Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 6.7e-76 287.7 199 100.0
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 1.7e-50 203.4 197 76.1
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 3.6e-45 185.7 202 71.3
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 4.7e-45 185.3 200 67.5
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 4.7e-45 185.3 199 71.9
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 6.1e-45 184.9 201 72.1
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 8.0e-45 184.5 202 67.3
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 1.4e-44 183.7 198 73.7
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.8e-44 183.3 201 70.6
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 4.0e-44 182.2 201 68.7
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 5.2e-44 181.8 201 70.6
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 6.7e-44 181.4 202 66.8
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 2.0e-43 179.9 201 68.7
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 5.7e-43 178.3 202 69.8
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 1.3e-42 177.2 201 69.7
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.2e-42 176.4 198 72.7
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 2.2e-42 176.4 198 72.7
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 2.8e-42 176.0 199 70.4
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 4.8e-42 175.3 200 65.0
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 8.2e-42 174.5 202 68.8
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 1.1e-41 174.1 201 68.2
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.8e-41 173.3 201 70.1
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.8e-41 173.3 201 69.2
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 7.0e-41 171.4 201 68.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 1.2e-40 170.6 227 63.0
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.2e-40 170.6 207 63.8
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 1.2e-40 170.6 207 63.8
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 3.5e-40 169.1 199 69.3
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 3.5e-40 169.1 199 67.3
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.7e-39 166.8 199 67.3
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 1.7e-39 166.8 199 67.3
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 2.9e-39 166.0 201 65.7
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.9e-39 166.0 199 66.8
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.9e-39 166.0 196 67.3
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.0e-39 165.2 192 68.2
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 6.5e-39 164.9 195 68.7
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 6.5e-39 164.9 195 68.7
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 6.5e-39 164.9 199 66.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.1e-38 164.1 199 66.8
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 1.1e-38 164.1 197 67.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.1e-38 164.1 197 67.5
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 1.9e-38 163.3 202 67.3
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 2.5e-38 162.9 200 57.0
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 4.2e-38 162.2 201 65.7
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 5.5e-38 161.8 262 47.3
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 7.2e-38 161.4 199 66.8
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.2e-38 161.4 199 66.8
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 7.2e-38 161.4 200 66.0
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.2e-37 160.6 201 65.7
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 2.1e-37 159.8 220 63.6
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 2.1e-37 159.8 203 64.5
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 3.6e-37 159.1 179 73.2
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 3.6e-37 159.1 202 66.3
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 3.6e-37 159.1 200 65.5
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 4.7e-37 158.7 195 65.6
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 4.7e-37 158.7 200 66.0
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 1.0e-36 157.5 203 66.5
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 1.8e-36 156.8 202 68.8
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 4.0e-36 155.6 210 64.8
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 5.2e-36 155.2 199 66.3
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.2e-36 155.2 199 65.3
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.2e-36 155.2 198 65.2
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.5e-35 153.7 199 65.3
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 1.5e-35 153.7 201 65.7
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 1.5e-35 153.7 199 65.3
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.5e-35 153.7 193 65.8
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 3.4e-35 152.5 199 64.3
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 3.4e-35 152.5 167 74.3
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 5.7e-35 151.8 202 64.9
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 5.7e-35 151.8 195 63.1
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.7e-35 151.8 199 65.3
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 7.5e-35 151.4 195 64.1
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 9.8e-35 151.0 197 65.0
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 1.3e-34 150.6 201 63.7
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.3e-34 150.6 200 65.0
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.3e-34 150.6 197 64.0
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 1.7e-34 150.2 201 44.3
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.2e-34 149.8 201 44.3
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.2e-34 149.8 190 52.6
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.8e-34 149.4 201 65.7
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 2.8e-34 149.4 195 65.1
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 1.1e-33 147.5 141 66.7
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 3.1e-33 146.0 199 43.7
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 3.1e-33 146.0 199 43.7
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 3.1e-33 146.0 200 62.5
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 4.1e-33 145.6 195 63.1
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 5.4e-33 145.2 193 62.7
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 9.1e-33 144.4 204 61.8
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 1.2e-32 144.1 202 56.9
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.0e-32 143.3 191 55.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.0e-32 143.3 198 53.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 4.5e-32 142.1 189 42.9
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 5.9e-32 141.7 204 55.4
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 5.9e-32 141.7 203 48.3
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-31 141.0 200 58.0
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.0e-31 141.0 202 61.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 1.3e-31 140.6 189 65.1
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.7e-31 140.2 195 62.1
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 1.7e-31 140.2 204 60.8
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.0e-31 138.7 195 61.5
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 5.0e-31 138.7 177 67.8
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 6.5e-31 138.3 204 55.4
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 8.5e-31 137.9 200 63.5
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 1.5e-30 137.1 202 63.4
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 1.9e-30 136.7 203 54.2
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 9.5e-30 134.4 169 68.0
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 9.5e-30 134.4 203 61.6
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-28 131.0 200 54.0
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 2.3e-28 129.8 180 49.4
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 8.8e-28 127.9 201 49.8
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 1.2e-27 127.5 162 67.9
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 2.0e-27 126.7 203 54.2
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 9.2e-25 117.9 205 50.7
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.7e-24 116.3 143 73.4
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.7e-24 116.3 208 50.5
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 3.3e-22 109.4 194 56.2
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 4.3e-22 109.0 202 35.1
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.8e-21 106.3 195 44.1
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 3.6e-21 105.9 198 53.0
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 3.6e-21 105.9 198 53.0
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-20 104.4 164 55.5
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.0e-20 104.4 164 55.5
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.0e-20 104.4 164 55.5
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.0e-20 104.4 164 55.5
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.9e-18 96.3 181 44.2
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 4.9e-18 95.5 138 51.4
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 3.2e-17 92.8 202 34.2
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 3.2e-17 92.8 202 34.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 4.1e-17 92.4 202 34.2
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 7.0e-17 91.7 202 34.2
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.7e-16 89.7 149 64.4
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 3.5e-16 89.4 140 47.9
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.6e-16 89.0 140 67.9
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 2.5e-14 83.2 141 60.3
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 2.5e-14 83.2 96 49.0
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.6e-13 80.5 182 49.5
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 3.1e-12 76.3 194 40.2
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 8.9e-12 74.7 189 50.3
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.2e-11 74.3 141 48.9
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 1.3e-10 70.9 79 48.1
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 4.9e-10 68.9 39 74.4
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.9e-09 67.0 167 29.9
Lj3C990T8 Lonicera japonica HOM05D005036 ORTHO05D005881 1.2e-08 64.3 57 61.4
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 2.0e-08 63.5 117 53.0
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.0e-07 58.9 111 54.1


User provided reference genes

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