Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1587 Trochodendron aralioides HOM05D007298 ORTHO05D009226 6.6e-148 527.3 264 100.0
MBI13_g02430_MAGBIO Magnolia biondii HOM05D007298 ORTHO05D009226 3.8e-79 298.9 277 63.9
Nn2g15906 Nelumbo nucifera HOM05D007298 ORTHO05D009226 2.8e-77 292.7 302 60.3
Thecc.03G118900 Theobroma cacao HOM05D007298 ORTHO05D009226 7.8e-72 274.6 286 60.5
CiPaw.13G179900 Carya illinoinensis HOM05D007298 ORTHO05D009226 1.3e-71 273.9 275 58.9
Aqoxy2G04036 Aquilegia oxysepala HOM05D007298 ORTHO05D009226 2.3e-71 273.1 285 57.9
Nn7g35796 Nelumbo nucifera HOM05D007298 ORTHO05D009226 3.0e-71 272.7 284 59.9
Hma1.2p1_1436F.1_g283160 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 5.6e-70 268.5 273 60.1
Cfa009528 Carpinus fangiana HOM05D007298 ORTHO05D009226 5.2e-68 261.9 285 58.2
vmacro16084 Vaccinium macrocarpon HOM05D007298 ORTHO05D009226 4.4e-67 258.8 275 57.8
Duzib205G1649 Durio zibethinus HOM05D007298 ORTHO05D009226 4.9e-66 255.4 277 58.1
CSS0015764 Camellia sinensis var. sinensis HOM05D007298 ORTHO05D009226 1.1e-65 254.2 277 55.2
COL.COLO4_37432 Corchorus olitorius HOM05D007298 ORTHO05D009226 1.9e-65 253.4 289 54.0
Sabra01G0000900 Salix brachista HOM05D007298 ORTHO05D009226 1.6e-64 250.4 280 53.2
Cc11_g17470 Coffea canephora HOM05D007298 ORTHO05D009226 6.0e-64 248.4 278 52.5
Gohir.A12G186800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 1.7e-63 246.9 278 54.7
Actinidia30606 Actinidia chinensis HOM05D007298 ORTHO05D009226 5.0e-63 245.4 274 55.1
Gohir.D12G189800 Gossypium hirsutum HOM05D007298 ORTHO05D009226 5.0e-63 245.4 278 54.7
Gorai.008G203600 Gossypium raimondii HOM05D007298 ORTHO05D009226 3.3e-62 242.7 278 54.0
Rhsim12G0097800 Rhododendron simsii HOM05D007298 ORTHO05D009226 7.3e-62 241.5 260 55.0
Lj4g0005920 Lotus japonicus HOM05D007298 ORTHO05D009226 2.8e-61 239.6 284 53.2
CsaV3_1G001220 Cucumis sativus L. HOM05D007298 ORTHO05D009226 5.2e-60 235.3 277 54.5
MELO3C026268.2 Cucumis melo HOM05D007298 ORTHO05D009226 6.8e-60 235.0 277 54.5
Lalb_Chr16g0383911 Lupinus albus HOM05D007298 ORTHO05D009226 8.9e-60 234.6 282 50.7
PGR119G1464 Punica granatum HOM05D007298 ORTHO05D009226 8.9e-60 234.6 275 53.8
VMungo0251G1522 Vigna mungo HOM05D007298 ORTHO05D009226 8.9e-60 234.6 272 51.5
ClCG06G017280 Citrullus lanatus HOM05D007298 ORTHO05D009226 1.2e-59 234.2 277 54.2
Sed0017427 Sechium edule HOM05D007298 ORTHO05D009226 7.5e-59 231.5 274 53.3
Glyma.07G199400 Glycine max HOM05D007298 ORTHO05D009226 2.9e-58 229.6 290 51.0
Phvul.002G230700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 1.4e-57 227.3 274 50.7
Nitab4.5_0008442g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 1.2e-56 224.2 283 48.8
Potri.001G001000 Populus trichocarpa HOM05D007298 ORTHO05D009226 2.1e-56 223.4 269 52.0
Psat7g113280 Pisum sativum HOM05D007298 ORTHO05D009226 3.5e-56 222.6 277 50.5
Haze_22918 Corylus avellana HOM05D007298 ORTHO05D009226 1.0e-55 221.1 283 54.4
TPR.G16338 Trifolium pratense HOM05D007298 ORTHO05D009226 1.3e-55 220.7 281 50.2
