Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 7.8e-104 380.6 204 100.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.3e-71 273.5 200 69.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 5.8e-67 258.1 201 62.2
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 2.1e-64 249.6 200 62.5
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.1e-62 243.8 199 61.8
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 1.1e-62 243.8 200 62.5
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 9.6e-62 240.7 199 58.3
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.4e-60 236.1 198 58.6
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 4.0e-60 235.3 198 58.1
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 9.0e-60 234.2 200 62.0
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 4.5e-59 231.9 201 60.7
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 5.8e-59 231.5 201 56.7
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.9e-58 229.2 199 58.3
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 8.4e-58 227.6 199 55.8
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.9e-57 226.5 199 55.8
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.2e-57 225.7 199 55.8
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.1e-56 223.0 201 54.7
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 6.0e-56 221.5 199 51.8
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 2.3e-55 219.5 199 54.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.3e-55 219.5 199 55.3
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.5e-54 216.9 200 56.0
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.9e-54 216.5 199 54.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.3e-53 213.8 199 53.3
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.0e-52 207.6 199 52.8
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.5e-51 206.8 201 52.2
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-51 206.5 201 52.2
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.0e-51 206.5 201 52.2
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.0e-51 206.5 199 52.8
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.8e-51 204.9 198 51.5
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 1.0e-50 204.1 193 52.8
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.0e-50 204.1 199 49.2
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 4.9e-50 201.8 193 52.8
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 4.9e-50 201.8 199 52.8
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 2.5e-49 199.5 199 50.8
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.2e-49 198.7 204 53.9
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 7.1e-49 198.0 198 49.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.1e-49 198.0 198 50.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 1.2e-48 197.2 199 49.2
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 1.3e-47 193.7 188 53.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 4.3e-46 188.7 200 48.0
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 3.7e-45 185.7 192 50.0
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.7e-45 185.7 198 45.5
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 4.8e-45 185.3 201 49.3
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 6.3e-45 184.9 190 51.6
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 5.3e-44 181.8 184 48.4
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.2e-43 180.6 199 44.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.4e-43 179.1 199 43.7
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 5.9e-43 178.3 199 44.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 7.6e-43 177.9 214 45.8
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.0e-42 177.6 200 46.5
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.4e-41 173.7 199 42.2
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.5e-41 172.9 200 42.0
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.9e-38 163.3 199 41.2
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.9e-38 163.3 194 43.8
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.8e-37 158.7 189 40.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 6.9e-36 154.8 199 39.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 4.5e-35 152.1 271 34.7
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 1.0e-34 151.0 194 45.4
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.3e-34 150.6 196 39.3
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 6.5e-34 148.3 200 38.5
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 4.2e-33 145.6 108 75.9
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 9.4e-33 144.4 191 45.5
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 2.1e-32 143.3 199 35.2
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.1e-32 143.3 197 38.1
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 3.9e-31 139.0 199 36.2
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-31 139.0 199 36.2
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 3.3e-30 136.0 199 35.2
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 4.3e-30 135.6 107 66.4
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 4.3e-30 135.6 159 44.7
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.7e-29 133.7 197 39.1
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 4.1e-28 129.0 187 36.4
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 6.9e-28 128.3 107 62.6
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.0e-27 126.7 107 64.5
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.6e-27 126.3 201 35.3
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.4e-27 125.9 94 58.5
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 7.7e-27 124.8 198 37.4
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 7.7e-27 124.8 201 35.8
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.0e-26 124.4 199 35.2
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.3e-26 124.0 148 41.9
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.4e-25 120.6 198 33.8
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.4e-25 120.6 107 57.0
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.2e-25 119.0 107 55.1
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 5.5e-25 118.6 107 56.1
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 7.2e-25 118.2 113 56.6
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 1.2e-24 117.5 144 41.7
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 7.9e-24 114.8 107 57.0
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.0e-23 112.8 107 57.0
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 8.8e-23 111.3 107 54.2
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.0e-22 110.2 184 37.5
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-22 109.4 107 55.1
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.3e-21 107.5 107 55.1
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.3e-21 107.5 107 54.2
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.7e-21 107.1 107 55.1
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.7e-21 105.9 86 58.1
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 6.3e-21 105.1 92 53.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.8e-20 103.6 107 49.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.4e-20 103.2 86 54.7
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 3.1e-20 102.8 107 52.3
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.1e-20 102.4 163 38.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.3e-20 102.1 107 49.5
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 7.0e-20 101.7 107 49.5
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 1.2e-19 100.9 107 49.5
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 1.6e-19 100.5 107 48.6
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 3.5e-19 99.4 107 50.5
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 4.5e-19 99.0 74 62.2
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 2.2e-18 96.7 101 52.5
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 47.7
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 5.0e-18 95.5 101 51.5
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 8.5e-18 94.7 189 32.8
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 2.5e-17 93.2 204 29.4
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 9.4e-17 91.3 66 69.7
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 9.4e-17 91.3 137 38.0
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 2.7e-16 89.7 127 37.8
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.6e-16 89.4 127 44.9
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 1.4e-15 87.4 57 66.7
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 5.2e-15 85.5 87 51.7
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 5.2e-15 85.5 68 55.9
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 6.7e-15 85.1 59 61.0
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 8.8e-15 84.7 84 45.2
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 8.8e-15 84.7 110 42.7
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 1.5e-14 84.0 58 63.8
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 2.6e-14 83.2 81 44.4
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-14 82.8 100 48.0
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 7.5e-14 81.6 56 62.5
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 9.7e-14 81.3 81 43.2
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 1.7e-13 80.5 58 65.5
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.7e-13 80.5 107 44.9
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.7e-13 80.5 111 44.1
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 2.2e-13 80.1 192 27.1
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.7e-13 79.3 111 43.2
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 4.8e-13 79.0 62 54.8
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 8.2e-13 78.2 59 61.0
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.4e-12 76.6 117 43.6
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 4.1e-12 75.9 107 42.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 4.1e-12 75.9 56 55.4
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 5.3e-12 75.5 125 33.6
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 5.3e-12 75.5 125 33.6
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 5.3e-12 75.5 61 50.8
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.5e-11 72.8 108 38.9
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.9e-11 72.0 73 56.2
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.1e-09 67.8 52 55.8
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.1e-09 67.8 52 55.8
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 6.8e-07 58.5 105 33.3
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 1.5e-06 57.4 101 35.6
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 1.5e-06 57.4 105 32.4
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.0e-06 57.0 105 33.3
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 7.5e-06 55.1 100 32.0
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 9.8e-06 54.7 100 33.0


User provided reference genes

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