Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1229 Trochodendron aralioides HOM05D004084 ORTHO05D004662 8.1e-129 463.8 238 100.0
Dinv05100 Davidia involucrata HOM05D004084 ORTHO05D004662 8.0e-84 314.3 230 71.7
Thecc.09G249200 Theobroma cacao HOM05D004084 ORTHO05D004662 1.8e-83 313.2 229 71.2
Ciclev10016417m.g Citrus clementina HOM05D004084 ORTHO05D004662 5.2e-83 311.6 228 71.9
Dinv36171 Davidia involucrata HOM05D004084 ORTHO05D004662 2.6e-82 309.3 233 71.2
Manes.02G139800 Manihot esculenta HOM05D004084 ORTHO05D004662 1.3e-81 307.0 231 70.6
Cfa009849 Carpinus fangiana HOM05D004084 ORTHO05D004662 1.7e-81 306.6 230 71.3
Rhsim13G0210600 Rhododendron simsii HOM05D004084 ORTHO05D004662 2.8e-81 305.8 235 69.8
Atru.chr3.2757 Acer truncatum HOM05D004084 ORTHO05D004662 8.2e-81 304.3 236 69.1
MSTRG.21348 Avicennia marina HOM05D004084 ORTHO05D004662 4.1e-80 302.0 229 65.9
CiPaw.14G113600 Carya illinoinensis HOM05D004084 ORTHO05D004662 4.1e-80 302.0 232 72.4
Nitab4.5_0000718g0220 Nicotiana tabacum HOM05D004084 ORTHO05D004662 7.0e-80 301.2 237 67.1
CANSAT54G0855 Cannabis sativa HOM05D004084 ORTHO05D004662 9.1e-80 300.8 233 70.4
Hma1.2p1_0129F.1_g060160 Hydrangea macrophylla HOM05D004084 ORTHO05D004662 1.2e-79 300.4 232 70.3
Nitab4.5_0012538g0010 Nicotiana tabacum HOM05D004084 ORTHO05D004662 1.2e-79 300.4 236 66.5
Atru.chr4.1902 Acer truncatum HOM05D004084 ORTHO05D004662 2.7e-79 299.3 216 72.2
GSVIVG01037269001 Vitis vinifera HOM05D004084 ORTHO05D004662 3.5e-79 298.9 228 68.0
Potri.001G275900 Populus trichocarpa HOM05D004084 ORTHO05D004662 1.7e-78 296.6 228 68.9
TWI79G0099 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 2.2e-78 296.2 206 74.3
Potri.009G070600 Populus trichocarpa HOM05D004084 ORTHO05D004662 2.9e-78 295.8 228 69.7
Duzib150G1594 Durio zibethinus HOM05D004084 ORTHO05D004662 5.0e-78 295.0 232 69.4
Duzib168G1105 Durio zibethinus HOM05D004084 ORTHO05D004662 1.5e-77 293.5 244 66.8
VMungo0540G1882 Vigna mungo HOM05D004084 ORTHO05D004662 4.2e-77 292.0 210 71.9
FAN21G2250 Fragaria x ananassa HOM05D004084 ORTHO05D004662 7.2e-77 291.2 233 65.2
MBI13_g27798_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 7.2e-77 291.2 243 63.8
FvH4_3g27900 Fragaria vesca HOM05D004084 ORTHO05D004662 1.6e-76 290.0 240 65.0
PGSC0003DMG400009461 Solanum tuberosum HOM05D004084 ORTHO05D004662 1.6e-76 290.0 237 65.0
Solyc11g064830.2 Solanum lycopersicum HOM05D004084 ORTHO05D004662 3.6e-76 288.9 237 65.0
Sopen11g024490 Solanum pennellii HOM05D004084 ORTHO05D004662 4.7e-76 288.5 237 64.6
TWI75G0849 Tripterygium wilfordii HOM05D004084 ORTHO05D004662 8.0e-76 287.7 248 63.7
FAN16G3201 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.4e-75 287.0 240 64.6
Prupe.4G267100 Prunus persica HOM05D004084 ORTHO05D004662 1.4e-75 287.0 234 67.9
RcHm_v2.0_Chr5g0050631 Rosa chinensis HOM05D004084 ORTHO05D004662 1.4e-75 287.0 245 64.1
