Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 6.4e-39 163.7 87 100.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.7e-23 112.5 81 75.3
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 4.9e-23 110.9 75 76.0
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 4.1e-22 107.8 76 75.0
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.2e-22 106.7 73 78.1
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.6e-21 105.9 81 67.9
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 2.1e-21 105.5 74 74.3
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.7e-20 102.4 71 73.2
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.7e-20 102.4 80 70.0
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 3.0e-20 101.7 84 64.3
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 5.1e-20 100.9 74 70.3
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.1e-19 99.8 86 62.8
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.9e-19 99.0 76 71.1
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.9e-19 99.0 73 68.5
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.3e-19 98.2 78 69.2
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 5.6e-19 97.4 86 67.4
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 7.3e-19 97.1 86 67.4
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 7.3e-19 97.1 77 64.9
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 7.3e-19 97.1 90 63.3
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 9.5e-19 96.7 69 72.5
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 9.5e-19 96.7 82 65.9
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.2e-18 96.3 70 70.0
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.6e-18 95.9 85 65.9
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 2.1e-18 95.5 73 69.9
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 2.1e-18 95.5 73 69.9
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 2.1e-18 95.5 87 65.5
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 2.1e-18 95.5 70 71.4
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.1e-18 95.5 70 70.0
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-18 95.1 73 69.9
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 3.6e-18 94.7 75 62.7
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 4.7e-18 94.4 99 55.6
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 8.1e-18 93.6 73 67.1
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.1e-17 93.2 73 69.9
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 1.1e-17 93.2 73 68.5
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-17 93.2 73 68.5
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 1.1e-17 93.2 73 68.5
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.4e-17 92.8 74 64.9
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.8e-17 92.4 72 68.1
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-17 92.4 76 64.5
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 1.8e-17 92.4 76 64.5
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.4e-17 92.0 73 65.8
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 3.1e-17 91.7 73 65.8
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 4.0e-17 91.3 73 68.5
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 4.0e-17 91.3 73 64.4
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 4.0e-17 91.3 77 62.3
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 4.0e-17 91.3 105 54.3
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 5.2e-17 90.9 73 64.4
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 5.2e-17 90.9 71 69.0
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 5.2e-17 90.9 87 57.5
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 1.2e-16 89.7 98 54.1
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 1.2e-16 89.7 85 61.2
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.5e-16 89.4 73 64.4
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 1.7e-15 85.9 78 61.5
HPP92_013935 Vanilla planifolia HOM05D005113 ORTHO05D006045 1.7e-15 85.9 77 62.3
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.2e-15 85.5 82 61.0
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 2.9e-15 85.1 85 61.2
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 3.8e-15 84.7 71 59.2
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 6.4e-15 84.0 72 61.1
Eucgr.A02548 Eucalyptus grandis HOM05D005113 ORTHO05D006045 8.4e-15 83.6 75 61.3
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 8.4e-15 83.6 71 67.6
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 8.4e-15 83.6 70 65.7
Gohir.D09G128500 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-14 83.2 69 66.7
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.1e-14 83.2 71 67.6
Cfa019390 Carpinus fangiana HOM05D005113 ORTHO05D006045 1.4e-14 82.8 98 51.0
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 2.4e-14 82.0 85 57.6
HPP92_012153 Vanilla planifolia HOM05D005113 ORTHO05D006045 2.4e-14 82.0 77 64.9
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.2e-14 81.3 99 52.5
Gorai.006G147100 Gossypium raimondii HOM05D005113 ORTHO05D006045 4.2e-14 81.3 63 69.8
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 5.4e-14 80.9 68 63.2
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 5.4e-14 80.9 99 52.5
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 7.1e-14 80.5 99 52.5
