Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 0.0e+00 1143.3 592 100.0
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 0.0e+00 1076.6 593 94.1
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 8.4e-300 1033.1 597 90.5
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 6.9e-294 1013.4 593 86.5
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 2.6e-293 1011.5 593 86.5
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 6.4e-292 1006.9 593 86.7
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 8.4e-292 1006.5 593 87.5
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 7.8e-290 1000.0 598 86.0
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 3.9e-289 997.7 585 87.0
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 7.3e-288 993.4 596 85.6
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 9.6e-288 993.0 594 84.8
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 6.2e-287 990.3 595 85.7
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.8e-286 988.8 594 85.5
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 3.1e-286 988.0 598 85.6
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 2.0e-285 985.3 593 85.2
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 2.6e-285 984.9 595 83.2
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 7.6e-285 983.4 594 84.3
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 2.9e-284 981.5 594 84.7
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 4.9e-284 980.7 598 84.3
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.9e-284 980.7 596 84.4
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.9e-283 978.8 595 83.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 3.2e-283 978.0 592 84.0
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 5.4e-283 977.2 595 84.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 3.9e-281 971.1 595 83.4
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 3.7e-279 964.5 608 81.4
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.9e-278 960.3 594 82.7
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 6.9e-278 960.3 594 82.7
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.5e-277 959.1 598 81.3
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 2.0e-277 958.7 597 81.9
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 4.5e-277 957.6 593 83.8
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 1.3e-276 956.1 588 82.8
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 6.4e-276 953.7 594 81.8
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 4.2e-275 951.0 600 81.3
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 9.3e-275 949.9 594 81.6
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 2.7e-274 948.3 604 77.8
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 4.6e-274 947.6 606 80.0
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 7.9e-274 946.8 604 77.6
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 8.7e-273 943.3 602 79.4
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.5e-272 942.6 602 79.6
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.9e-272 942.2 602 79.2
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 5.6e-272 940.6 594 81.1
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.3e-271 939.5 600 79.7
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.6e-271 939.1 598 80.8
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 2.1e-271 938.7 600 79.2
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.1e-271 938.7 600 79.5
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 2.4e-270 935.3 598 79.8
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 2.4e-270 935.3 600 79.8
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.0e-270 934.5 596 80.7
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 4.0e-270 934.5 593 79.9
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 5.3e-270 934.1 602 78.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 2.9e-268 928.3 597 79.1
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 2.9e-268 928.3 594 80.1
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 3.8e-268 927.9 594 80.1
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 1.9e-267 925.6 595 79.8
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 3.2e-267 924.9 594 80.0
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 5.5e-267 924.1 607 78.7
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 5.5e-267 924.1 601 78.2
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.5e-267 924.1 594 79.5
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.2e-266 922.9 594 80.0
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.3e-265 918.7 600 78.0
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 3.0e-265 918.3 594 79.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 2.8e-263 911.8 611 77.3
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 4.8e-263 911.0 585 80.2
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.4e-262 909.4 593 77.6
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.4e-262 909.4 593 77.6
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.1e-262 907.9 607 77.3
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 2.0e-261 905.6 601 76.7
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 5.9e-261 904.0 596 78.2
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 8.5e-260 900.2 605 76.0
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 8.5e-260 900.2 602 76.6
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 1.9e-259 899.0 601 76.4
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 3.2e-259 898.3 605 76.7
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 1.2e-258 896.3 598 77.8
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 1.0e-257 893.3 599 78.5
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.1e-257 891.0 604 76.7
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 8.8e-257 890.2 597 76.5
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 8.8e-257 890.2 593 76.4
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 1.1e-256 889.8 598 75.8
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 1.1e-256 889.8 598 75.8
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 1.1e-256 889.8 598 75.8
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 4.3e-256 887.9 603 75.1
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 1.3e-255 886.3 591 76.0
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.7e-255 885.9 602 76.1
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.2e-255 885.6 606 75.7
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 3.7e-255 884.8 602 74.3
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 9.1e-254 880.2 594 75.3
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 1.2e-253 879.8 594 75.1
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.5e-253 879.4 594 76.6
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.7e-252 875.9 591 76.0
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 2.2e-252 875.5 592 76.2
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-251 872.8 592 76.0
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 2.5e-251 872.1 616 73.1
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 3.2e-251 871.7 608 74.5
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 3.0e-249 865.1 596 74.5
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 6.7e-249 864.0 592 74.5
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 3.3e-248 861.7 610 72.8
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 7.4e-248 860.5 597 74.5
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.8e-247 858.6 592 75.2
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 7.7e-245 850.5 591 74.1
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 1.0e-244 850.1 597 73.2
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 6.1e-242 840.9 605 71.6
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 2.0e-240 835.9 602 71.9
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 4.4e-240 834.7 601 72.2
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 1.7e-239 832.8 598 73.7
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 2.2e-239 832.4 595 73.9
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 3.1e-238 828.6 543 75.3
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 7.7e-237 823.9 548 76.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.3e-236 823.2 611 72.5
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.5e-236 820.5 600 72.3
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 1.9e-235 819.3 611 72.2
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.3e-233 812.4 645 67.4
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 1.5e-232 809.7 606 70.5
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 7.5e-232 807.4 869 54.3
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 3.8e-228 795.0 595 71.9
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 8.5e-228 793.9 618 68.8
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.0e-225 786.9 602 68.8
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.0e-224 782.7 593 71.0
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 4.4e-224 781.6 597 68.7
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.0e-212 743.8 566 68.7
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 4.1e-198 695.3 476 73.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 1.4e-185 653.7 598 61.2
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 2.9e-183 646.0 441 76.0
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 6.2e-178 628.2 519 66.9
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 5.6e-163 578.6 603 52.6
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 4.0e-161 572.4 595 52.3
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.3e-156 557.4 597 53.4
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.0e-143 514.6 600 51.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 5.9e-136 488.8 616 45.6
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 1.9e-134 483.8 586 47.8
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 5.2e-92 342.8 209 79.4
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.5e-91 339.0 243 69.5
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 3.9e-87 326.6 324 54.3
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 2.1e-77 294.3 232 71.1
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.3e-74 285.0 635 33.4
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 3.5e-72 276.9 267 58.4
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 2.8e-61 240.7 583 30.9
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 5.3e-52 209.9 148 70.9
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 2.2e-50 204.5 151 70.2
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.3e-34 152.1 201 45.3
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.6e-32 145.2 98 70.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 7.4e-30 136.3 625 24.0
CAN.G186.61 Capsicum annuum HOM05D004853 ORTHO05D005865 8.5e-26 122.9 212 49.1
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 5.5e-25 120.2 78 74.4
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 9.4e-25 119.4 79 70.9
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 7.9e-24 116.3 79 69.6
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.1e-17 95.9 115 43.5
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.1e-14 85.9 90 51.1
AUR62016554 Chenopodium quinoa HOM05D004853 ORTHO05D005865 1.1e-12 79.3 59 67.8
Sabra10G0126900 Salix brachista HOM05D004853 ORTHO05D005865 3.1e-12 77.8 92 45.7


User provided reference genes

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