004738 1.9e-30 136.7 83 78.3
VMungo1215G1998 Vigna mungo HOM05D004107 ORTHO05D004738 1.9e-30 136.7 220 40.9
Oeu002728.1 Olea europaea HOM05D004107 ORTHO05D004738 2.5e-30 136.3 83 78.3
Peaxi162Scf00079g01510 Petunia axillaris HOM05D004107 ORTHO05D004738 2.5e-30 136.3 227 40.5
Peaxi162Scf00853g00314 Petunia axillaris HOM05D004107 ORTHO05D004738 2.5e-30 136.3 227 40.5
Solyc02g080440.3 Solanum lycopersicum HOM05D004107 ORTHO05D004738 2.5e-30 136.3 227 40.5
Sopen02g025130 Solanum pennellii HOM05D004107 ORTHO05D004738 2.5e-30 136.3 227 40.5
Migut.M01308 Erythranthe guttata HOM05D004107 ORTHO05D004738 5.5e-30 135.2 83 77.1
Nitab4.5_0003343g0020 Nicotiana tabacum HOM05D004107 ORTHO05D004738 7.2e-30 134.8 83 78.3
Nitab4.5_0009691g0010 Nicotiana tabacum HOM05D004107 ORTHO05D004738 7.2e-30 134.8 83 78.3
Sc05g0009110 Simmondsia chinensis HOM05D004107 ORTHO05D004738 7.2e-30 134.8 83 78.3
Solyc03g031700.4 Solanum lycopersicum HOM05D004107 ORTHO05D004738 7.2e-30 134.8 227 40.1
Sopen03g005570 Solanum pennellii HOM05D004107 ORTHO05D004738 7.2e-30 134.8 227 40.1
Cc01_g06630 Coffea canephora HOM05D004107 ORTHO05D004738 9.5e-30 134.4 83 77.1
SalBow8G0975 Salvia bowleyana HOM05D004107 ORTHO05D004738 1.2e-29 134.0 83 77.1
BcaB01g01836 Brassica carinata HOM05D004107 ORTHO05D004738 1.6e-29 133.7 222 40.1
Aa31LG9G9700 Aethionema arabicum HOM05D004107 ORTHO05D004738 2.1e-29 133.3 220 40.0
MBI02_g22110_MAGBIO Magnolia biondii HOM05D004107 ORTHO05D004738 2.1e-29 133.3 220 40.5
SHI00520 Sapria himalayana HOM05D004107 ORTHO05D004738 2.8e-29 132.9 146 52.1
PGSC0003DMG400005080 Solanum tuberosum HOM05D004107 ORTHO05D004738 2.8e-29 132.9 83 77.1
CARHR252770 Cardamine hirsuta HOM05D004107 ORTHO05D004738 3.6e-29 132.5 220 39.5
HanXRQChr11g0323581 Helianthus annuus HOM05D004107 ORTHO05D004738 3.6e-29 132.5 83 75.9
Lj1A1229G40 Lonicera japonica HOM05D004107 ORTHO05D004738 3.6e-29 132.5 83 73.5
AL6G48260 Arabidopsis lyrata HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
BcaC04g21323 Brassica carinata HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
C09p33150 Brassica napus HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
BolC9t56149H Brassica oleracea HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
Thhalv10028516m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
Sp6g04170 Schrenkiella parvula HOM05D004107 ORTHO05D004738 4.7e-29 132.1 220 39.5
A09p26110 Brassica napus HOM05D004107 ORTHO05D004738 6.1e-29 131.7 220 39.5
BraA09t38178Z Brassica rapa HOM05D004107 ORTHO05D004738 6.1e-29 131.7 220 39.5
ATR0772G029 Amborella trichopoda HOM05D004107 ORTHO05D004738 8.0e-29 131.3 235 38.7
MSTRG.15982 Avicennia marina HOM05D004107 ORTHO05D004738 8.0e-29 131.3 83 75.9
Aqoxy1G02185 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.0e-28 131.0 83 74.7
Carub.0006s3269 Capsella rubella HOM05D004107 ORTHO05D004738 1.4e-28 130.6 83 73.5
RcHm_v2.0_Chr5g0003431 Rosa chinensis HOM05D004107 ORTHO05D004738 1.4e-28 130.6 135 57.0
CDE07G0300 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 1.8e-28 130.2 235 39.6
AT4G04770 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 2.3e-28 129.8 220 39.1
CDE06G1524 Ceratophyllum demersum HOM05D004107 ORTHO05D004738 2.3e-28 129.8 235 39.6
Psat0s2739g0120 Pisum sativum HOM05D004107 ORTHO05D004738 2.3e-28 129.8 133 51.9
TAR627G0615 Trochodendron aralioides HOM05D004107 ORTHO05D004738 8.8e-28 127.9 203 42.4
Sabra04G0009200 Salix brachista HOM05D004107 ORTHO05D004738 1.5e-27 127.1 253 37.2
AT5G44316 Arabidopsis thaliana HOM05D004107 ORTHO05D004738 2.0e-27 126.7 79 73.4
SEGI_39818 Sequoiadendron giganteum HOM05D004107 ORTHO05D004738 2.6e-27 126.3 235 38.3
Cre15.g643600 Chlamydomonas reinhardtii HOM05D004107 ORTHO05D004738 5.7e-27 125.2 83 73.5
