Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 5.0e-202 707.6 369 100.0
Dinv12171 Davidia involucrata HOM05D006201 ORTHO05D007178 2.7e-78 296.6 269 60.2
QL07p033902 Quercus lobata HOM05D006201 ORTHO05D007178 6.6e-77 292.0 276 56.9
Cfa017112 Carpinus fangiana HOM05D006201 ORTHO05D007178 6.8e-74 282.0 283 55.8
Haze_21088 Corylus avellana HOM05D006201 ORTHO05D007178 9.8e-73 278.1 296 55.4
MBI09_g02137_MAGBIO Magnolia biondii HOM05D006201 ORTHO05D007178 1.3e-72 277.7 281 57.7
Ciclev10024812m.g Citrus clementina HOM05D006201 ORTHO05D007178 8.3e-72 275.0 290 52.1
Lj2C67G1 Lonicera japonica HOM05D006201 ORTHO05D007178 1.6e-70 270.8 275 54.2
Prupe.6G285000 Prunus persica HOM05D006201 ORTHO05D007178 2.7e-70 270.0 286 52.4
Aqoxy1G01280 Aquilegia oxysepala HOM05D006201 ORTHO05D007178 1.0e-69 268.1 269 56.9
PSO349G0155 Papaver somniferum HOM05D006201 ORTHO05D007178 1.3e-69 267.7 273 52.7
MD04G1166800 Malus domestica HOM05D006201 ORTHO05D007178 5.0e-69 265.8 278 51.1
Duzib093G1324 Durio zibethinus HOM05D006201 ORTHO05D007178 6.6e-69 265.4 269 54.3
PSO017G2042 Papaver somniferum HOM05D006201 ORTHO05D007178 1.5e-68 264.2 273 52.0
TWI77G1003 Tripterygium wilfordii HOM05D006201 ORTHO05D007178 1.5e-68 264.2 291 51.5
Thecc.05G006600 Theobroma cacao HOM05D006201 ORTHO05D007178 7.3e-68 261.9 280 51.4
Hma1.2p1_0479F.1_g161690 Hydrangea macrophylla HOM05D006201 ORTHO05D007178 1.6e-67 260.8 271 52.4
vmacro20327 Vaccinium macrocarpon HOM05D006201 ORTHO05D007178 2.1e-67 260.4 275 53.8
RcHm_v2.0_Chr3g0461591 Rosa chinensis HOM05D006201 ORTHO05D007178 2.6e-65 253.4 277 48.4
Manes.09G111900 Manihot esculenta HOM05D006201 ORTHO05D007178 1.7e-64 250.8 277 52.7
CiPaw.09G215500 Carya illinoinensis HOM05D006201 ORTHO05D007178 2.2e-64 250.4 276 53.6
Gohir.A04G095500 Gossypium hirsutum HOM05D006201 ORTHO05D007178 4.9e-64 249.2 284 49.3
Gohir.D04G135400 Gossypium hirsutum HOM05D006201 ORTHO05D007178 4.9e-64 249.2 284 50.0
Actinidia11549 Actinidia chinensis HOM05D006201 ORTHO05D007178 8.3e-64 248.4 277 52.3
Gorai.012G119200 Gossypium raimondii HOM05D006201 ORTHO05D007178 1.1e-63 248.1 284 49.6
Oeu020418.1 Olea europaea HOM05D006201 ORTHO05D007178 2.4e-63 246.9 280 48.9
FAN02G1356 Fragaria x ananassa HOM05D006201 ORTHO05D007178 4.1e-63 246.1 277 46.9
Rhsim05G0225800 Rhododendron simsii HOM05D006201 ORTHO05D007178 4.1e-63 246.1 275 52.0
FAN05G0066 Fragaria x ananassa HOM05D006201 ORTHO05D007178 2.7e-62 243.4 277 46.2
FAN05G0393 Fragaria x ananassa HOM05D006201 ORTHO05D007178 2.7e-62 243.4 277 46.2
CANSAT35G1627 Cannabis sativa HOM05D006201 ORTHO05D007178 4.6e-62 242.7 277 49.5
FvH4_6g10600 Fragaria vesca HOM05D006201 ORTHO05D007178 4.6e-62 242.7 277 46.2
Sabra16G0130900 Salix brachista HOM05D006201 ORTHO05D007178 4.6e-62 242.7 270 51.1
FAN14G5119 Fragaria x ananassa HOM05D006201 ORTHO05D007178 6.0e-62 242.3 277 46.2
Potri.016G127500 Populus trichocarpa HOM05D006201 ORTHO05D007178 6.0e-62 242.3 264 51.1
Cpa.g.sc861.1 Carica papaya HOM05D006201 ORTHO05D007178 6.6e-61 238.8 275 50.9
Psat3g124360 Pisum sativum HOM05D006201 ORTHO05D007178 6.8e-58 228.8 279 48.7
VMungo1383G1579 Vigna mungo HOM05D006201 ORTHO05D007178 1.7e-56 224.2 269 49.8
TPR.G6637 Trifolium pratense HOM05D006201 ORTHO05D007178 3.2e-55 219.9 277 48.4
Medtr7g070280 Medicago truncatula HOM05D006201 ORTHO05D007178 1.2e-54 218.0 272 48.2
Sed0013207 Sechium edule HOM05D006201 ORTHO05D007178 1.2e-54 218.0 275 45.8