Lj1A284G15 Lonicera japonica HOM05D004084 ORTHO05D004662 1.8e-75 286.6 209 69.9
Nitab4.5_0001500g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 3.0e-75 285.8 205 68.8
ClCG02G022880 Citrullus lanatus HOM05D004084 ORTHO05D004662 4.0e-75 285.4 208 70.7
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 4.0e-75 285.4 238 66.0
Nitab4.5_0000730g0060 Nicotiana tabacum HOM05D001938 ORTHO05D004662 4.0e-75 285.4 230 63.9
Os01g0954400 Oryza sativa ssp. japonica HOM05D004084 ORTHO05D004662 5.2e-75 285.0 213 71.4
FAN25G0474 Fragaria x ananassa HOM05D004084 ORTHO05D004662 1.2e-74 283.9 240 63.8
Oeu016695.1 Olea europaea HOM05D004084 ORTHO05D004662 1.5e-74 283.5 228 64.0
Peaxi162Scf00004g04520 Petunia axillaris HOM05D004084 ORTHO05D004662 4.4e-74 282.0 232 65.5
Glyma.20G037400 Glycine max HOM05D004084 ORTHO05D004662 7.5e-74 281.2 209 72.2
MD11G1185700 Malus domestica HOM05D004084 ORTHO05D004662 7.5e-74 281.2 238 65.5
PGSC0003DMG400022698 Solanum tuberosum HOM05D004084 ORTHO05D004662 9.8e-74 280.8 235 64.3
Gohir.A13G219100 Gossypium hirsutum HOM05D004084 ORTHO05D004662 6.3e-73 278.1 226 68.1
MSTRG.17633 Avicennia marina HOM05D004084 ORTHO05D004662 8.3e-73 277.7 220 66.8
Gohir.D13G222800 Gossypium hirsutum HOM05D004084 ORTHO05D004662 1.8e-72 276.6 232 67.2
MSTRG.17516 Avicennia marina HOM05D004084 ORTHO05D004662 3.1e-72 275.8 220 67.3
Gohir.D09G106500 Gossypium hirsutum HOM05D004084 ORTHO05D004662 3.1e-72 275.8 233 67.4
Gorai.006G124000 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.1e-72 275.8 233 67.4
Gorai.013G253900 Gossypium raimondii HOM05D004084 ORTHO05D004662 3.1e-72 275.8 232 66.8
SGA_v2.0_scaffold29G12252 Striga asiatica HOM05D004084 ORTHO05D004662 3.1e-72 275.8 218 67.0
Gohir.A09G110200 Gossypium hirsutum HOM05D004084 ORTHO05D004662 4.1e-72 275.4 232 67.2
Oeu025904.1 Olea europaea HOM05D004084 ORTHO05D004662 7.0e-72 274.6 250 61.2
HanXRQChr14g0432231 Helianthus annuus HOM05D004084 ORTHO05D004662 9.1e-72 274.2 235 63.8
MBI19_g16738_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 1.2e-71 273.9 235 62.6
Sc06g0004680 Simmondsia chinensis HOM05D004084 ORTHO05D004662 2.0e-71 273.1 229 63.8
Phvul.006G030700 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.0e-70 270.8 220 64.5
Eucgr.B03731 Eucalyptus grandis HOM05D004084 ORTHO05D004662 1.3e-70 270.4 242 64.5
Ca_03985_v3 Cicer arietinum L. HOM05D004084 ORTHO05D004662 2.3e-70 269.6 214 70.1
MELO3C014562.2 Cucumis melo HOM05D004084 ORTHO05D004662 2.9e-70 269.2 209 69.4
Glyma.07G230600 Glycine max HOM05D004084 ORTHO05D004662 2.9e-70 269.2 209 70.8
Psat5g181240 Pisum sativum HOM05D004084 ORTHO05D004662 5.0e-70 268.5 238 60.5
Lalb_Chr10g0106291 Lupinus albus HOM05D004084 ORTHO05D004662 6.6e-70 268.1 283 56.2
Actinidia06961 Actinidia chinensis HOM05D004084 ORTHO05D004662 1.1e-69 267.3 189 74.1
ECA238G4029 Erigeron canadensis HOM05D004084 ORTHO05D004662 2.5e-69 266.2 219 65.3
