Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1191 Trochodendron aralioides HOM05D001952 ORTHO05D005047 1.0e-171 606.7 313 100.0
TAR633G1943 Trochodendron aralioides HOM05D001952 ORTHO05D005047 9.0e-152 540.4 313 87.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.6e-140 501.5 313 82.4
Nn2g10756 Nelumbo nucifera HOM05D001952 ORTHO05D005047 9.7e-138 493.8 313 81.2
GSVIVG01016297001 Vitis vinifera HOM05D001952 ORTHO05D005047 1.8e-136 489.6 313 79.9
CSS0043642 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 3.1e-136 488.8 313 80.8
Dinv11786 Davidia involucrata HOM05D001952 ORTHO05D007415 2.6e-135 485.7 303 82.2
Aqoxy7G02906 Aquilegia oxysepala HOM05D001952 ORTHO05D005047 6.5e-134 481.1 313 78.3
Actinidia38268 Actinidia chinensis HOM05D001952 ORTHO05D005047 9.4e-133 477.2 313 78.9
RcHm_v2.0_Chr1g0363681 Rosa chinensis HOM05D001952 ORTHO05D005047 1.2e-132 476.9 313 77.0
TWI38G1551 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 2.1e-132 476.1 313 77.3
Hma1.2p1_0063F.1_g034440 Hydrangea macrophylla HOM05D001952 ORTHO05D005047 2.7e-132 475.7 306 80.4
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 4.6e-132 474.9 294 80.6
CiPaw.01G274000 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.0e-131 473.8 313 77.0
TWI15G0762 Tripterygium wilfordii HOM05D001952 ORTHO05D005047 5.1e-131 471.5 313 76.4
QL08p056315 Quercus lobata HOM05D001952 ORTHO05D005047 6.7e-131 471.1 312 76.0
FAN10G0547 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.8e-129 465.7 313 75.1
Potri.010G220900 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.8e-129 465.7 313 76.4
FAN03G1754 Fragaria x ananassa HOM05D001952 ORTHO05D005047 4.8e-129 464.9 313 74.8
Lj1C916T4 Lonicera japonica HOM05D001952 ORTHO05D005047 1.1e-128 463.8 313 75.4
Rhsim03G0124200 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.1e-128 463.8 305 77.7
Rhsim09G0040900 Rhododendron simsii HOM05D001952 ORTHO05D005047 1.4e-128 463.4 305 77.4
FvH4_7g19770 Fragaria vesca HOM05D001952 ORTHO05D005047 4.1e-128 461.8 313 74.4
MBI07_g41454_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 6.9e-128 461.1 311 76.5
Manes.07G104300 Manihot esculenta HOM05D001952 ORTHO05D005047 9.1e-128 460.7 313 74.8
Actinidia03051 Actinidia chinensis HOM05D001952 ORTHO05D005047 2.6e-127 459.1 305 78.0
CSS0010121 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 5.9e-127 458.0 307 77.9
Sc20g0001940 Simmondsia chinensis HOM05D001952 ORTHO05D005047 5.9e-127 458.0 313 73.5
FAN01G0922 Fragaria x ananassa HOM05D001952 ORTHO05D005047 7.7e-127 457.6 307 74.9
Duzib106G0378 Durio zibethinus HOM05D001952 ORTHO05D005047 3.8e-126 455.3 294 76.9
Prupe.8G142500 Prunus persica HOM05D001952 ORTHO05D005047 5.0e-126 454.9 313 73.8
Gohir.A10G207000 Gossypium hirsutum HOM05D001952 ORTHO05D005047 1.9e-125 453.0 305 75.1
Ciclev10032201m.g Citrus clementina HOM05D001952 ORTHO05D005047 3.2e-125 452.2 308 75.3
