Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 0.0e+00 1459.9 770 100.0
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1130.9 758 79.3
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1127.5 757 78.3
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1083.6 758 76.5
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 0.0e+00 1080.5 778 74.7
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1080.1 757 75.7
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 757 75.4
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 757 74.9
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 4.7e-311 1070.8 756 75.1
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.6e-309 1065.1 757 74.4
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 2.9e-308 1061.6 757 75.0
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 3.7e-308 1061.2 757 74.4
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 4.9e-308 1060.8 793 72.5
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.1e-307 1059.7 758 74.7
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 1.1e-307 1059.7 757 74.2
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 7.0e-307 1057.0 758 74.1
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.6e-306 1054.3 757 74.2
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 8.6e-305 1050.0 757 73.7
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.1e-304 1049.7 764 73.6
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 5.6e-304 1047.3 757 73.4
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 9.5e-304 1046.6 757 74.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 2.8e-303 1045.0 758 74.5
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 3.6e-303 1044.6 759 74.2
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 5.8e-301 1037.3 757 72.9
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 9.8e-301 1036.6 757 72.9
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.2e-300 1035.4 757 73.1
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 7.0e-299 1030.4 757 72.7
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 2.7e-298 1028.5 757 73.2
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.0e-298 1027.3 760 72.1
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.3e-297 1026.2 756 71.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 1.1e-296 1023.1 759 73.1
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.6e-295 1019.2 755 71.5
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.8e-294 1015.8 757 72.5
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 8.9e-294 1013.4 757 71.1
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.5e-293 1012.7 755 72.5
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 2.4e-291 1005.4 761 70.8
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 7.1e-291 1003.8 780 69.5
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 1.6e-290 1002.7 757 70.7
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 2.7e-290 1001.9 756 71.0
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 3.5e-290 1001.5 757 70.3
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 2.3e-289 998.8 757 70.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 5.1e-289 997.7 758 70.3
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 5.1e-289 997.7 757 70.3
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 1.1e-288 996.5 757 70.5
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.1e-288 996.5 782 69.4
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 9.5e-288 993.4 757 69.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 2.1e-287 992.3 757 70.5
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 4.7e-287 991.1 760 71.2
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 1.8e-286 989.2 756 70.6
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 7.6e-285 983.8 756 69.0
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 3.2e-283 978.4 757 68.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 5.4e-283 977.6 693 75.5
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 5.4e-283 977.6 758 70.8
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 7.1e-283 977.2 756 68.7
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 1.2e-282 976.5 765 69.2
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 1.6e-282 976.1 757 68.3
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.6e-282 976.1 756 69.0
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 2.1e-282 975.7 756 69.2
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 7.8e-282 973.8 757 70.3
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 4.0e-278 961.4 757 67.4
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 4.0e-278 961.4 757 67.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 2.6e-277 958.7 758 68.3
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 1.7e-276 956.1 759 68.4
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 1.1e-275 953.4 784 66.7
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 5.1e-273 944.5 769 67.8
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 7.3e-272 940.6 757 67.6
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 8.1e-271 937.2 757 66.6
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.2e-266 923.3 757 66.3
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.6e-263 912.9 851 59.9
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.8e-263 911.4 754 64.6
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-262 910.2 795 63.3
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 9.0e-262 907.1 690 70.0
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 2.2e-260 902.5 754 65.4
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 6.4e-260 901.0 768 64.7
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 6.4e-260 901.0 754 63.5
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 8.4e-260 900.6 754 64.2
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 8.4e-260 900.6 754 63.9
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 9.3e-259 897.1 754 63.1
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 3.5e-258 895.2 754 63.3
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.3e-257 892.5 754 63.3
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 6.7e-257 891.0 754 63.0
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 1.6e-255 886.3 754 63.3
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.1e-255 885.9 755 62.0
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 3.7e-255 885.2 754 63.1
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 6.2e-255 884.4 757 62.9
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 4.5e-253 878.2 757 63.0
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.9e-252 875.5 759 60.7
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 1.3e-249 866.7 770 61.7
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 3.3e-248 862.1 797 60.0
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.6e-234 816.6 674 66.3
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 2.2e-231 806.2 805 56.1
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 1.7e-223 780.0 754 58.6
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.9e-219 766.5 758 56.7
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.7e-213 746.1 536 74.8
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 4.5e-213 745.3 603 66.8
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 7.7e-205 718.0 761 56.6
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 3.2e-174 616.3 773 46.3
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 5.8e-168 595.5 558 60.4
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 4.6e-165 585.9 759 45.5
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 9.0e-161 571.6 778 44.5
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 9.3e-150 535.0 377 71.9
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.3e-148 530.4 782 41.3
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 1.9e-147 527.3 800 40.9
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 9.0e-137 491.9 324 77.2
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.5e-134 483.8 345 76.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.1e-133 480.7 775 39.5
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 2.5e-126 457.2 436 60.6
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.2e-125 454.9 479 54.3
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.3e-113 412.9 268 78.0
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 2.4e-105 387.5 275 68.0
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.7e-103 381.3 277 70.4
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.4e-97 359.8 480 47.9
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.2e-65 252.7 248 55.2
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.6e-64 251.9 353 45.6
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.2e-61 242.3 810 26.8
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.4e-57 228.8 178 74.2
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 9.9e-51 206.1 221 53.8
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.8e-45 187.2 162 62.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.2e-41 174.5 220 50.5
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.1e-36 159.5 777 22.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 6.4e-34 150.2 90 80.0
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 9.6e-30 136.3 91 76.9
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 5.3e-28 130.6 140 52.9
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.5e-27 129.0 111 60.4
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.9e-25 122.1 70 92.9
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.2e-24 119.4 84 70.2
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 2.3e-23 115.2 69 79.7
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.0e-23 114.8 70 84.3
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 6.3e-21 107.1 69 73.9
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 6.3e-21 107.1 69 73.9
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 3.4e-19 101.3 86 62.8
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 2.1e-16 92.0 166 42.8
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.9e-15 87.8 61 73.8
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.8e-12 79.0 69 65.2
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.9e-10 71.6 47 76.6
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 3.8e-10 71.2 67 59.7
Aa31LG4G15080 Aethionema arabicum HOM05D005589 ORTHO05D006948 2.3e-07 62.0 230 28.3
SEGI_04683 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.9e-07 61.2 42 69.0


User provided reference genes

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