Zm00001eb140640 Zea mays HOM05D004084 ORTHO05D004662 2.5e-69 266.2 235 61.3
HanXRQChr06g0182501 Helianthus annuus HOM05D004084 ORTHO05D004662 2.1e-68 263.1 219 67.1
Solyc01g008810.3 Solanum lycopersicum HOM05D004084 ORTHO05D004662 2.1e-68 263.1 232 62.1
Migut.N02373 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.8e-68 262.7 236 64.0
Sopen01g004320 Solanum pennellii HOM05D004084 ORTHO05D004662 2.8e-68 262.7 232 62.1
EL10Ac4g10147 Beta vulgaris HOM05D004084 ORTHO05D004662 4.7e-68 261.9 231 60.2
arahy.Tifrunner.gnm1.ann1.X3DJVQ Arachis hypogaea HOM05D004084 ORTHO05D004662 6.1e-68 261.5 213 69.5
Hund07438 Selenicereus undatus HOM05D004084 ORTHO05D004662 3.0e-67 259.2 250 55.6
Peaxi162Scf00032g02420 Petunia axillaris HOM05D004084 ORTHO05D004662 6.8e-67 258.1 257 57.6
Haze_23226 Corylus avellana HOM05D004084 ORTHO05D004662 1.2e-66 257.3 179 74.3
QL01p017232 Quercus lobata HOM05D004084 ORTHO05D004662 5.7e-66 255.0 180 76.7
Ah.04g161980 Amaranthus hybridus HOM05D004084 ORTHO05D004662 1.7e-65 253.4 229 59.0
PSO339G4433 Papaver somniferum HOM05D004084 ORTHO05D004662 3.1e-64 249.2 228 57.9
CsaV3_6G039010 Cucumis sativus L. HOM05D004084 ORTHO05D004662 5.4e-64 248.4 208 65.4
Sed0020433 Sechium edule HOM05D004084 ORTHO05D004662 5.4e-64 248.4 234 59.0
Lsat_1_v5_gn_2_32240 Lactuca sativa HOM05D004084 ORTHO05D004662 9.2e-64 247.7 252 57.5
PGR119G1682 Punica granatum HOM05D004084 ORTHO05D004662 9.2e-64 247.7 226 58.4
PGR123G0005 Punica granatum HOM05D004084 ORTHO05D004662 9.2e-64 247.7 226 58.4
COL.COLO4_35673 Corchorus olitorius HOM05D004084 ORTHO05D004662 1.6e-63 246.9 179 75.4
Migut.D00657 Erythranthe guttata HOM05D004084 ORTHO05D004662 2.7e-63 246.1 226 60.6
Thhalv10014482m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 4.5e-63 245.4 246 56.1
Sp6g31330 Schrenkiella parvula HOM05D004084 ORTHO05D004662 1.0e-62 244.2 243 56.0
ATR0680G173 Amborella trichopoda HOM05D004084 ORTHO05D004662 3.8e-62 242.3 223 56.5
Aa31LG3G14920 Aethionema arabicum HOM05D004084 ORTHO05D004662 5.0e-62 241.9 236 57.2
DCAR_023764 Daucus carota HOM05D000857 ORTHO05D004662 1.5e-61 240.4 180 69.4
PGR102G0788 Punica granatum HOM05D004084 ORTHO05D004662 4.3e-61 238.8 237 60.8
THA.LOC104824623 Tarenaya hassleriana HOM05D004084 ORTHO05D004662 2.1e-60 236.5 248 53.2
Carub.0006s1082 Capsella rubella HOM05D004084 ORTHO05D004662 2.3e-59 233.0 248 55.2
CARHR200800 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.1e-59 232.6 246 54.9
Lj6g0014777 Lotus japonicus HOM05D004084 ORTHO05D004662 4.0e-59 232.3 214 62.1
AT5G12310 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 8.9e-59 231.1 248 54.8
AT5G19430 Arabidopsis thaliana HOM05D004084 ORTHO05D004662 4.9e-57 225.3 233 54.1
unitig_8.g3650 Utricularia gibba HOM05D004084 ORTHO05D000654 4.9e-57 225.3 191 62.8
PSO384G1598 Papaver somniferum HOM05D004084 ORTHO05D004662 1.1e-56 224.2 233 53.6