Glyma.07G156700 Glycine max HOM05D006201 ORTHO05D007178 1.6e-54 217.6 269 50.2
MSTRG.5539 Avicennia marina HOM05D006201 ORTHO05D007178 6.0e-54 215.7 276 44.2
PGR004G1794 Punica granatum HOM05D006201 ORTHO05D007178 1.0e-53 214.9 280 47.5
CAN.G1473.10 Capsicum annuum HOM05D006201 ORTHO05D007178 3.3e-52 209.9 281 43.8
Nitab4.5_0006173g0010 Nicotiana tabacum HOM05D006201 ORTHO05D007178 7.3e-52 208.8 252 46.0
Lj1g0025030 Lotus japonicus HOM05D006201 ORTHO05D007178 2.1e-51 207.2 278 47.1
Solyc01g090260.5.1 Solanum lycopersicum HOM05D006201 ORTHO05D007178 3.6e-51 206.5 281 43.4
Sopen01g036050 Solanum pennellii HOM05D006201 ORTHO05D007178 4.7e-51 206.1 281 43.1
PGSC0003DMG400026051 Solanum tuberosum HOM05D006201 ORTHO05D007178 1.1e-50 204.9 281 42.7
MELO3C004988.2 Cucumis melo HOM05D006201 ORTHO05D007178 1.8e-50 204.1 275 42.9
Lalb_Chr01g0023361 Lupinus albus HOM05D006201 ORTHO05D007178 6.8e-50 202.2 276 44.6
CsaV3_1G013180 Cucumis sativus L. HOM05D006201 ORTHO05D007178 7.6e-49 198.7 277 42.6
Rhsim05G0226000 Rhododendron simsii HOM05D006201 ORTHO05D007178 3.8e-48 196.4 272 45.6
ClCG03G002510 Citrullus lanatus HOM05D006201 ORTHO05D007178 4.9e-48 196.1 280 42.9
Nitab4.5_0003493g0040 Nicotiana tabacum HOM05D006201 ORTHO05D007178 4.9e-48 196.1 281 41.6
DCAR_023994 Daucus carota HOM05D006201 ORTHO05D007178 6.4e-48 195.7 269 43.9
Sc22g0002850 Simmondsia chinensis HOM05D006201 ORTHO05D007178 1.2e-46 191.4 276 39.9
Migut.J00094 Erythranthe guttata HOM05D006201 ORTHO05D007178 2.7e-46 190.3 282 42.2
AUR62036404 Chenopodium quinoa HOM05D006201 ORTHO05D007178 1.3e-45 188.0 272 40.8
Cc06_g00730 Coffea canephora HOM05D006201 ORTHO05D007178 1.7e-45 187.6 275 43.6
AUR62030757 Chenopodium quinoa HOM05D006201 ORTHO05D007178 3.0e-45 186.8 272 40.1
AUR62044474 Chenopodium quinoa HOM05D006201 ORTHO05D007178 3.0e-45 186.8 272 40.1
ATR0605G310 Amborella trichopoda HOM05D006201 ORTHO05D007178 5.1e-45 186.0 282 45.0
EL10Ac5g12480 Beta vulgaris HOM05D006201 ORTHO05D007178 6.6e-45 185.7 278 40.3
Eucgr.K02944 Eucalyptus grandis HOM05D006201 ORTHO05D007178 1.5e-44 184.5 278 43.2
HanXRQChr12g0375461 Helianthus annuus HOM05D006201 ORTHO05D007178 4.8e-43 179.5 295 41.7
CARHR083120 Cardamine hirsuta HOM05D006201 ORTHO05D007178 8.1e-43 178.7 276 39.5
Aa31LG5G18800 Aethionema arabicum HOM05D006201 ORTHO05D007178 1.4e-42 177.9 288 36.8
AL3G19800 Arabidopsis lyrata HOM05D006201 ORTHO05D007178 2.4e-42 177.2 275 38.5
Hund14942 Selenicereus undatus HOM05D006201 ORTHO05D007178 2.4e-42 177.2 275 39.3
A05p40010 Brassica napus HOM05D006201 ORTHO05D007178 3.1e-42 176.8 294 38.1
BraA05t22910Z Brassica rapa HOM05D006201 ORTHO05D007178 3.1e-42 176.8 294 38.1
Ah.12g059100 Amaranthus hybridus HOM05D006201 ORTHO05D007178 4.0e-42 176.4 271 39.9
arahy.Tifrunner.gnm1.ann1.0N3F9M Arachis hypogaea HOM05D006201 ORTHO05D007178 5.3e-42 176.0 276 40.9
Zm00001eb012870 Zea mays HOM05D006201 ORTHO05D007178 2.0e-41 174.1 271 41.0
arahy.Tifrunner.gnm1.ann1.WUZ318 Arachis hypogaea HOM05D006201 ORTHO05D007178 4.4e-41 172.9 276 40.6
C05p59050 Brassica napus HOM05D006201 ORTHO05D007178 5.8e-41 172.6 294 37.1
BolC5t34557H Brassica oleracea HOM05D006201 ORTHO05D007178 5.8e-41 172.6 294 37.1
ECA248G2923 Erigeron canadensis HOM05D006201 ORTHO05D007178 1.3e-40 171.4 297 38.0
Sp3g07220 Schrenkiella parvula HOM05D006201 ORTHO05D007178 5.1e-37 159.5 275 37.1
BcaC05g29618 Brassica carinata HOM05D006201 ORTHO05D007178 8.7e-37 158.7 286 36.0