Glyma.13G177000 Glycine max HOM05D007298 ORTHO05D009226 5.6e-54 215.3 290 47.6
Medtr4g088515 Medicago truncatula HOM05D000062 ORTHO05D000043 5.6e-54 215.3 280 48.9
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 7.3e-54 214.9 275 50.2
Eucgr.J01725 Eucalyptus grandis HOM05D007298 ORTHO05D009226 9.5e-54 214.5 259 53.3
QL01p007822 Quercus lobata HOM05D007298 ORTHO05D009226 1.2e-53 214.2 269 52.0
Lalb_Chr05g0218531 Lupinus albus HOM05D007298 ORTHO05D009226 2.8e-53 213.0 278 48.9
Peaxi162Scf00128g01770 Petunia axillaris HOM05D007298 ORTHO05D009226 4.0e-52 209.1 275 48.0
Lalb_Chr09g0327771 Lupinus albus HOM05D007298 ORTHO05D009226 1.5e-51 207.2 281 48.0
Sc05g0003880 Simmondsia chinensis HOM05D007298 ORTHO05D009226 2.6e-51 206.5 287 46.3
PGSC0003DMG400025413 Solanum tuberosum HOM05D007298 ORTHO05D009226 4.4e-51 205.7 270 48.9
arahy.Tifrunner.gnm1.ann1.IS7ZQD Arachis hypogaea HOM05D002349 ORTHO05D002464 9.9e-51 204.5 283 48.8
arahy.Tifrunner.gnm1.ann1.MB6W4F Arachis hypogaea HOM05D002349 ORTHO05D002464 9.9e-51 204.5 283 48.8
Dinv31519 Davidia involucrata HOM05D007298 ORTHO05D009226 9.9e-51 204.5 243 55.6
RcHm_v2.0_Chr5g0084091 Rosa chinensis HOM05D007298 ORTHO05D009226 1.7e-50 203.8 358 43.3
TWI32G0891 Tripterygium wilfordii HOM05D007298 ORTHO05D009226 1.7e-50 203.8 258 51.9
MD11G1000700 Malus domestica HOM05D007298 ORTHO05D009226 8.4e-50 201.4 286 47.9
Actinidia09612 Actinidia chinensis HOM05D007298 ORTHO05D009226 3.2e-49 199.5 276 47.8
FAN16G2589 Fragaria x ananassa HOM05D007298 ORTHO05D009226 5.4e-49 198.7 344 43.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.7e-48 196.4 260 49.6
Sopen05g018720 Solanum pennellii HOM05D007298 ORTHO05D009226 4.6e-48 195.7 259 47.9
Ciclev10017525m.g Citrus clementina HOM05D007298 ORTHO05D009226 7.8e-48 194.9 239 51.9
FvH4_3g45980 Fragaria vesca HOM05D007298 ORTHO05D009226 7.8e-48 194.9 318 45.3
Ca_18576_v3 Cicer arietinum L. HOM05D007298 ORTHO05D009226 1.3e-47 194.1 274 46.4
Migut.K01030 Erythranthe guttata HOM05D007298 ORTHO05D009226 8.6e-47 191.4 266 45.1
Prupe.6G001000 Prunus persica HOM05D007298 ORTHO05D009226 4.3e-46 189.1 278 47.8
ATR0068G085 Amborella trichopoda HOM05D007298 ORTHO05D009226 7.3e-46 188.3 344 41.6
Solyc05g024020.1 Solanum lycopersicum HOM05D007298 ORTHO05D009226 2.1e-45 186.8 256 47.7
Duzib084G1143 Durio zibethinus HOM05D007298 ORTHO05D009226 5.8e-43 178.7 207 55.1
Manes.15G111000 Manihot esculenta HOM05D007298 ORTHO05D009226 9.9e-43 177.9 260 46.5
Sed0020092 Sechium edule HOM05D007298 ORTHO05D009226 9.9e-43 177.9 232 51.3
CARHR233970 Cardamine hirsuta HOM05D007298 ORTHO05D009226 2.2e-42 176.8 291 45.4
AUR62008624 Chenopodium quinoa HOM05D007298 ORTHO05D009226 2.9e-42 176.4 251 47.0
Sp7g24320 Schrenkiella parvula HOM05D007298 ORTHO05D009226 2.9e-42 176.4 280 45.7
AT4G26415 Arabidopsis thaliana HOM05D007298 ORTHO05D009226 6.4e-42 175.3 285 43.9
EL10Ac4g07728 Beta vulgaris HOM05D007298 ORTHO05D009226 8.4e-42 174.9 260 47.3
C07p54880 Brassica napus HOM05D007298 ORTHO05D009226 8.4e-42 174.9 289 43.9