Gohir.D10G215100 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.2e-125 452.2 305 75.1
Gorai.011G240600 Gossypium raimondii HOM05D001952 ORTHO05D005047 7.2e-125 451.1 294 76.5
MD07G1176100 Malus domestica HOM05D001952 ORTHO05D005047 9.4e-125 450.7 313 72.8
Hund12040 Selenicereus undatus HOM05D001952 ORTHO05D005047 9.4e-125 450.7 307 74.6
Thecc.10G071300 Theobroma cacao HOM05D001952 ORTHO05D005047 1.2e-124 450.3 301 74.8
MELO3C002900.2 Cucumis melo HOM05D001952 ORTHO05D005047 4.7e-124 448.4 313 71.6
vmacro07078 Vaccinium macrocarpon HOM05D001952 ORTHO05D005047 6.1e-124 448.0 313 75.1
MSTRG.27460 Avicennia marina HOM05D001952 ORTHO05D005047 7.9e-124 447.6 305 75.4
CsaV3_5G025750 Cucumis sativus L. HOM05D001952 ORTHO05D005047 7.9e-124 447.6 313 70.9
THA.LOC104809877 Tarenaya hassleriana HOM05D001952 ORTHO05D005047 1.0e-123 447.2 305 73.4
AUR62036746 Chenopodium quinoa HOM05D001952 ORTHO05D005047 1.8e-123 446.4 313 72.5
PSO339G2303 Papaver somniferum HOM05D001952 ORTHO05D005047 1.8e-123 446.4 316 71.8
Potri.008G041100 Populus trichocarpa HOM05D001952 ORTHO05D005047 2.3e-123 446.0 313 75.4
Gohir.D04G003200 Gossypium hirsutum HOM05D001952 ORTHO05D005047 5.1e-123 444.9 305 73.1
Gorai.012G004300 Gossypium raimondii HOM05D001952 ORTHO05D005047 5.1e-123 444.9 305 73.1
Atru.chr12.731 Acer truncatum HOM05D001952 ORTHO05D005047 6.7e-123 444.5 314 73.9
ATR0115G026 Amborella trichopoda HOM05D001952 ORTHO05D005047 8.8e-123 444.1 298 74.8
Lalb_Chr01g0010101 Lupinus albus HOM05D001952 ORTHO05D005047 8.8e-123 444.1 313 72.2
CANSAT56G1702 Cannabis sativa HOM05D001952 ORTHO05D005047 1.5e-122 443.4 302 72.8
VMungo0464G0347 Vigna mungo HOM05D001952 ORTHO05D005047 1.5e-122 443.4 313 72.2
Ah.11g040520 Amaranthus hybridus HOM05D001952 ORTHO05D005047 5.7e-122 441.4 305 72.5
Sopen04g018690 Solanum pennellii HOM05D001952 ORTHO05D005047 7.4e-122 441.0 304 73.4
Phvul.004G071600 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 9.7e-122 440.7 313 71.9
EL10Ac1g02054 Beta vulgaris HOM05D001952 ORTHO05D005047 2.8e-121 439.1 348 66.1
PSO063G6730 Papaver somniferum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 316 71.5
PGR044G1956 Punica granatum HOM05D001952 ORTHO05D005047 2.8e-121 439.1 302 71.2
Sed0013357 Sechium edule HOM05D001952 ORTHO05D005047 3.7e-121 438.7 313 69.6
Solyc04g049180.3 Solanum lycopersicum HOM05D001952 ORTHO05D005047 3.7e-121 438.7 304 73.0
Gohir.A05G412900 Gossypium hirsutum HOM05D001952 ORTHO05D005047 4.8e-121 438.3 305 72.1
CAN.G4.5 Capsicum annuum HOM05D001952 ORTHO05D005047 6.3e-121 438.0 304 73.0
Peaxi162Scf00272g00023 Petunia axillaris HOM05D001952 ORTHO05D005047 1.1e-120 437.2 301 73.1
SalBow3G3659 Salvia bowleyana HOM05D001952 ORTHO05D005047 1.4e-120 436.8 315 72.1
SGA_v2.0_scaffold341G49359 Striga asiatica HOM05D001952 ORTHO05D005047 1.8e-120 436.4 315 69.5
Sabra10G0170600 Salix brachista HOM05D001952 ORTHO05D005047 2.4e-120 436.0 348 68.1