AagrBONN_evm.TU.Sc2ySwM_344.3731 Anthoceros agrestis HOM05D004107 ORTHO05D004738 1.3e-26 124.0 220 37.7
Mapoly0043s0049 Marchantia polymorpha HOM05D004107 ORTHO05D004738 1.7e-26 123.6 83 72.3
Duzib211G0221 Durio zibethinus HOM05D004107 ORTHO05D004738 2.8e-26 122.9 83 71.1
Pp3c1_9330 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.1e-25 119.0 83 69.9
Pp3c2_37190 Physcomitrium patens HOM05D004107 ORTHO05D004738 4.1e-25 119.0 83 69.9
CBR_g37549 Chara braunii HOM05D004107 ORTHO05D004738 9.2e-25 117.9 83 68.7
Hund23481 Selenicereus undatus HOM05D004107 ORTHO05D004738 9.2e-25 117.9 83 72.3
Os01g0830000 Oryza sativa ssp. japonica HOM05D004107 ORTHO05D004738 1.6e-24 117.1 110 58.2
MCO07G339 Micromonas commoda HOM05D004107 ORTHO05D004738 3.5e-24 115.9 220 37.3
Rhsim04G0103400 Rhododendron simsii HOM05D004107 ORTHO05D004738 4.5e-24 115.5 237 35.9
SMO118G0281 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 5.9e-24 115.2 112 55.4
PRCOL_00000395 Prasinoderma coloniale HOM05D004107 ORTHO05D004738 2.9e-23 112.8 112 53.6
Aqoxy1G02187 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 8.6e-23 111.3 83 57.8
PSO541G4368 Papaver somniferum HOM05D004107 ORTHO05D004738 8.6e-23 111.3 83 61.4
PSO675G6282 Papaver somniferum HOM05D004107 ORTHO05D004738 8.6e-23 111.3 83 61.4
EL10Ac8g18634 Beta vulgaris HOM05D004107 ORTHO05D004738 1.2e-21 107.5 80 61.2
Psat0s2739g0040 Pisum sativum HOM05D004107 ORTHO05D004738 6.8e-20 101.7 66 69.7
Rhsim02G0109300 Rhododendron simsii HOM05D004107 ORTHO05D004738 2.0e-19 100.1 174 37.4
BcaB05g23711 Brassica carinata HOM05D004107 ORTHO05D004738 5.7e-19 98.6 127 48.8
HPP92_023742 Vanilla planifolia HOM05D004107 ORTHO05D004738 2.4e-17 93.2 221 33.9
Actinidia04354 Actinidia chinensis HOM05D004107 ORTHO05D004738 5.4e-17 92.0 65 66.2
Haze_26807 Corylus avellana HOM05D004107 ORTHO05D004738 9.2e-17 91.3 79 54.4
SMO347G0487 Selaginella moellendorffii HOM05D004107 ORTHO05D004738 1.6e-16 90.5 83 48.2
VMungo1383G1914 Vigna mungo HOM05D004107 ORTHO05D004738 2.7e-16 89.7 96 55.2
Atru.chr8.686 Acer truncatum HOM05D004107 ORTHO05D004738 5.0e-15 85.5 56 69.6
RcHm_v2.0_Chr5g0003481 Rosa chinensis HOM05D004107 ORTHO05D004738 1.1e-14 84.3 52 75.0
vmacro15813 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 7.3e-14 81.6 50 74.0
PSO339G3293 Papaver somniferum HOM05D004107 ORTHO05D004738 9.5e-14 81.3 217 30.4
RcHm_v2.0_Chr1g0332851 Rosa chinensis HOM05D004107 ORTHO05D004738 4.7e-13 79.0 53 71.7
RcHm_v2.0_Chr6g0297111 Rosa chinensis HOM05D004107 ORTHO05D004738 4.7e-13 79.0 53 71.7
CSS0008972 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 8.0e-13 78.2 50 70.0
Nn004s41401 Nelumbo nucifera HOM05D000561 ORTHO05D000514 1.4e-12 77.4 51 68.6
C02p40090 Brassica napus HOM05D004107 ORTHO05D004738 1.8e-12 77.0 170 32.9
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 3.1e-12 76.3 118 30.5
BolC2t10037H Brassica oleracea HOM05D004107 ORTHO05D004738 3.1e-12 76.3 170 32.9
Pp3c25_3020 Physcomitrium patens HOM05D004107 ORTHO05D004738 2.6e-11 73.2 113 34.5
vmacro09067 Vaccinium macrocarpon HOM05D004107 ORTHO05D004738 3.7e-10 69.3 50 64.0
Thhalv10022515m.g Eutrema salsugineum HOM05D004107 ORTHO05D004738 1.1e-09 67.8 175 31.4
CSS0041721 Camellia sinensis var. sinensis HOM05D004107 ORTHO05D004738 2.0e-08 63.5 33 87.9
RcHm_v2.0_Chr5g0003411 Rosa chinensis HOM05D004107 ORTHO05D004738 1.0e-07 61.2 41 65.9
FAN21G0289 Fragaria x ananassa HOM05D004107 ORTHO05D004738 1.3e-07 60.8 171 31.0
BraA02t07514Z Brassica rapa HOM05D004107 ORTHO05D004738 1.9e-06 57.0 57 40.4
A02p25270 Brassica napus HOM05D004107 ORTHO05D004738 4.3e-06 55.8 51 51.0


User provided reference genes

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