BolC7t45976H Brassica oleracea HOM05D007298 ORTHO05D009226 8.4e-42 174.9 289 43.9
FAN21G1139 Fragaria x ananassa HOM05D007298 ORTHO05D009226 1.4e-41 174.1 303 43.6
A03p56680 Brassica napus HOM05D007298 ORTHO05D009226 3.2e-41 172.9 288 43.8
BraA03t14738Z Brassica rapa HOM05D007298 ORTHO05D009226 3.2e-41 172.9 288 43.8
Carub.0007s1454 Capsella rubella HOM05D007298 ORTHO05D009226 3.2e-41 172.9 290 44.1
FAN11G2203 Fragaria x ananassa HOM05D007298 ORTHO05D009226 5.4e-41 172.2 302 43.7
Lsat_1_v5_gn_4_2201 Lactuca sativa HOM05D007298 ORTHO05D009226 7.1e-41 171.8 261 44.1
FAN25G2175 Fragaria x ananassa HOM05D007298 ORTHO05D009226 9.3e-41 171.4 329 41.9
AUR62033147 Chenopodium quinoa HOM05D007298 ORTHO05D009226 1.6e-40 170.6 247 47.8
BcaC06g32750 Brassica carinata HOM05D007298 ORTHO05D009226 2.3e-39 166.8 261 44.8
AL7G26540 Arabidopsis lyrata HOM05D007298 ORTHO05D009226 3.0e-39 166.4 266 43.2
DCAR_006996 Daucus carota HOM05D007298 ORTHO05D009226 6.6e-39 165.2 264 44.7
Ah.08g213460 Amaranthus hybridus HOM05D007298 ORTHO05D009226 1.5e-38 164.1 280 44.3
CANSAT11G1103 Cannabis sativa HOM05D007298 ORTHO05D009226 1.9e-38 163.7 232 47.8
Hma1.2p1_0459F.1_g157260 Hydrangea macrophylla HOM05D007298 ORTHO05D009226 5.6e-38 162.2 232 49.1
Thhalv10026008m.g Eutrema salsugineum HOM05D007298 ORTHO05D009226 8.1e-37 158.3 268 43.3
THA.LOC104813474 Tarenaya hassleriana HOM05D007298 ORTHO05D009226 1.1e-36 157.9 280 42.9
HanXRQChr12g0385721 Helianthus annuus HOM05D007298 ORTHO05D009226 5.3e-36 155.6 238 45.0
Cpa.g.sc119.13 Carica papaya HOM05D007298 ORTHO05D009226 1.2e-35 154.5 273 42.5
SGA_v2.0_scaffold9G04794 Striga asiatica HOM05D002076 ORTHO05D002087 3.4e-35 152.9 200 48.5
SalBow2G0405 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.2e-34 150.2 243 44.0
SalBow2G1404 Salvia bowleyana HOM05D007298 ORTHO05D009226 2.2e-34 150.2 243 44.0
DCAR_006994 Daucus carota HOM05D007298 ORTHO05D009226 4.9e-34 149.1 250 43.6
Zm00001eb127960 Zea mays HOM05D007298 ORTHO05D009226 5.4e-33 145.6 267 40.4
unitig_22.g6385 Utricularia gibba HOM05D007298 ORTHO05D009226 2.7e-32 143.3 211 44.1
BcaNung02423 Brassica carinata HOM05D007298 ORTHO05D009226 3.5e-32 142.9 280 40.4
Glyma.15G076400 Glycine max HOM05D007298 ORTHO05D009226 5.3e-28 129.0 220 42.7
Glyma.13G237100 Glycine max HOM05D007298 ORTHO05D009226 4.6e-24 115.9 130 53.1
Phvul.006G183700 Phaseolus vulgaris HOM05D007298 ORTHO05D009226 2.8e-21 106.7 189 41.3
CDE07G0295 Ceratophyllum demersum HOM05D000114 ORTHO05D000038 2.2e-18 97.1 141 41.1
Nitab4.5_0000340g0060 Nicotiana tabacum HOM05D007298 ORTHO05D009226 5.3e-12 75.9 101 44.6
BcaC01g06536 Brassica carinata HOM05D007298 ORTHO05D009226 9.7e-06 55.1 111 39.6
BcaC09g50696 Brassica carinata HOM05D007298 ORTHO05D009226 9.7e-06 55.1 95 35.8
C01p22230 Brassica napus HOM05D007298 ORTHO05D009226 9.7e-06 55.1 95 35.8
BolC1t02153H Brassica oleracea HOM05D007298 ORTHO05D009226 9.7e-06 55.1 95 35.8


User provided reference genes

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