Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 0.0e+00 1473.0 764 100.0
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 0.0e+00 1229.2 735 85.0
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 0.0e+00 1224.2 735 84.8
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 0.0e+00 1209.1 727 85.8
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 0.0e+00 1199.5 735 82.6
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 0.0e+00 1195.6 735 83.0
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 0.0e+00 1186.4 730 82.1
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 0.0e+00 1184.5 735 82.7
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 0.0e+00 1183.3 735 81.6
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 0.0e+00 1177.2 735 82.0
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 0.0e+00 1173.7 728 82.3
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 0.0e+00 1169.5 735 81.0
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 0.0e+00 1168.3 735 81.9
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 0.0e+00 1167.1 735 80.7
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 0.0e+00 1164.4 735 81.1
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 0.0e+00 1148.3 735 80.1
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 0.0e+00 1148.3 735 81.0
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 0.0e+00 1147.1 735 79.9
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 0.0e+00 1146.3 736 80.0
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 0.0e+00 1142.9 729 80.2
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 0.0e+00 1142.1 735 79.7
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 0.0e+00 1139.0 736 79.2
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 0.0e+00 1138.3 736 79.6
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 0.0e+00 1135.9 735 79.5
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 0.0e+00 1135.2 728 80.2
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 0.0e+00 1132.9 736 79.1
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 0.0e+00 1129.8 736 79.2
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 0.0e+00 1127.5 736 78.7
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 0.0e+00 1125.9 735 78.6
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 0.0e+00 1125.2 735 77.3
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 0.0e+00 1125.2 735 78.4
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 0.0e+00 1123.2 736 78.5
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 0.0e+00 1121.7 736 78.4
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 0.0e+00 1119.4 735 77.8
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 0.0e+00 1118.2 731 80.0
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 0.0e+00 1116.7 735 77.8
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 0.0e+00 1116.7 735 78.0
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 0.0e+00 1115.1 735 77.6
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 0.0e+00 1110.1 735 77.8
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 0.0e+00 1108.6 729 77.5
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 0.0e+00 1107.8 735 77.0
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 0.0e+00 1106.7 735 77.4
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 0.0e+00 1105.9 735 77.4
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 0.0e+00 1101.3 735 77.1
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 0.0e+00 1099.0 688 80.5
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 0.0e+00 1097.8 735 77.4
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 0.0e+00 1095.9 733 77.2
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 0.0e+00 1094.3 735 76.1
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 0.0e+00 1094.3 735 76.1
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 0.0e+00 1094.0 736 76.8
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 0.0e+00 1092.0 736 76.2
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 0.0e+00 1090.9 735 76.7
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 0.0e+00 1090.9 735 76.2
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 0.0e+00 1090.1 735 76.3
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 0.0e+00 1088.9 735 76.1
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 0.0e+00 1088.9 811 71.8
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 0.0e+00 1087.0 735 76.1
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 0.0e+00 1082.4 736 75.8
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 0.0e+00 1080.5 738 75.5
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 0.0e+00 1077.4 728 77.1
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 0.0e+00 1077.4 728 77.2
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 5.2e-312 1074.7 736 75.0
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.4e-310 1069.3 736 76.1
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 5.7e-309 1063.9 736 74.0
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 1.3e-308 1062.8 749 74.1
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 8.2e-308 1060.1 736 74.3
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.6e-306 1055.8 736 72.8
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 3.5e-306 1054.7 730 74.9
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 1.7e-305 1052.4 735 74.3
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.9e-305 1051.6 746 74.1
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 2.7e-303 1045.0 735 74.1
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 3.6e-303 1044.6 738 74.3
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 1.4e-302 1042.7 735 73.2
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 6.8e-302 1040.4 742 73.3
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 1.5e-301 1039.3 743 74.7
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 8.3e-300 1033.5 736 71.7
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 8.3e-300 1033.5 736 71.7
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 1.1e-299 1033.1 735 73.1
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 7.0e-299 1030.4 736 71.6
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 2.0e-298 1028.9 737 71.0
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 2.0e-298 1028.9 737 71.0
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 3.5e-298 1028.1 736 71.5
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 4.5e-298 1027.7 736 71.5
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 1.7e-297 1025.8 738 71.1
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 2.9e-297 1025.0 737 70.8
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 2.9e-297 1025.0 742 70.6
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 8.5e-297 1023.5 737 71.4
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 8.5e-297 1023.5 736 71.2
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.9e-296 1022.3 738 70.9
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 2.5e-296 1021.9 737 70.8
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 4.2e-296 1021.1 649 80.3
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 2.3e-294 1015.4 714 72.1