DCAR_006448 Daucus carota HOM05D001952 ORTHO05D005047 1.2e-119 433.7 350 66.6
MSTRG.8150 Avicennia marina HOM05D001952 ORTHO05D005047 1.0e-118 430.6 300 72.0
Sabra08G0027900 Salix brachista HOM05D001952 ORTHO05D005047 1.7e-118 429.9 344 68.6
HanXRQChr09g0246441 Helianthus annuus HOM05D001952 ORTHO05D005047 3.8e-118 428.7 315 70.8
Psat6g185440 Pisum sativum HOM05D001952 ORTHO05D005047 3.8e-118 428.7 300 71.3
Cpa.g.sc53.62 Carica papaya HOM05D001952 ORTHO05D005047 8.5e-118 427.6 301 73.1
Lj2g0017031 Lotus japonicus HOM05D001952 ORTHO05D005047 1.1e-117 427.2 305 70.8
Aa31LG5G18490 Aethionema arabicum HOM05D001952 ORTHO05D005047 1.9e-117 426.4 305 70.5
Lsat_1_v5_gn_9_68641 Lactuca sativa HOM05D001952 ORTHO05D005047 2.5e-117 426.0 318 71.1
TPR.G1807 Trifolium pratense HOM05D001952 ORTHO05D005047 2.5e-117 426.0 295 71.5
Glyma.16G145700 Glycine max HOM05D001952 ORTHO05D005047 5.5e-117 424.9 313 70.3
Glyma.02G064500 Glycine max HOM05D001952 ORTHO05D005047 7.2e-117 424.5 313 70.0
Phvul.007G093800 Phaseolus vulgaris HOM05D001952 ORTHO05D005047 7.2e-117 424.5 301 71.8
Eucgr.J01098 Eucalyptus grandis HOM05D001952 ORTHO05D005047 9.4e-117 424.1 309 68.9
Medtr1g095490 Medicago truncatula HOM05D001952 ORTHO05D005047 1.2e-116 423.7 290 72.8
PSO384G3798 Papaver somniferum HOM05D001952 ORTHO05D005047 1.6e-116 423.3 315 68.6
ECA232G3999 Erigeron canadensis HOM05D001952 ORTHO05D005047 2.1e-116 422.9 309 70.6
C05p59390 Brassica napus HOM05D001952 ORTHO05D005047 6.1e-116 421.4 305 70.8
Nitab4.5_0001352g0010 Nicotiana tabacum HOM05D001952 ORTHO05D005047 6.1e-116 421.4 305 71.1
Sp3g06860 Schrenkiella parvula HOM05D001952 ORTHO05D005047 1.4e-115 420.2 295 71.9
COL.COLO4_23705 Corchorus olitorius HOM05D001952 ORTHO05D005047 1.8e-115 419.9 386 59.1
TPR.G36683 Trifolium pratense HOM05D001952 ORTHO05D005047 2.3e-115 419.5 290 71.7
ClCG09G020640 Citrullus lanatus HOM05D001952 ORTHO05D005047 3.0e-115 419.1 361 61.5
BcaB03g11556 Brassica carinata HOM05D000484 ORTHO05D005047 3.9e-115 418.7 302 70.5
Glyma.10G212100 Glycine max HOM05D001952 ORTHO05D005047 3.9e-115 418.7 278 74.1
AL3G19330 Arabidopsis lyrata HOM05D001952 ORTHO05D005047 5.2e-115 418.3 305 70.2
BcaC09g47964 Brassica carinata HOM05D001952 ORTHO05D005047 1.1e-114 417.2 306 70.6
Lj5g0021726 Lotus japonicus HOM05D001952 ORTHO05D005047 1.1e-114 417.2 296 69.9
Duzib114G0604 Durio zibethinus HOM05D001952 ORTHO05D005047 1.5e-114 416.8 270 76.3
BcaC05g29583 Brassica carinata HOM05D001952 ORTHO05D005047 2.0e-114 416.4 305 70.2
Nitab4.5_0000233g0070 Nicotiana tabacum HOM05D001952 ORTHO05D005047 2.0e-114 416.4 302 70.5
Carub.0003s0752 Capsella rubella HOM05D001952 ORTHO05D005047 2.6e-114 416.0 305 69.2
A05p40310 Brassica napus HOM05D001952 ORTHO05D005047 4.4e-114 415.2 312 68.6
AT3G07950 Arabidopsis thaliana HOM05D001952 ORTHO05D005047 7.4e-114 414.5 295 70.5
BolC5t34594H Brassica oleracea HOM05D001952 ORTHO05D005047 7.4e-114 414.5 301 70.4
