Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 4.5e-121 438.0 222 100.0
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 4.8e-75 285.0 223 69.1
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 6.8e-69 264.6 223 65.5
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.0e-65 253.1 225 61.8
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 2.7e-65 252.7 215 61.9
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.0e-64 250.8 226 61.9
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 2.9e-64 249.2 221 62.4
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 2.0e-60 236.5 220 59.5
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 4.4e-60 235.3 219 58.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 1.8e-58 229.9 232 58.6
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 2.4e-58 229.6 229 59.4
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 4.1e-58 228.8 201 62.7
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 1.2e-57 227.3 218 58.7
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 3.5e-57 225.7 200 62.0
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 3.5e-57 225.7 227 57.3
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 5.9e-57 224.9 188 64.4
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 7.7e-57 224.6 216 57.9
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.7e-56 223.4 216 57.4
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 8.6e-56 221.1 220 57.7
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 8.6e-56 221.1 220 57.7
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.5e-55 220.3 228 57.5
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 1.5e-55 220.3 155 71.0
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 3.3e-55 219.2 221 57.9
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 7.3e-55 218.0 230 53.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.2e-54 217.2 170 64.7
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.2e-54 217.2 222 58.1
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 1.6e-54 216.9 204 60.8
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.6e-54 216.9 220 54.5
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.1e-54 216.5 222 56.3
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.1e-54 216.5 220 57.7
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 3.6e-54 215.7 228 53.5
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 8.0e-54 214.5 166 66.3
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 8.0e-54 214.5 199 59.3
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.0e-52 209.9 159 65.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.0e-52 209.9 173 61.3
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.3e-51 207.2 200 57.0
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 4.9e-51 205.3 155 67.1
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 6.4e-51 204.9 209 56.9
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 8.3e-51 204.5 186 58.6
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 3.2e-50 202.6 237 50.2
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.6e-49 200.3 189 58.2
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 4.6e-49 198.7 196 56.6
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 7.8e-49 198.0 226 51.3
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 3.9e-48 195.7 146 69.9
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 5.0e-48 195.3 191 56.0
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 7.3e-47 191.4 201 52.2
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 2.8e-46 189.5 219 51.6
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 6.2e-46 188.3 218 50.9
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 6.2e-46 188.3 197 53.8
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.8e-45 186.8 211 52.1
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.8e-45 186.8 183 54.1
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 1.2e-44 184.1 137 68.6
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 2.0e-44 183.3 231 48.9
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 4.4e-44 182.2 219 49.8
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 5.8e-44 181.8 211 49.8
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 5.8e-44 181.8 170 58.2
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 5.8e-44 181.8 170 58.2
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 5.8e-44 181.8 121 72.7
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 7.5e-44 181.4 147 66.0
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.1e-42 177.6 188 55.9
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.4e-42 177.2 200 51.5
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 1.9e-42 176.8 136 67.6
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 7.0e-42 174.9 201 49.3
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 2.7e-41 172.9 232 47.4
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 4.6e-41 172.2 217 45.6
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 1.0e-40 171.0 170 54.1
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 2.3e-40 169.9 210 45.7
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 2.3e-40 169.9 210 46.2
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 2.3e-40 169.9 191 48.7
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 2.3e-40 169.9 191 48.7
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 3.9e-40 169.1 213 48.4
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.5e-39 167.2 210 44.8
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.5e-39 166.4 180 51.7
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 2.5e-39 166.4 133 63.9
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 3.3e-39 166.0 130 64.6
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 4.3e-39 165.6 137 59.1
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 9.5e-39 164.5 165 55.2
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.2e-38 164.1 149 55.7
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 2.1e-38 163.3 139 61.2
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 2.1e-38 163.3 139 61.2
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 2.1e-38 163.3 174 52.9
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 2.8e-38 162.9 165 53.3
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 3.6e-38 162.5 112 64.3
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 3.6e-38 162.5 159 54.7
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 4.7e-38 162.2 149 58.4
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.4e-37 160.6 195 49.2
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.4e-37 160.6 224 47.8
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 2.3e-37 159.8 124 62.9
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 4.0e-37 159.1 145 55.9
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 9.8e-36 154.5 176 48.3
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.3e-35 154.1 119 58.8
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.2e-35 153.3 153 51.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 6.4e-35 151.8 154 55.2
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.1e-34 149.1 137 55.5
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 6.6e-32 141.7 185 46.5
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.1e-31 141.0 185 46.5
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 5.6e-31 138.7 136 49.3
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 1.6e-30 137.1 288 39.2
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.6e-30 136.0 236 39.4
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 3.1e-29 132.9 205 42.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 5.2e-29 132.1 179 46.4
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.0e-24 117.9 147 49.0
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 6.6e-24 115.2 156 45.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 5.6e-23 112.1 126 52.4
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.4e-21 107.5 194 37.6
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 6.9e-21 105.1 73 67.1
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 5.1e-16 89.0 114 41.2
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 2.1e-14 83.6 108 41.7
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 8.1e-14 81.6 56 73.2
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 1.1e-10 71.2 112 35.7
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.0e-08 64.7 117 34.2
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.8e-08 63.9 117 33.3
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 6.7e-08 62.0 117 35.9
SalBow1G5413 Salvia bowleyana HOM05D002878 ORTHO05D003649 6.7e-08 62.0 129 32.6
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 6.7e-08 62.0 129 32.6
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 1.1e-07 61.2 131 33.6
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 1.1e-07 61.2 129 31.8
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.5e-07 60.8 117 33.3
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 1.9e-07 60.5 129 31.8
Nn5g30293 Nelumbo nucifera HOM05D002878 ORTHO05D003649 1.6e-06 57.4 98 36.7
Ca_22162_v3 Cicer arietinum L. HOM05D002878 ORTHO05D003649 2.1e-06 57.0 130 32.3
HanXRQChr12g0378831 Helianthus annuus HOM05D002878 ORTHO05D003649 2.1e-06 57.0 113 34.5
Potri.005G138400 Populus trichocarpa HOM05D002878 ORTHO05D003649 3.6e-06 56.2 133 35.3
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 3.6e-06 56.2 129 32.6
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 4.8e-06 55.8 71 40.8
MSTRG.23744 Avicennia marina HOM05D002878 ORTHO05D003649 4.8e-06 55.8 116 32.8
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 4.8e-06 55.8 135 30.4
Rhsim10G0117200 Rhododendron simsii HOM05D002878 ORTHO05D003649 4.8e-06 55.8 91 37.4
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 6.2e-06 55.5 134 33.6
Cre07.g316600 Chlamydomonas reinhardtii HOM05D004286 ORTHO05D004632 6.2e-06 55.5 87 35.6
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 6.2e-06 55.5 90 31.1
arahy.Tifrunner.gnm1.ann1.H1IQ00 Arachis hypogaea HOM05D002878 ORTHO05D003649 8.1e-06 55.1 130 33.1
Lsat_1_v5_gn_3_90761 Lactuca sativa HOM05D002878 ORTHO05D003649 8.1e-06 55.1 130 30.0


User provided reference genes

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