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 5.2e-294 1014.2 737 70.7
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 4.4e-293 1011.1 736 70.8
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 7.5e-293 1010.4 736 70.2
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 1.3e-292 1009.6 737 70.1
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 2.7e-290 1001.9 736 69.8
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 1.0e-289 1000.0 735 70.5
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 2.3e-289 998.8 736 69.6
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 2.8e-287 991.9 737 69.2
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 8.0e-287 990.3 637 80.4
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 3.2e-283 978.4 598 83.9
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 6.6e-281 970.7 733 69.3
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.2e-279 966.5 742 67.9
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 4.0e-278 961.4 713 69.8
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 4.6e-274 948.0 722 70.6
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.0e-273 946.8 735 68.6
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 1.3e-273 946.4 730 65.9
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.5e-269 932.9 574 83.4
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 1.4e-267 926.4 730 67.5
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 3.3e-264 915.2 569 82.8
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 3.1e-262 908.7 681 69.8
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 1.2e-261 906.7 730 66.7
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 4.9e-260 901.4 734 64.7
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 2.1e-258 896.0 730 64.8
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.3e-256 888.6 772 65.4
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 4.8e-247 858.2 774 63.3
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.3e-240 835.5 731 65.3
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 5.3e-238 828.2 729 60.6
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 3.4e-237 825.5 754 59.0
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 7.6e-229 797.7 568 71.3
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 1.3e-225 786.9 649 63.8
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 2.5e-219 766.1 752 56.4
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 5.1e-217 758.4 756 54.2
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 1.5e-216 756.9 486 80.7
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 2.6e-213 746.1 735 58.9
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 5.9e-213 745.0 750 54.3
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 1.7e-199 700.3 747 52.6
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 7.5e-192 674.9 442 76.9
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.2e-150 536.6 348 75.6
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 6.6e-148 528.9 537 58.7
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 1.6e-141 507.7 442 57.7
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.4e-121 441.4 370 64.9
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.4e-121 441.4 412 57.3
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 9.9e-120 435.3 433 58.0
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 1.5e-112 411.4 283 71.7
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 2.8e-106 390.6 283 70.7
Dinv38912 Davidia involucrata HOM05D003450 ORTHO05D004150 1.1e-105 388.7 233 88.8
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 6.9e-105 386.0 835 34.3
Gohir.A05G354750 Gossypium hirsutum HOM05D003450 ORTHO05D004150 6.9e-105 386.0 228 89.0
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 1.5e-104 384.8 790 36.6
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 2.3e-100 370.9 425 53.2
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.0e-92 345.5 327 58.4
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.3e-87 328.6 242 67.8
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 7.2e-86 322.8 263 67.3
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.3e-84 317.8 226 68.1
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 8.8e-84 315.8 328 54.3
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 6.3e-82 309.7 444 46.2
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 1.7e-79 301.6 649 35.1
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.3e-76 291.2 220 68.2
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 2.5e-70 271.2 706 33.0
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 1.4e-68 265.4 205 68.3
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 9.8e-67 259.2 203 67.0
Zm00001eb137620 Zea mays HOM05D003450 ORTHO05D004150 2.7e-64 251.1 196 68.4
Cre06.g271950 Chlamydomonas reinhardtii HOM05D003450 ORTHO05D004150 2.6e-59 234.6 731 28.2
SEGI_37208 Sequoiadendron giganteum HOM05D003450 ORTHO05D004150 3.4e-59 234.2 169 75.1
arahy.Tifrunner.gnm1.ann1.ST064T Arachis hypogaea HOM05D003450 ORTHO05D004150 6.3e-58 229.9 325 49.8
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 7.8e-56 223.0 264 53.8
Prupe.3G293500 Prunus persica HOM05D003450 ORTHO05D004150 1.5e-51 208.8 134 82.1
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 6.4e-42 176.8 117 76.1
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 5.4e-41 173.7 116 73.3
Cfa023435 Carpinus fangiana HOM05D003450 ORTHO05D125710 6.2e-37 160.2 246 43.1
Atru.chr6.2427 Acer truncatum HOM05D003450 ORTHO05D004150 7.3e-30 136.7 93 74.2
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 4.7e-29 134.0 87 73.6
Hund02493 Selenicereus undatus HOM05D003450 ORTHO05D004150 3.1e-28 131.3 86 75.6
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 6.8e-28 130.2 117 59.0
EL10Ac5g11312 Beta vulgaris HOM05D003450 ORTHO05D004150 3.8e-26 124.4 81 75.3
Aqoxy2G03587 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 4.2e-25 120.9 91 68.1
Zm00001eb128800 Zea mays HOM05D003450 ORTHO05D004150 1.7e-23 115.5 89 62.9
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 2.5e-22 111.7 376 28.5
Hma1.2p1_0035F.1_g022380 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.3e-21 109.4 83 63.9
arahy.Tifrunner.gnm1.ann1.CAW9WT Arachis hypogaea HOM05D003450 ORTHO05D026894 8.1e-21 106.7 90 67.8
arahy.Tifrunner.gnm1.ann1.F4W2B8 Arachis hypogaea HOM05D003450 ORTHO05D004150 1.1e-20 106.3 91 67.0
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 1.3e-18 99.4 117 50.4
arahy.Tifrunner.gnm1.ann1.84ZZZT Arachis hypogaea HOM05D003450 ORTHO05D026894 3.3e-14 84.7 76 63.2
Os09g0135100 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 4.8e-13 80.9 63 63.5
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 5.4e-09 67.4 46 67.4
FvH4_1g06690 Fragaria vesca HOM05D003450 ORTHO05D004150 4.6e-08 64.3 41 75.6
Lsat_1_v5_gn_9_20240 Lactuca sativa HOM05D000349 ORTHO05D013656 1.5e-06 59.3 50 68.0
CSS0014830 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D112628 5.6e-06 57.4 84 42.9
CSS0043641 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D110033 7.4e-06 57.0 84 42.9


User provided reference genes

Program Settings