BolC1t05516H Brassica oleracea HOM05D001952 ORTHO05D005047 1.7e-113 413.3 301 70.8
arahy.Tifrunner.gnm1.ann1.BF0W30 Arachis hypogaea HOM05D001952 ORTHO05D005047 2.8e-113 412.5 291 70.8
HPP92_014675 Vanilla planifolia HOM05D001952 ORTHO05D005047 2.8e-113 412.5 312 65.4
CARHR082690 Cardamine hirsuta HOM05D001952 ORTHO05D005047 3.7e-113 412.1 305 69.2
arahy.Tifrunner.gnm1.ann1.GFW5PY Arachis hypogaea HOM05D001952 ORTHO05D005047 4.8e-113 411.8 291 70.8
PSO339G4598 Papaver somniferum HOM05D001952 ORTHO05D005047 4.8e-113 411.8 315 66.3
BcaB04g21262 Brassica carinata HOM05D001952 ORTHO05D005047 8.2e-113 411.0 306 69.3
CSS0012304 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D005047 1.1e-112 410.6 263 80.2
AUR62013854 Chenopodium quinoa HOM05D001952 ORTHO05D005047 2.4e-112 409.5 278 71.9
arahy.Tifrunner.gnm1.ann1.I356LV Arachis hypogaea HOM05D001952 ORTHO05D005047 5.3e-112 408.3 313 66.8
Migut.F02000 Erythranthe guttata HOM05D001952 ORTHO05D005047 5.3e-112 408.3 314 68.8
Thhalv10021192m.g Eutrema salsugineum HOM05D001952 ORTHO05D005047 5.3e-112 408.3 310 68.7
Gorai.013G026100 Gossypium raimondii HOM05D001952 ORTHO05D005047 9.1e-112 407.5 294 69.7
CDE10G0691 Ceratophyllum demersum HOM05D001952 ORTHO05D005047 1.2e-111 407.1 313 64.9
CiPaw.02G174800 Carya illinoinensis HOM05D001952 ORTHO05D005047 1.0e-110 404.1 277 74.7
Gohir.D13G023300 Gossypium hirsutum HOM05D001952 ORTHO05D005047 2.2e-110 402.9 294 69.7
SEGI_02403 Sequoiadendron giganteum HOM05D001952 ORTHO05D005047 3.8e-110 402.1 305 63.9
Dinv31333 Davidia involucrata HOM05D001952 ORTHO05D005047 1.5e-109 400.2 310 69.7
Oeu043934.2 Olea europaea HOM05D001952 ORTHO05D005047 3.2e-109 399.1 269 73.2
Lsat_1_v5_gn_8_19940 Lactuca sativa HOM05D001952 ORTHO05D005047 8.0e-108 394.4 314 67.2
FAN06G0112 Fragaria x ananassa HOM05D001952 ORTHO05D005047 2.0e-106 389.8 261 73.9
unitig_0.g2136 Utricularia gibba HOM05D001952 ORTHO05D005047 4.8e-105 385.2 304 65.5
Os03g0358200 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 9.1e-104 380.9 292 67.5
Os07g0655400 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 1.6e-103 380.2 302 65.6
Zm00001eb110580 Zea mays HOM05D001952 ORTHO05D005047 1.9e-101 373.2 307 62.9
Cc09_g01990 Coffea canephora HOM05D001952 ORTHO05D005047 1.4e-96 357.1 247 73.7
Zm00001eb394380 Zea mays HOM05D001952 ORTHO05D005047 7.7e-95 351.3 277 63.5
ATR0559G188 Amborella trichopoda HOM05D001952 ORTHO05D005047 2.7e-87 326.2 277 57.4
Mapoly0066s0031 Marchantia polymorpha HOM05D001952 ORTHO05D005047 6.6e-86 321.6 309 51.5
Gohir.A13G024400 Gossypium hirsutum HOM05D001952 ORTHO05D005047 3.3e-85 319.3 222 73.9
AagrBONN_evm.TU.Sc2ySwM_344.4977 Anthoceros agrestis HOM05D001952 ORTHO05D005047 9.5e-85 317.8 290 56.6
Os04g0103300 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D005047 8.3e-81 304.7 277 55.6
Pp3c16_4780 Physcomitrium patens HOM05D001952 ORTHO05D005047 9.2e-80 301.2 311 51.8