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 7.1e-14 80.5 99 52.5
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.2e-14 80.1 99 52.5
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.2e-14 80.1 99 52.5
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.2e-13 79.7 69 63.8
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.2e-13 79.7 100 52.0
MSTRG.26588 Avicennia marina HOM05D005113 ORTHO05D006045 6.0e-13 77.4 90 53.3
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 7.8e-13 77.0 82 53.7
PGR004G1479 Punica granatum HOM05D005113 ORTHO05D006045 1.7e-12 75.9 82 56.1
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 3.0e-12 75.1 78 55.1
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 3.0e-12 75.1 100 49.0
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 6.6e-12 73.9 82 52.4
Rhsim04G0135100 Rhododendron simsii HOM05D005113 ORTHO05D006045 8.7e-12 73.6 73 61.6
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 1.1e-11 73.2 77 62.3
Manes.09G042200 Manihot esculenta HOM05D005113 ORTHO05D006045 1.5e-11 72.8 82 52.4
PSO384G4604 Papaver somniferum HOM05D005113 ORTHO05D006045 1.5e-11 72.8 95 49.5
Cc06_g06930 Coffea canephora HOM05D005113 ORTHO05D006045 3.3e-11 71.6 77 57.1
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 5.6e-11 70.9 68 60.3
AUR62036329 Chenopodium quinoa HOM05D005113 ORTHO05D006045 1.6e-10 69.3 63 60.3
Oeu045023.1 Olea europaea HOM05D005113 ORTHO05D006045 2.1e-10 68.9 71 57.7
Medtr7g106840 Medicago truncatula HOM05D005113 ORTHO05D006045 2.8e-10 68.6 84 50.0
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 3.6e-10 68.2 75 52.0
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 3.6e-10 68.2 75 53.3
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 2.4e-09 65.5 83 51.8
Migut.L01845 Erythranthe guttata HOM05D005113 ORTHO05D006045 2.4e-09 65.5 76 52.6
Oeu044708.1 Olea europaea HOM05D005113 ORTHO05D006045 3.1e-09 65.1 75 56.0
A09p45390 Brassica napus HOM05D005113 ORTHO05D006045 4.0e-09 64.7 78 53.8
Migut.J00732 Erythranthe guttata HOM05D005113 ORTHO05D006045 4.0e-09 64.7 87 49.4
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 5.3e-09 64.3 80 51.2
Solyc01g006760.3 Solanum lycopersicum HOM05D005113 ORTHO05D006045 6.9e-09 63.9 60 56.7
Sopen01g002760 Solanum pennellii HOM05D005113 ORTHO05D006045 6.9e-09 63.9 60 56.7
COL.COLO4_29500 Corchorus olitorius HOM05D005113 ORTHO05D006045 9.0e-09 63.5 66 54.5
Peaxi162Scf00203g00418 Petunia axillaris HOM05D005113 ORTHO05D006045 9.0e-09 63.5 81 50.6
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.2e-08 63.2 80 50.0
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-08 63.2 78 52.6
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 1.2e-08 63.2 78 52.6
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 1.2e-08 63.2 78 52.6
CDE07G0213 Ceratophyllum demersum HOM05D005113 ORTHO05D006045 2.0e-08 62.4 76 46.1
AUR62038432 Chenopodium quinoa HOM05D005113 ORTHO05D006045 2.0e-08 62.4 63 54.0
DCAR_020680 Daucus carota HOM05D005113 ORTHO05D006045 2.0e-08 62.4 62 58.1
Glyma.10G086500 Glycine max HOM05D005113 ORTHO05D006045 2.0e-08 62.4 63 54.0
HanXRQChr07g0196541 Helianthus annuus HOM05D005113 ORTHO05D006045 2.0e-08 62.4 54 64.8
Phvul.001G198200 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 2.0e-08 62.4 77 48.1
Sopen10g032200 Solanum pennellii HOM05D005113 ORTHO05D006045 2.0e-08 62.4 69 52.2
Solyc10g081690.1 Solanum lycopersicum HOM05D005113 ORTHO05D006045 2.6e-08 62.0 69 52.2
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 3.4e-08 61.6 78 51.3
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 3.4e-08 61.6 78 51.3
Psat3g027480 Pisum sativum HOM05D005113 ORTHO05D006045 3.4e-08 61.6 97 46.4
PGSC0003DMG400021340 Solanum tuberosum HOM05D005113 ORTHO05D006045 3.4e-08 61.6 60 55.0
ECA238G1367 Erigeron canadensis HOM05D005113 ORTHO05D006045 5.8e-08 60.8 65 52.3
PGSC0003DMG400028226 Solanum tuberosum HOM05D009103 ORTHO05D010883 5.8e-08 60.8 69 50.7
Lalb_Chr20g0111221 Lupinus albus HOM05D005113 ORTHO05D006045 7.6e-08 60.5 93 43.0
TPR.G34441 Trifolium pratense HOM05D005113 ORTHO05D006045 9.9e-08 60.1 83 48.2
Lj1g0007298 Lotus japonicus HOM05D005113 ORTHO05D006045 1.7e-07 59.3 98 41.8
DCAR_009075 Daucus carota HOM05D000059 ORTHO05D012409 2.2e-07 58.9 54 61.1
Lsat_1_v5_gn_2_101981 Lactuca sativa HOM05D005113 ORTHO05D006045 2.9e-07 58.5 52 63.5
PGR142G0458 Punica granatum HOM05D005113 ORTHO05D006045 3.8e-07 58.2 70 48.6
Lalb_Chr25g0287851 Lupinus albus HOM05D005113 ORTHO05D006045 4.9e-07 57.8 88 43.2
Phvul.007G265600 Phaseolus vulgaris HOM05D005113 ORTHO05D006045 4.9e-07 57.8 53 56.6
Glyma.02G187500 Glycine max HOM05D005113 ORTHO05D006045 8.4e-07 57.0 63 49.2
VMungo0720G0986 Vigna mungo HOM05D005113 ORTHO05D006045 8.4e-07 57.0 62 53.2
Nitab4.5_0000721g0120 Nicotiana tabacum HOM05D005113 ORTHO05D006045 1.1e-06 56.6 70 52.9
arahy.Tifrunner.gnm1.ann1.7K7EQP Arachis hypogaea HOM05D005113 ORTHO05D006045 2.4e-06 55.5 73 47.9
Glyma.19G202000 Glycine max HOM05D005113 ORTHO05D006045 3.2e-06 55.1 73 45.2
arahy.Tifrunner.gnm1.ann1.TS08QV Arachis hypogaea HOM05D005113 ORTHO05D006045 4.2e-06 54.7 67 50.7
arahy.Tifrunner.gnm1.ann1.HSX17H Arachis hypogaea HOM05D005113 ORTHO05D006045 9.3e-06 53.5 61 49.2


User provided reference genes

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