Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1194 Trochodendron aralioides HOM05D006823 ORTHO05D008608 8.9e-135 483.8 278 100.0
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.2e-78 297.4 251 69.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 3.5e-75 285.8 251 72.1
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 4.6e-75 285.4 253 69.2
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 3.9e-74 282.3 242 70.2
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 8.7e-74 281.2 245 68.2
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 4.3e-73 278.9 242 67.8
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.3e-73 278.9 241 70.5
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 5.7e-73 278.5 254 65.7
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.7e-73 277.7 243 70.0
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.7e-73 277.7 243 70.0
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 1.3e-72 277.3 245 67.3
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 2.8e-72 276.2 238 71.0
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 2.8e-72 276.2 248 69.0
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 4.8e-72 275.4 261 64.8
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 8.2e-72 274.6 260 66.5
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 6.9e-71 271.6 253 67.6
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 9.0e-71 271.2 242 68.6
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 2.0e-70 270.0 243 68.7
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 2.6e-70 269.6 258 67.8
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.4e-70 269.2 257 61.1
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 5.9e-70 268.5 238 66.0
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.8e-69 265.8 261 64.4
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 3.8e-69 265.8 234 70.9
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 6.5e-69 265.0 253 68.8
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 6.5e-69 265.0 246 68.3
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 6.5e-69 265.0 255 64.3
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 8.5e-69 264.6 236 66.1
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 1.9e-68 263.5 237 65.4
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 5.5e-68 261.9 253 62.8
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 7.2e-68 261.5 258 67.8
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.1e-67 260.0 245 66.9
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 2.1e-67 260.0 237 65.0
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 2.7e-67 259.6 249 66.7
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 3.6e-67 259.2 245 66.9
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 6.1e-67 258.5 236 65.3
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.4e-66 257.3 244 66.4
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 3.9e-66 255.8 236 67.8
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 3.9e-66 255.8 236 65.7
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 8.8e-66 254.6 242 66.1
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 1.1e-65 254.2 244 64.8
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 1.5e-65 253.8 282 56.7
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.5e-65 253.8 243 59.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 3.3e-65 252.7 254 61.8
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 4.3e-65 252.3 249 59.0
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 5.7e-65 251.9 246 65.4
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 7.4e-65 251.5 232 65.5
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 2.2e-64 250.0 242 69.8
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 4.8e-64 248.8 241 63.5
Haze_19965 Corylus avellana HOM05D006823 ORTHO05D008608 1.1e-63 247.7 227 69.2
arahy.Tifrunner.gnm1.ann1.R3LTDD Arachis hypogaea HOM05D006823 ORTHO05D008608 6.9e-63 245.0 229 65.9
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 1.2e-62 244.2 240 64.6
Lj2A371G33 Lonicera japonica HOM05D006823 ORTHO05D008608 1.3e-61 240.7 195 68.2
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 1.7e-61 240.4 239 59.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 2.9e-61 239.6 238 62.6
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 2.9e-61 239.6 239 62.8
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 5.0e-61 238.8 239 61.9
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 6.5e-61 238.4 239 62.3
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 1.4e-60 237.3 248 60.9
MELO3C009640.2 Cucumis melo HOM05D006823 ORTHO05D008608 1.4e-60 237.3 200 65.5
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.9e-60 236.9 257 60.3
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 7.2e-60 235.0 240 62.1
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 2.1e-59 233.4 241 57.3
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 7.9e-59 231.5 246 60.6
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 7.9e-59 231.5 233 58.4
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 1.0e-58 231.1 248 61.3
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 3.0e-58 229.6 238 61.3
