Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 1.0e-165 586.6 295 100.0
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 1.7e-104 383.3 254 75.6
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 3.1e-101 372.5 272 69.1
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 3.1e-101 372.5 251 72.5
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 1.7e-99 366.7 232 78.0
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 2.9e-99 365.9 249 73.9
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 4.1e-98 362.1 249 73.5
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 9.2e-98 360.9 245 71.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.1e-97 359.8 250 72.4
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 2.7e-97 359.4 254 70.1
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 7.8e-97 357.8 265 69.4
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 1.3e-96 357.1 231 74.9
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 5.1e-96 355.1 254 70.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 8.6e-96 354.4 253 68.0
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.5e-95 353.6 258 68.2
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.9e-95 353.2 239 72.8
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 1.9e-95 353.2 231 74.9
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 2.5e-95 352.8 254 69.7
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.6e-95 351.7 233 73.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.6e-95 351.7 235 73.6
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 7.3e-95 351.3 252 70.2
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 9.5e-95 350.9 254 69.7
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.1e-94 349.7 247 71.3
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 2.1e-94 349.7 233 73.0
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 2.1e-94 349.7 225 77.3
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 2.1e-94 349.7 254 68.1
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 2.1e-94 349.7 254 68.9
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.1e-94 349.7 254 68.5
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.8e-94 349.4 207 82.6
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.8e-94 349.4 232 72.0
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 3.6e-94 349.0 244 71.7
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 8.1e-94 347.8 254 69.3
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.4e-93 347.1 232 74.1
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.4e-93 347.1 228 75.4
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 1.8e-93 346.7 233 74.7
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.8e-93 346.7 233 74.7
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 1.8e-93 346.7 228 73.7
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.8e-93 346.7 231 73.2
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 4.0e-93 345.5 255 70.2
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 4.0e-93 345.5 231 72.7
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 8.9e-93 344.4 233 72.5
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 8.9e-93 344.4 241 72.6
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.2e-92 344.0 216 77.3
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.5e-92 343.6 257 67.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 1.5e-92 343.6 241 72.2
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 2.0e-92 343.2 235 72.3
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 2.6e-92 342.8 248 70.2
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 2.6e-92 342.8 228 74.1
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 3.4e-92 342.4 260 68.5
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 3.4e-92 342.4 246 67.9
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 3.4e-92 342.4 247 70.4
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 4.4e-92 342.0 240 67.9
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 5.8e-92 341.7 241 72.6
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 7.5e-92 341.3 231 71.0
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 9.9e-92 340.9 247 70.0
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 1.3e-91 340.5 222 74.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.3e-91 340.5 259 67.6
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 2.2e-91 339.7 232 71.1
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 2.2e-91 339.7 241 71.4
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.7e-91 339.0 207 77.8
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.1e-90 337.4 252 70.2
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.4e-90 337.0 232 71.6
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.9e-90 336.7 268 65.7
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.1e-90 335.5 250 70.0
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.2e-89 334.0 235 71.9
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 2.7e-89 332.8 250 69.6
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 3.5e-89 332.4 240 67.5
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.5e-89 332.4 220 75.0
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 6.0e-89 331.6 251 64.5
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 6.0e-89 331.6 221 71.9
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 1.7e-88 330.1 205 78.5
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.3e-88 329.7 232 67.7
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 3.0e-88 329.3 223 71.3
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 3.0e-88 329.3 232 67.7
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 3.0e-88 329.3 207 76.3
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 3.9e-88 328.9 268 61.6
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.1e-88 328.6 204 78.4
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 5.1e-88 328.6 263 62.0
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 2.5e-87 326.2 233 68.2
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.5e-87 326.2 226 68.1
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.3e-87 325.9 228 69.3
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 4.3e-87 325.5 238 67.2
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 4.3e-87 325.5 231 71.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 7.3e-87 324.7 238 66.4
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 9.5e-87 324.3 223 71.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 1.6e-86 323.6 222 72.1
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 1.1e-85 320.9 251 62.9
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 1.1e-85 320.9 219 69.4
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 1.4e-85 320.5 241 66.4
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.4e-85 319.7 187 84.5
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 6.8e-85 318.2 236 66.9
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 6.8e-85 318.2 238 65.1
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 8.9e-85 317.8 215 71.2
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.2e-84 317.4 245 63.7
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.4e-84 315.8 233 67.0
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 1.7e-83 313.5 234 66.7
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.9e-83 312.8 196 79.6
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 3.8e-83 312.4 233 66.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 4.9e-83 312.0 233 66.5
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 8.4e-83 311.2 205 74.6
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.6e-81 307.0 233 65.2
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.6e-81 307.0 230 67.4
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 3.9e-80 302.4 234 65.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 6.6e-80 301.6 204 71.1
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 8.7e-80 301.2 234 65.4
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.7e-80 301.2 204 74.0
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.1e-79 300.8 219 65.8
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 2.1e-78 296.6 259 58.7
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 4.0e-77 292.4 235 61.3
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 3.0e-72 276.2 242 60.3
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 6.6e-72 275.0 223 61.0
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 7.3e-71 271.6 199 66.3
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.4e-69 267.3 260 52.3
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 5.3e-69 265.4 221 60.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.3e-67 260.8 220 60.9
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.6e-65 253.8 182 73.1
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.8e-56 223.8 214 53.3
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 3.9e-56 222.6 221 53.4
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.5e-55 220.7 238 49.2
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.3e-54 217.6 170 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 2.4e-53 213.4 209 51.2
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.2e-52 211.1 187 58.3
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 4.5e-52 209.1 130 76.9
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 3.8e-51 206.1 222 45.9
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.4e-50 204.1 212 51.4
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 3.3e-47 193.0 157 62.4
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 1.9e-42 177.2 109 80.7
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 9.4e-42 174.9 241 37.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 1.3e-38 164.5 213 40.4
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.8e-37 160.6 121 71.1
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 1.1e-29 134.8 119 62.2
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.5e-28 131.0 130 55.4
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 8.8e-24 115.2 91 59.3
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 4.8e-22 109.4 88 67.0
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 4.2e-18 96.3 96 58.3
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 2.7e-17 93.6 120 39.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 5.3e-13 79.3 87 50.6
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 8.5e-11 72.0 251 32.3
SGA_v2.0_scaffold250G44984 Striga asiatica HOM05D005616 ORTHO05D401959 5.5e-10 69.3 77 48.1
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 1.6e-09 67.8 53 66.0


User provided reference genes

Program Settings