Thhalv10022535m.g Eutrema salsugineum HOM05D006201 ORTHO05D007178 1.5e-36 157.9 275 35.3
Carub.0003s0793 Capsella rubella HOM05D006201 ORTHO05D007178 1.9e-36 157.5 275 35.6
THA.LOC104823304 Tarenaya hassleriana HOM05D006201 ORTHO05D007178 1.9e-36 157.5 274 36.5
HPP92_025099 Vanilla planifolia HOM05D006201 ORTHO05D007178 1.3e-35 154.8 313 35.5
SGA_v2.0_scaffold85G26680 Striga asiatica HOM05D006201 ORTHO05D007178 8.1e-35 152.1 278 41.7
Lsat_1_v5_gn_5_149661 Lactuca sativa HOM05D006201 ORTHO05D007178 1.4e-34 151.4 284 36.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.4e-32 142.1 84 88.1
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.4e-32 142.1 84 88.1
ClCG10G022450 Citrullus lanatus HOM05D006201 ORTHO05D007178 4.2e-31 139.8 255 38.8
COL.COLO4_14449 Corchorus olitorius HOM05D006201 ORTHO05D007178 2.7e-30 137.1 181 43.1
SEGI_30477 Sequoiadendron giganteum HOM05D006201 ORTHO05D007178 1.1e-28 131.7 285 32.3
Peaxi162Scf00028g00413 Petunia axillaris HOM05D006201 ORTHO05D007178 3.3e-28 130.2 203 39.9
unitig_578.g15909 Utricularia gibba HOM05D006201 ORTHO05D007178 2.3e-21 107.5 270 34.4
CDE04G1687 Ceratophyllum demersum HOM05D006201 ORTHO05D007178 5.7e-20 102.8 110 45.5
Nn2g13629 Nelumbo nucifera HOM05D001630 ORTHO05D007178 4.1e-18 96.7 73 58.9
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 9.0e-18 95.5 84 58.3
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 2.6e-17 94.0 84 56.0
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 7.6e-17 92.4 85 60.0
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 7.6e-17 92.4 85 60.0
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 5.0e-16 89.7 85 62.4
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 1.4e-15 88.2 85 58.8
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 1.4e-15 88.2 85 58.8
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 1.4e-15 88.2 85 57.6
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.9e-15 87.8 85 57.6
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 2.5e-15 87.4 85 55.3
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 4.2e-15 86.7 85 60.0
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 4.2e-15 86.7 85 58.8
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 7.1e-15 85.9 86 60.5
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 7.1e-15 85.9 82 59.8
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 9.3e-15 85.5 85 57.6
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.1e-14 84.3 88 55.7
Ca_07697_v3 Cicer arietinum L. HOM05D006201 ORTHO05D007178 2.7e-14 84.0 109 45.9
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.0e-13 82.0 81 56.8
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 2.3e-13 80.9 85 52.9
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 3.0e-13 80.5 86 51.2
CARHR220410 Cardamine hirsuta HOM05D006201 ORTHO05D007178 3.0e-13 80.5 132 34.8
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.7e-13 79.0 84 52.4
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 1.1e-12 78.6 84 51.2
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.1e-12 78.6 84 52.4
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 1.9e-12 77.8 83 51.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 2.5e-12 77.4 85 51.8
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 7.4e-12 75.9 84 50.0
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 9.7e-12 75.5 84 51.2
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 9.7e-12 75.5 85 52.9