SGA_v2.0_scaffold310G48197 Striga asiatica HOM05D004084 ORTHO05D004662 1.1e-56 224.2 216 58.3
Nn7g36697 Nelumbo nucifera HOM05D004084 ORTHO05D004662 1.4e-56 223.8 179 69.3
SGA_v2.0_scaffold8G04547 Striga asiatica HOM05D001938 ORTHO05D001965 7.0e-56 221.5 218 58.3
Sp6g24980 Schrenkiella parvula HOM05D004084 ORTHO05D004662 2.7e-55 219.5 258 50.0
Hund21983 Selenicereus undatus HOM05D004084 ORTHO05D004662 4.6e-55 218.8 194 59.8
HPP92_006725 Vanilla planifolia HOM05D004084 ORTHO05D004662 1.3e-54 217.2 171 67.3
arahy.Tifrunner.gnm1.ann1.6L2V6B Arachis hypogaea HOM05D004084 ORTHO05D004662 1.7e-54 216.9 211 62.1
Carub.0006s1777 Capsella rubella HOM05D004084 ORTHO05D004662 3.0e-54 216.1 243 51.9
Sabra09G0053400 Salix brachista HOM05D004084 ORTHO05D004662 3.3e-53 212.6 234 52.1
BolC3t13153H Brassica oleracea HOM05D004084 ORTHO05D004662 4.3e-53 212.2 189 55.0
BraA03t10266Z Brassica rapa HOM05D004084 ORTHO05D004662 9.5e-53 211.1 256 49.6
A03p09480 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-51 207.6 255 48.6
C03p11060 Brassica napus HOM05D004084 ORTHO05D004662 1.1e-51 207.6 252 48.8
BolC3t13575H Brassica oleracea HOM05D004084 ORTHO05D004662 1.1e-51 207.6 252 48.8
BcaB01g05145 Brassica carinata HOM05D004084 ORTHO05D004662 1.8e-51 206.8 252 48.8
A03p05580 Brassica napus HOM05D004084 ORTHO05D004662 1.8e-51 206.8 260 48.5
C03p06530 Brassica napus HOM05D004084 ORTHO05D004662 2.3e-51 206.5 261 45.6
BraA10t44615Z Brassica rapa HOM05D004084 ORTHO05D004662 2.3e-51 206.5 242 52.9
BolC9t59292H Brassica oleracea HOM05D004084 ORTHO05D004662 8.9e-51 204.5 243 52.3
C09p64590 Brassica napus HOM05D004084 ORTHO05D004662 2.0e-50 203.4 242 52.1
AL6G30920 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 1.3e-49 200.7 207 55.6
A10p25510 Brassica napus HOM05D004084 ORTHO05D004662 2.9e-49 199.5 244 51.6
Thhalv10014461m.g Eutrema salsugineum HOM05D004084 ORTHO05D004662 1.9e-48 196.8 255 45.5
BcaNung06777 Brassica carinata HOM05D004084 ORTHO05D004662 2.4e-48 196.4 189 54.0
SEGI_38021 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 3.2e-48 196.1 183 59.6
BraA03t09895Z Brassica rapa HOM05D004084 ORTHO05D004662 7.0e-48 194.9 190 53.2
SEGI_32483 Sequoiadendron giganteum HOM05D004084 ORTHO05D004662 1.2e-47 194.1 191 53.4
Pp3c26_14330 Physcomitrium patens HOM05D004084 ORTHO05D004662 6.0e-47 191.8 199 57.3
CARHR193510 Cardamine hirsuta HOM05D004084 ORTHO05D004662 3.6e-44 182.6 208 52.4
SMO337G0017 Selaginella moellendorffii HOM05D004084 ORTHO05D004662 8.1e-44 181.4 194 50.5
MD03G1166600 Malus domestica HOM05D004084 ORTHO05D004662 1.2e-42 177.6 141 70.2
CDE11G0877 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 2.6e-42 176.4 178 53.4
AagrBONN_evm.TU.Sc2ySwM_228.3727 Anthoceros agrestis HOM05D004084 ORTHO05D004662 7.5e-42 174.9 153 55.6
CSS0029213 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.3e-41 174.1 142 71.1
CBR_g131 Chara braunii HOM05D004084 ORTHO05D004662 2.2e-41 173.3 201 48.8
