Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.6e-144 515.4 267 100.0
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.0e-133 477.2 264 94.7
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.2e-99 367.1 265 74.0
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 2.4e-97 359.4 264 74.2
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 4.1e-97 358.6 267 68.9
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 7.1e-97 357.8 264 72.0
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 2.1e-96 356.3 267 71.2
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 2.7e-96 355.9 276 68.5
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 3.5e-96 355.5 265 70.9
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 7.8e-96 354.4 267 67.0
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-94 350.5 265 72.1
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.1e-94 350.5 264 68.2
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.5e-94 349.4 264 68.6
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 2.5e-94 349.4 264 69.3
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 9.5e-94 347.4 264 70.5
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.6e-93 346.7 266 69.2
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 1.8e-92 343.2 264 66.7
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 4.0e-92 342.0 270 67.0
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 8.9e-92 340.9 265 68.3
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 8.9e-92 340.9 266 65.8
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 2.0e-91 339.7 257 68.1
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 2.6e-91 339.3 267 66.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.6e-91 339.3 267 67.0
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 3.4e-91 339.0 269 68.8
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 4.4e-91 338.6 264 66.7
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 5.8e-91 338.2 266 68.4
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 7.6e-91 337.8 266 65.4
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 7.6e-91 337.8 261 66.3
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 9.9e-91 337.4 266 65.8
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 2.9e-90 335.9 262 65.6
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 2.9e-90 335.9 266 65.8
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 3.7e-90 335.5 262 65.3
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.4e-89 333.6 260 66.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 1.9e-89 333.2 265 64.5
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.1e-89 332.0 265 68.3
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 9.2e-89 330.9 267 64.0
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.2e-88 330.5 266 65.4
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 3.5e-88 328.9 267 65.2
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.5e-88 328.9 266 64.7
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 4.6e-88 328.6 264 65.2
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 3.9e-87 325.5 264 64.4
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 1.1e-86 323.9 267 62.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.1e-86 323.9 266 64.7
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 2.5e-86 322.8 267 62.9
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 3.3e-86 322.4 263 63.1
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 4.3e-86 322.0 267 63.3
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 5.6e-86 321.6 267 62.2
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 5.6e-86 321.6 265 64.9
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 7.3e-86 321.2 267 61.4
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 9.6e-86 320.9 268 62.7
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 3.6e-85 318.9 267 62.5
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 8.1e-85 317.8 267 63.3
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.4e-84 317.0 264 61.0
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 4.0e-84 315.5 277 61.7
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 6.8e-84 314.7 267 60.3
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 3.4e-83 312.4 267 62.9
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 4.4e-83 312.0 267 60.3
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 9.9e-83 310.8 267 61.8
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.3e-82 310.5 267 62.2
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 4.9e-82 308.5 263 58.9
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 6.4e-82 308.1 269 62.1
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 8.4e-82 307.8 269 61.7
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 5.4e-81 305.1 267 59.6
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 5.4e-81 305.1 263 58.9
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 7.1e-81 304.7 269 61.7
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 9.3e-81 304.3 267 59.2
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 1.2e-80 303.9 264 63.6
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 1.6e-80 303.5 271 59.8
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.1e-80 303.1 263 63.1
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 2.1e-80 303.1 267 59.2
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 7.8e-80 301.2 264 61.7
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 7.8e-80 301.2 266 59.0
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 7.8e-80 301.2 267 61.0
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 2.3e-79 299.7 267 58.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 5.1e-79 298.5 217 72.4
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 6.6e-79 298.1 266 60.5
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 8.7e-79 297.7 268 59.3
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 2.5e-78 296.2 266 58.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 7.3e-78 294.7 249 63.1
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.6e-77 293.5 268 58.6
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.1e-77 293.1 266 58.6
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 3.6e-77 292.4 263 58.2
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 4.8e-77 292.0 264 58.3
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 4.8e-77 292.0 264 61.0
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.1e-76 290.8 264 60.6
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 3.1e-76 289.3 264 60.6
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 9.0e-76 287.7 264 60.2
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.0e-75 286.6 224 68.3
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.6e-75 286.2 264 58.0
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 9.9e-75 284.3 266 60.2
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.9e-74 282.7 267 58.1
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 2.9e-74 282.7 264 58.7
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 1.1e-73 280.8 264 59.5
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 7.1e-73 278.1 264 56.8
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 5.1e-71 271.9 260 56.2
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.6e-69 265.8 265 54.3
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 3.1e-68 262.7 255 56.1
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 2.6e-67 259.6 265 54.7
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 1.7e-58 230.3 177 66.7
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 1.6e-56 223.8 272 46.7
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.3e-55 219.9 224 55.4
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 6.3e-53 211.8 267 44.6
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 2.0e-51 206.8 271 45.0
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 1.3e-47 194.1 282 44.7
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 4.8e-45 185.7 267 45.3
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 4.5e-43 179.1 145 60.0
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.1e-22 111.3 117 58.1
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 9.1e-20 101.7 93 62.4
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 4.5e-19 99.4 93 62.4
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.1e-16 90.5 73 69.9
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 4.0e-15 86.3 92 44.6
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 4.0e-15 86.3 81 56.8
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.5e-14 84.3 206 31.1
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 2.8e-13 80.1 161 36.6
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 2.0e-11 73.9 57 63.2
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 3.5e-11 73.2 178 32.6
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 3.8e-10 69.7 172 30.8
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 2.1e-08 63.9 90 45.6
SEGI_23631 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.6e-06 57.0 49 69.4


User provided reference genes

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