Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.7e-143 512.7 269 100.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 2.5e-102 375.9 233 85.8
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 8.1e-93 344.4 234 77.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 2.0e-91 339.7 234 76.1
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.4e-90 334.7 247 76.9
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 3.9e-87 325.5 241 73.4
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 7.4e-86 321.2 237 71.3
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.3e-85 320.5 239 73.6
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 8.1e-85 317.8 235 73.2
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 2.4e-84 316.2 234 73.9
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 4.0e-84 315.5 246 68.3
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 6.9e-84 314.7 234 74.4
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 2.6e-83 312.8 238 69.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.9e-82 309.3 224 72.8
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 3.8e-82 308.9 231 70.6
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 8.4e-82 307.8 230 70.4
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 8.4e-82 307.8 233 71.2
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 2.5e-81 306.2 241 69.7
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 9.3e-81 304.3 237 67.9
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 2.7e-80 302.8 237 67.9
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 2.7e-80 302.8 231 69.3
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 3.5e-80 302.4 273 63.0
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.0e-79 300.8 237 68.8
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 3.9e-79 298.9 228 71.1
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.1e-78 297.4 242 66.9
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.3e-78 295.8 235 68.1
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 7.4e-78 294.7 243 66.3
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 9.6e-78 294.3 237 65.8
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 1.6e-77 293.5 231 69.7
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.8e-77 292.7 268 61.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.7e-77 292.4 254 65.4
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 4.8e-77 292.0 248 63.7
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 6.3e-77 291.6 235 66.4
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 6.3e-77 291.6 237 69.6
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 8.2e-77 291.2 238 68.1
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 8.2e-77 291.2 234 67.5
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 1.1e-76 290.8 198 73.7
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.4e-76 290.4 237 67.1
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 1.4e-76 290.4 211 72.5
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.8e-76 290.0 244 67.6
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.4e-76 289.7 239 65.7
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.4e-76 289.7 239 65.7
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 3.1e-76 289.3 232 69.8
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 4.1e-76 288.9 235 67.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 4.1e-76 288.9 238 66.8
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 4.1e-76 288.9 203 72.9
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 5.3e-76 288.5 239 64.9
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 9.0e-76 287.7 239 64.9
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 9.0e-76 287.7 220 70.5
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.0e-75 286.6 220 70.0
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 7.6e-75 284.6 240 65.8
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 1.0e-74 284.3 239 64.4
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-74 283.5 233 66.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 2.2e-74 283.1 193 75.6
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 2.9e-74 282.7 237 65.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 2.9e-74 282.7 235 66.4
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 3.8e-74 282.3 235 67.7
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 5.0e-74 282.0 240 63.8
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 1.4e-73 280.4 242 65.7
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 3.2e-73 279.3 239 64.9
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 4.2e-73 278.9 201 70.6
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.5e-73 278.5 237 61.6
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.5e-73 278.5 239 64.0
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 9.3e-73 277.7 241 62.2
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 9.3e-73 277.7 207 69.6
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.2e-72 277.3 239 63.6
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 1.6e-72 276.9 229 64.6
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 1.6e-72 276.9 257 60.3
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 2.1e-72 276.6 230 64.8
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 2.7e-72 276.2 241 65.1
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 3.6e-72 275.8 235 63.8
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 6.1e-72 275.0 242 64.0
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.3e-71 273.1 249 61.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 3.0e-71 272.7 242 63.2
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.0e-71 272.7 237 64.6
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 3.0e-71 272.7 242 63.2
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 3.9e-71 272.3 233 64.8
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 5.1e-71 271.9 204 73.5
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.5e-70 270.4 241 63.5
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 2.5e-70 269.6 236 62.3
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 3.3e-70 269.2 242 63.2
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 7.4e-70 268.1 244 63.9
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 7.4e-70 268.1 244 63.9
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 7.4e-70 268.1 239 61.5
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 7.4e-70 268.1 189 74.1
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 1.3e-69 267.3 201 68.2
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.8e-69 266.2 242 64.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 3.7e-69 265.8 236 61.9
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 6.3e-69 265.0 234 63.7
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.1e-68 264.2 242 63.6
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-68 264.2 231 61.5
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 1.4e-68 263.8 248 64.1
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.8e-68 263.5 230 61.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 3.1e-68 262.7 237 62.9
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 3.1e-68 262.7 236 59.7
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.2e-67 260.8 206 68.0
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.0e-66 257.7 263 59.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.3e-66 257.3 192 70.3
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 5.5e-65 251.9 234 65.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 7.2e-65 251.5 232 63.4
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.2e-64 250.8 232 59.9
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.1e-64 250.0 202 67.3
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.1e-64 248.4 202 66.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.0e-63 247.7 199 66.8
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.8e-63 246.9 240 58.3
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.8e-63 246.9 202 66.8
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 5.1e-63 245.4 199 65.8
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 8.8e-63 244.6 229 59.0
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.5e-62 243.8 242 61.6
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 7.4e-62 241.5 234 59.8
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.8e-61 239.6 241 56.4
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 6.3e-61 238.4 242 60.3
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 6.3e-61 238.4 242 60.3
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 8.2e-61 238.0 243 58.4
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.6e-59 233.0 228 58.3
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.3e-58 230.7 200 63.0
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 3.8e-58 229.2 227 56.8
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 2.5e-57 226.5 194 62.9
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.2e-57 225.7 265 52.8
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.7e-56 223.0 261 52.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.7e-56 223.0 227 55.1
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 2.7e-56 223.0 197 60.4
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.4e-55 220.7 265 50.9
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 6.7e-55 218.4 198 59.6
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 6.7e-55 218.4 265 52.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.1e-54 217.6 172 68.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-54 217.2 298 49.7
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.5e-54 217.2 298 49.7
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.4e-54 215.7 236 52.1
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.7e-53 213.8 162 69.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.9e-50 203.0 147 72.8
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 6.1e-48 195.3 197 55.8
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.3e-46 189.5 173 60.7
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.4e-44 184.1 183 57.9
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.5e-43 179.5 188 52.7
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 5.9e-43 178.7 200 50.5
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.3e-42 177.6 128 71.9
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.9e-42 176.4 194 52.1
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.7e-40 169.9 216 46.3
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 6.1e-40 168.7 229 41.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 8.8e-39 164.9 206 47.6
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.8e-37 159.1 194 48.5
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.5e-35 152.5 96 82.3
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 5.9e-35 152.1 195 47.2
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.0e-34 151.4 114 70.2
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.7e-34 150.6 196 47.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 7.2e-33 145.2 114 65.8
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 6.1e-32 142.1 95 81.1
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.4e-28 130.2 200 42.0
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 2.1e-24 117.1 109 59.6
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.0e-23 113.2 93 60.2
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 3.5e-19 99.8 109 51.4
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 8.6e-18 95.1 83 62.7
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.9e-17 94.0 83 62.7
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 5.2e-15 85.9 107 42.1
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.2e-13 80.5 146 43.2
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.5e-11 73.2 139 41.7
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 1.1e-07 61.6 115 35.7
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 4.0e-07 59.7 63 57.1
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 5.2e-07 59.3 83 43.4


User provided reference genes

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