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 2.8e-11 73.9 85 49.4
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 3.7e-11 73.6 85 47.1
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 6.3e-11 72.8 84 47.6
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 8.2e-11 72.4 82 47.6
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.1e-10 72.0 84 50.0
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 1.4e-10 71.6 85 50.6
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.8e-10 71.2 85 50.6
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 2.4e-10 70.9 84 54.8
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 2.4e-10 70.9 89 51.7
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 3.1e-10 70.5 85 49.4
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.1e-10 70.1 85 50.6
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 4.1e-10 70.1 89 47.2
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 4.1e-10 70.1 85 49.4
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 5.3e-10 69.7 82 43.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 6.9e-10 69.3 84 46.4
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 6.9e-10 69.3 90 48.9
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 9.0e-10 68.9 84 47.6
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.5e-09 68.2 84 50.0
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 2.0e-09 67.8 88 44.3
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.6e-09 67.4 82 50.0
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.6e-09 67.4 87 50.6
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.6e-09 67.4 84 39.3
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.4e-09 67.0 84 44.0
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.4e-09 67.0 84 48.8
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 3.4e-09 67.0 87 47.1
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 7.7e-09 65.9 84 48.8
CSS0012693 Camellia sinensis var. sinensis HOM05D006201 ORTHO05D007178 1.7e-08 64.7 84 47.6
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.7e-08 64.7 84 48.8
Mapoly0011s0138 Marchantia polymorpha HOM05D006201 ORTHO05D007178 2.2e-08 64.3 292 24.3
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.8e-08 63.5 84 47.6
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 5.0e-08 63.2 84 42.9
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 6.5e-08 62.8 84 46.4
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 6.5e-08 62.8 84 47.6
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 8.5e-08 62.4 82 48.8
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 1.1e-07 62.0 84 45.2
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 1.9e-07 61.2 85 43.5
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 2.5e-07 60.8 88 43.2
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 4.2e-07 60.1 84 46.4
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 9.4e-07 58.9 92 41.3
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.7e-06 57.4 84 41.7
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 3.6e-06 57.0 84 44.0
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 3.6e-06 57.0 85 47.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 6.1e-06 56.2 84 42.9
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 7.9e-06 55.8 84 40.5


User provided reference genes

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