Pp3c27_5280 Physcomitrium patens HOM05D001952 ORTHO05D005047 9.2e-80 301.2 309 52.8
SHI07338 Sapria himalayana HOM05D001952 ORTHO05D005047 9.2e-80 301.2 277 58.8
Zm00001eb089590 Zea mays HOM05D001952 ORTHO05D005047 1.5e-77 293.9 277 52.3
SMO140G0041 Selaginella moellendorffii HOM05D001952 ORTHO05D005047 3.3e-77 292.7 276 54.0
Zm00001eb418910 Zea mays HOM05D001952 ORTHO05D005047 3.3e-77 292.7 277 52.0
unitig_736.g22520 Utricularia gibba HOM05D001952 ORTHO05D005047 5.6e-77 292.0 283 55.1
SalBow4G0807 Salvia bowleyana HOM05D001952 ORTHO05D005047 7.5e-74 281.6 303 53.5
Zm00001eb017450 Zea mays HOM05D001952 ORTHO05D005047 9.8e-74 281.2 218 64.2
MBI17_g17186_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.9e-73 278.9 329 53.8
Nn2g10413 Nelumbo nucifera HOM05D001952 ORTHO05D005047 8.6e-70 268.1 226 59.3
arahy.Tifrunner.gnm1.ann1.1JAQ89 Arachis hypogaea HOM05D001952 ORTHO05D005047 3.1e-67 259.6 207 63.3
Lalb_Chr19g0129631 Lupinus albus HOM05D001952 ORTHO05D005047 6.2e-60 235.3 196 62.2
CBR_g52157 Chara braunii HOM05D001952 ORTHO05D005047 4.9e-57 225.7 210 51.0
ECA233G5952 Erigeron canadensis HOM05D001952 ORTHO05D005047 8.4e-57 224.9 181 63.0
TAR633G1124 Trochodendron aralioides HOM05D002354 ORTHO05D002469 8.4e-57 224.9 222 52.7
arahy.Tifrunner.gnm1.ann1.RZKK0D Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-56 223.8 195 59.0
Oeu052143.1 Olea europaea HOM05D001952 ORTHO05D005047 6.0e-55 218.8 150 72.7
Cre17.g706850 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D005047 4.7e-52 209.1 287 38.3
MD01G1110300 Malus domestica HOM05D001952 ORTHO05D005047 1.7e-49 200.7 150 66.7
unitig_747.g21458 Utricularia gibba HOM05D001952 ORTHO05D005047 2.2e-49 200.3 166 62.7
Migut.F01769 Erythranthe guttata HOM05D001952 ORTHO05D005047 1.5e-45 187.6 152 61.8
MCO03G295 Micromonas commoda HOM05D001952 ORTHO05D005047 9.0e-35 151.8 278 30.9
MCO07G038 Micromonas commoda HOM05D001952 ORTHO05D005047 1.7e-33 147.5 316 30.1
arahy.Tifrunner.gnm1.ann1.1BY4XL Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-29 134.0 105 67.6
Nn1g06899 Nelumbo nucifera HOM05D001952 ORTHO05D005047 4.5e-26 122.9 76 82.9
Ca_12760_v3 Cicer arietinum L. HOM05D001952 ORTHO05D005047 1.4e-24 117.9 115 54.8
PRCOL_00004972 Prasinoderma coloniale HOM05D001952 ORTHO05D005047 7.1e-24 115.5 210 31.9
Cfa025342 Carpinus fangiana HOM05D001952 ORTHO05D005047 4.6e-23 112.8 318 31.1
arahy.Tifrunner.gnm1.ann1.PMPU7Y Arachis hypogaea HOM05D001952 ORTHO05D005047 1.9e-21 107.5 134 50.7
PRCOL_00006255 Prasinoderma coloniale HOM05D000177 ORTHO05D002683 1.6e-20 104.4 272 29.0
MBI19_g20119_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D005047 4.6e-15 86.3 187 38.0
CBR_g52155 Chara braunii HOM05D001952 ORTHO05D134355 4.5e-10 69.7 59 54.2
unitig_747.g21459 Utricularia gibba HOM05D001952 ORTHO05D005047 2.5e-08 63.9 39 71.8


User provided reference genes

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