Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 3533.8 1821 100.0
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2790.0 1813 78.4
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2789.6 1823 78.7
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2735.3 1814 76.5
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2718.3 1813 76.1
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2689.1 1826 76.7
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2664.8 1861 73.1
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2654.0 1820 74.6
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2639.8 1815 73.7
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2630.9 1816 73.3
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2611.6 1814 72.6
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2603.5 1838 72.7
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2601.6 1809 72.9
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2598.2 1817 73.0
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2596.2 1838 72.5
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2592.4 1808 73.9
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2590.8 1806 72.5
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2588.5 1820 72.3
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2572.7 1813 72.6
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2567.7 1816 71.5
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2564.6 1815 72.1
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2560.4 2362 59.7
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2559.6 1820 71.8
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2558.9 1853 72.3
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2544.6 1815 71.0
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2509.2 1807 70.1
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2507.2 1814 70.3
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2503.0 1813 70.4
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2499.5 1822 69.2
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 2498.0 1823 70.0
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2492.6 1809 69.3
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2491.1 1804 69.1
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 2487.2 1807 70.1
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 2482.2 1809 69.8
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2479.1 1820 69.7
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 2474.9 1820 69.6
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2468.0 1801 69.4
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2463.3 1838 68.8
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2462.2 1808 69.8
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2460.6 1806 69.2
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2453.3 1801 69.1
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2449.5 1819 69.3
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2449.5 1811 69.0
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2447.2 1820 68.7
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2447.2 1823 68.7
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2442.5 1809 68.0
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2441.8 1823 68.5
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2439.8 1807 68.5
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2439.1 1834 68.5
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2438.3 1809 69.4
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 2436.4 1816 69.1
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2433.7 1814 69.0
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2429.1 1810 68.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2425.2 1813 68.4
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2417.5 1806 67.9
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2400.2 1810 68.0
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2387.1 1809 67.8
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2366.7 1808 67.1
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2363.6 1981 62.6
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2363.2 1830 66.7
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 2363.2 1784 68.3
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2359.7 1844 66.4
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2340.1 1806 67.4
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2336.2 1816 65.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2335.1 1889 64.8
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2334.3 1822 65.0
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2332.4 1816 65.1
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2327.7 1815 64.7
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2327.4 1833 64.8
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2326.2 1815 64.8
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2323.9 1827 64.8
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2323.9 1819 65.0
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2309.3 1814 64.8
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2255.7 1829 63.3
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2254.6 1838 63.2
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 2251.5 1504 76.2
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2183.7 1822 61.8
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2120.1 1484 72.6
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 2058.1 1397 74.7
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1946.4 1359 72.3
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1939.1 1398 70.4
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1925.2 1330 73.3
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1868.6 1311 72.5
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1822.0 1348 70.5
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1738.0 1341 68.6
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1714.5 1855 49.6
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1706.0 1225 72.9
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1647.9 1814 50.9
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1640.2 1870 48.2
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1598.9 1892 47.3
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1542.3 1157 67.9
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1523.8 1090 71.5
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1477.6 1661 48.9
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1388.2 1120 63.5
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1370.5 1353 56.6
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1255.4 1053 61.9
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1213.0 905 66.9
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.3e-303 1047.3 886 62.1
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 1.7e-298 1030.4 1596 37.9
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.9e-257 894.0 1730 34.1
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 4.0e-252 876.3 796 57.5
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.4e-249 867.8 1744 33.9
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.8e-245 853.6 636 67.8
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 2.7e-216 757.3 600 66.3
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 2.0e-214 751.1 512 74.6
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.0e-194 683.3 670 54.9
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 7.5e-182 642.9 449 71.9
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 5.2e-175 620.2 452 69.7
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-164 585.9 449 67.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 7.0e-164 583.2 511 59.7
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 5.0e-162 577.0 2015 26.7
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 1.8e-159 568.5 450 68.9
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.1e-151 541.2 347 78.1
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 2.5e-137 495.0 315 77.1
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 5.8e-134 483.8 831 39.7
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 1.9e-116 425.6 369 62.3
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 9.0e-111 406.8 1632 24.8
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.9e-100 372.5 290 64.8
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 3.0e-98 365.2 275 66.2
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.8e-95 355.9 277 65.0
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.9e-90 338.2 279 60.2
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 6.3e-80 304.3 161 90.7
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 9.4e-76 290.4 342 51.5
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.1e-71 276.9 343 43.7
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 2.0e-70 272.7 194 73.7
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.1e-63 248.8 206 59.2
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 6.8e-58 231.1 163 66.9
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 2.9e-48 199.1 191 55.0
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 3.7e-48 198.7 221 47.1
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 8.3e-48 197.6 283 44.2
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-47 196.8 171 65.5
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.2e-47 195.7 147 65.3
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 7.8e-46 191.0 183 59.6
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 1.0e-45 190.7 183 59.0
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 1.1e-44 187.2 130 72.3
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 1.5e-44 186.8 337 39.5
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 4.9e-40 171.8 170 52.4
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 5.4e-39 168.3 143 65.0
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.0e-37 164.1 258 40.3
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 2.4e-34 152.9 167 53.3
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 1.3e-32 147.1 170 47.1
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 2.1e-30 139.8 161 47.2
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 8.7e-29 134.4 164 48.8
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.1e-28 134.0 175 47.4
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 3.6e-27 129.0 84 75.0
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.9e-25 120.9 81 79.0
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 2.9e-24 119.4 73 79.5
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 7.1e-23 114.8 172 40.7
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 1.1e-20 107.5 104 55.8
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 2.5e-20 106.3 196 30.1
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 4.3e-20 105.5 84 60.7
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 7.3e-20 104.8 89 58.4
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 5.3e-18 98.6 77 68.8
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 3.5e-14 85.9 66 68.2
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 7.9e-14 84.7 69 52.2
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 1.0e-13 84.3 115 40.0
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 7.4e-12 78.2 55 63.6
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 2.4e-10 73.2 60 60.0
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 3.4e-09 69.3 120 39.2
MELO3C033954.2 Cucumis melo HOM05D004500 ORTHO05D005775 5.5e-07 62.0 48 56.2
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.2e-06 60.8 38 78.9


User provided reference genes

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