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.0e-58 229.6 241 61.4
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.1e-58 228.8 200 66.0
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 6.7e-58 228.4 238 60.9
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 1.1e-57 227.6 247 61.5
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 2.0e-57 226.9 241 60.6
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 2.0e-57 226.9 241 60.6
Gohir.A09G127050 Gossypium hirsutum HOM05D006823 ORTHO05D008608 2.0e-57 226.9 196 65.3
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 7.4e-57 224.9 242 57.9
VMungo0720G1016 Vigna mungo HOM05D006823 ORTHO05D008608 9.7e-57 224.6 196 62.8
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 3.7e-56 222.6 236 58.9
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.7e-56 222.6 240 58.3
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 7.0e-55 218.4 240 57.5
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 7.0e-55 218.4 236 58.1
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 9.1e-55 218.0 256 55.1
CAN.G717.3 Capsicum annuum HOM05D006823 ORTHO05D008608 1.5e-54 217.2 245 57.1
AUR62012062 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.5e-54 215.7 237 53.6
Aqoxy1G00161 Aquilegia oxysepala HOM05D006823 ORTHO05D008608 8.5e-53 211.5 194 61.3
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 1.1e-52 211.1 240 59.2
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 7.2e-52 208.4 241 63.1
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 4.7e-51 205.7 242 56.2
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 8.0e-51 204.9 237 62.4
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 8.0e-51 204.9 238 55.9
arahy.Tifrunner.gnm1.ann1.HB0B2V Arachis hypogaea HOM05D006823 ORTHO05D008608 1.8e-50 203.8 192 60.9
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 2.3e-50 203.4 236 55.9
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 5.2e-50 202.2 179 70.4
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 3.7e-48 196.1 191 62.8
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 8.2e-48 194.9 238 53.8
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 3.8e-45 186.0 238 59.2
FvH4_6g22250 Fragaria vesca HOM05D006823 ORTHO05D008608 9.4e-44 181.4 168 61.9
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 9.4e-44 181.4 235 53.2
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 1.4e-42 177.6 241 47.3
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 4.0e-42 176.0 246 45.5
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.7e-35 152.5 151 62.3
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 4.7e-35 152.5 243 48.6
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.1e-31 139.4 139 56.1
AagrBONN_evm.TU.Sc2ySwM_369.80 Anthoceros agrestis HOM05D006823 ORTHO05D008608 7.0e-31 138.7 254 39.8
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 2.7e-30 136.7 241 37.8
arahy.Tifrunner.gnm1.ann1.WS1HM8 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-30 136.3 145 56.6
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 3.8e-29 132.9 245 37.1
CSS0004878 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.5e-28 130.2 109 66.1
CSS0021268 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 2.5e-28 130.2 109 66.1
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.0e-26 123.2 158 57.0
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 5.2e-26 122.5 257 40.1
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 2.7e-22 110.2 159 43.4
SMO145G0064 Selaginella moellendorffii HOM05D006823 ORTHO05D008608 1.7e-21 107.5 239 39.3
Zm00001eb092000 Zea mays HOM05D006823 ORTHO05D008608 8.6e-21 105.1 125 49.6
arahy.Tifrunner.gnm1.ann1.V1GDUY Arachis hypogaea HOM05D006823 ORTHO05D008608 2.6e-17 93.6 179 38.5
CBR_g4860 Chara braunii HOM05D006823 ORTHO05D008608 2.7e-14 83.6 199 32.7
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 3.5e-14 83.2 200 39.5
Zm00001eb385990 Zea mays HOM05D006823 ORTHO05D008608 5.6e-12 75.9 140 40.0
Zm00001eb116260 Zea mays HOM05D006823 ORTHO05D008608 1.1e-10 71.6 120 41.7
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 9.2e-07 58.5 52 50.0
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 1.6e-06 57.8 52 50.0
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 2.7e-06 57.0 57 49.1
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 3.5e-06 56.6 52 48.1
PGR042G2720 Punica granatum HOM05D005384 ORTHO05D006477 3.5e-06 56.6 52 48.1
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 4.6e-06 56.2 52 46.2
Nitab4.5_0009567g0040 Nicotiana tabacum HOM05D005384 ORTHO05D006477 6.0e-06 55.8 52 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1178 Anthoceros agrestis HOM05D005384 ORTHO05D006477 7.8e-06 55.5 55 43.6
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 7.8e-06 55.5 55 49.1
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 7.8e-06 55.5 55 49.1
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 7.8e-06 55.5 53 45.3
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 7.8e-06 55.5 53 45.3
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 7.8e-06 55.5 65 43.1


User provided reference genes

Program Settings