Oeu061709.1 Olea europaea HOM05D004084 ORTHO05D004662 2.8e-36 156.4 143 63.6
BcaB01g04862 Brassica carinata HOM05D004084 ORTHO05D004662 6.2e-36 155.2 255 40.4
Actinidia16378 Actinidia chinensis HOM05D004084 ORTHO05D004662 8.1e-36 154.8 100 69.0
CSS0040984 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 1.1e-35 154.5 143 69.9
Phvul.006G030800 Phaseolus vulgaris HOM05D004084 ORTHO05D004662 1.2e-34 151.0 133 63.2
CDE11G0903 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 3.8e-33 146.0 157 47.8
CDE11G0350 Ceratophyllum demersum HOM05D004084 ORTHO05D004662 1.9e-32 143.7 148 50.7
AUR62000187 Chenopodium quinoa HOM05D004084 ORTHO05D004662 2.4e-32 143.3 159 52.8
arahy.Tifrunner.gnm1.ann1.QA9X4A Arachis hypogaea HOM05D004084 ORTHO05D004662 3.2e-32 142.9 148 64.2
Cre13.g604750 Chlamydomonas reinhardtii HOM05D004084 ORTHO05D004662 1.0e-30 137.9 190 44.7
TPR.G27271 Trifolium pratense HOM05D004084 ORTHO05D004662 1.0e-30 137.9 132 60.6
Sabra16G0170200 Salix brachista HOM05D004084 ORTHO05D004662 1.3e-30 137.5 153 55.6
CSS0038115 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.1e-27 126.3 83 73.5
MD03G1166700 Malus domestica HOM05D004084 ORTHO05D004662 5.8e-26 122.1 62 82.3
Aqoxy2G00377 Aquilegia oxysepala HOM05D004084 ORTHO05D004662 1.3e-25 120.9 249 40.2
AL6G23110 Arabidopsis lyrata HOM05D004084 ORTHO05D004662 3.8e-25 119.4 152 55.9
Nn7g36696 Nelumbo nucifera HOM05D004084 ORTHO05D004662 3.8e-25 119.4 101 67.3
BcaB01g05406 Brassica carinata HOM05D004084 ORTHO05D004662 1.4e-24 117.5 260 36.9
EL10Ac8g18304 Beta vulgaris HOM05D004084 ORTHO05D004662 4.2e-24 115.9 103 50.5
SHI55208 Sapria himalayana HOM05D004084 ORTHO05D004662 1.2e-23 114.4 135 61.5
EL10Ac8g18303 Beta vulgaris HOM05D004084 ORTHO05D004662 3.9e-22 109.4 133 42.1
PRCOL_00000691 Prasinoderma coloniale HOM05D004084 ORTHO05D004662 8.7e-22 108.2 166 39.8
Cc00_g22040 Coffea canephora HOM05D004084 ORTHO05D004662 4.0e-19 99.4 96 52.1
AUR62006538 Chenopodium quinoa HOM05D001938 ORTHO05D001965 5.3e-19 99.0 97 60.8
arahy.Tifrunner.gnm1.ann1.57BBZ5 Arachis hypogaea HOM05D004084 ORTHO05D004662 7.6e-18 95.1 87 65.5
SalBow6G0813 Salvia bowleyana HOM05D004084 ORTHO05D004662 3.9e-14 82.8 106 49.1
Sed0017072 Sechium edule HOM05D004084 ORTHO05D004662 4.0e-11 72.8 123 39.8
Pp3c4_28300 Physcomitrium patens HOM05D004084 ORTHO05D004662 9.0e-11 71.6 48 64.6
MBI19_g25614_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D004662 6.4e-09 65.5 50 58.0
CSS0027788 Camellia sinensis var. sinensis HOM05D004084 ORTHO05D004662 3.5e-07 59.7 54 59.3
MBI14_g20318_MAGBIO Magnolia biondii HOM05D004084 ORTHO05D017722 3.0e-06 56.6 34 70.6
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 3.9e-06 56.2 59 42.4
COL.COLO4_35674 Corchorus olitorius HOM05D004084 ORTHO05D004662 6.7e-06 55.5 52 59.6


User provided reference genes

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