Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.4e-217 757.7 386 100.0
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-120 436.8 299 76.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.2e-116 424.1 339 69.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.4e-116 422.5 226 94.2
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 7.3e-111 404.8 226 93.8
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.4e-93 347.4 297 62.6
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.3e-91 340.9 320 59.4
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 8.7e-88 328.2 298 59.1
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.9e-87 327.0 307 59.3
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.8e-86 323.2 313 58.1
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.4e-85 320.1 317 57.1
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 5.4e-82 308.9 299 55.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.3e-79 299.3 323 54.2
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.1e-78 297.0 323 52.9
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 2.8e-78 296.6 319 53.0
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 8.1e-78 295.0 303 54.1
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 2.4e-77 293.5 303 55.1
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.5e-76 289.3 297 53.9
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.8e-76 288.9 297 53.9
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 7.6e-76 288.5 294 52.0
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 9.9e-76 288.1 301 53.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.7e-75 287.3 298 53.7
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 6.4e-75 285.4 343 49.9
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.4e-75 285.0 297 52.9
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.4e-74 284.3 319 49.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 3.5e-73 279.6 319 47.3
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-72 278.1 209 73.2
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.7e-70 269.6 297 50.8
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.1e-69 268.1 296 52.4
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 1.1e-69 268.1 321 50.8
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.3e-67 261.2 298 49.7
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.9e-67 260.0 324 49.4
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.1e-66 255.4 319 49.8
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.2e-65 254.6 304 49.7
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 7.9e-65 251.9 301 49.8
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.9e-64 249.6 381 43.6
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 6.7e-64 248.8 301 49.2
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 6.7e-64 248.8 316 46.2
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 3.7e-62 243.0 315 44.4
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 6.2e-62 242.3 379 40.6
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 8.2e-62 241.9 300 47.7
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.2e-62 241.9 296 48.0
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.1e-61 240.0 319 46.7
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.0e-61 239.6 298 46.6
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.5e-60 237.7 301 47.2
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.0e-60 237.3 304 49.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 3.4e-60 236.5 298 47.3
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 4.5e-60 236.1 320 43.1
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 4.5e-60 236.1 299 46.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.8e-59 233.0 320 46.2
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 6.5e-59 232.3 317 42.6
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 8.4e-59 231.9 296 48.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.1e-58 231.5 316 45.9
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.2e-58 229.9 323 41.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 5.5e-58 229.2 316 43.7
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-57 228.0 299 47.5
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 1.6e-57 227.6 320 42.2
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.7e-57 226.9 321 44.5
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 2.7e-57 226.9 291 46.0
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 4.6e-57 226.1 294 46.6
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.0e-57 225.7 314 44.9
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 6.0e-57 225.7 298 47.0
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.0e-56 224.9 352 42.6
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.0e-56 224.9 338 43.2
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 2.3e-56 223.8 321 43.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 8.7e-56 221.9 301 46.8
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.5e-55 221.1 340 42.4
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.5e-55 221.1 325 43.4
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 2.5e-55 220.3 314 44.6
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 2.5e-55 220.3 314 44.6
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 5.7e-55 219.2 323 41.8
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.3e-54 218.0 298 44.0
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.6e-54 217.6 329 42.2
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 8.2e-54 215.3 302 45.7
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-53 214.9 298 45.0
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.4e-53 214.5 302 45.0
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.2e-52 211.5 299 43.1
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.5e-52 211.1 295 42.7
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.0e-52 210.7 302 44.0
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.3e-51 208.0 318 40.6
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 2.2e-51 207.2 356 39.6
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.2e-51 207.2 296 43.9
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 2.9e-51 206.8 330 41.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.0e-51 206.1 296 43.2
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.5e-51 205.7 302 42.7
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.5e-51 205.7 300 44.7
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 8.5e-51 205.3 297 43.4
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-50 204.9 314 42.7
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.4e-50 204.5 300 44.0
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.2e-50 203.4 295 41.7
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 7.2e-50 202.2 299 42.5
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 1.2e-49 201.4 330 41.2
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 6.1e-49 199.1 227 52.0
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.1e-48 196.1 327 40.7
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 5.1e-48 196.1 298 41.6
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 6.7e-48 195.7 317 38.5
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 8.8e-48 195.3 300 41.7
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.5e-44 184.5 300 42.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 4.5e-44 183.0 284 41.2
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 1.3e-43 181.4 384 35.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.7e-43 181.0 322 38.8
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.8e-43 179.9 355 36.1
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 5.0e-43 179.5 330 36.1
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.9e-42 177.6 295 42.4
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.9e-42 177.6 299 40.8
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 2.1e-41 174.1 289 39.4
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 3.6e-41 173.3 296 39.5
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 4.7e-41 172.9 296 39.5
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.0e-40 171.8 296 39.9
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.0e-40 171.8 296 39.9
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.4e-40 171.4 221 42.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.1e-39 168.3 267 41.2
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-39 168.3 296 39.5
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 4.4e-39 166.4 318 38.1
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 2.8e-38 163.7 304 38.8
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 4.1e-37 159.8 260 44.2
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.0e-32 143.7 301 35.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.9e-32 143.3 237 40.1
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 3.3e-31 140.2 229 40.2
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 7.0e-29 132.5 294 36.1
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 1.6e-28 131.3 292 34.6
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.3e-24 117.5 352 29.8
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.0e-24 117.1 267 35.2
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 3.0e-24 117.1 271 29.5
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 2.0e-23 114.4 107 56.1
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 3.3e-23 113.6 87 60.9
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.7e-22 110.2 221 35.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.1e-21 108.6 93 61.3
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-21 107.8 229 35.8
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-21 107.8 55 98.2
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 8.0e-17 92.4 253 32.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.5e-15 88.2 115 44.3
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 4.4e-15 86.7 157 36.3
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 2.7e-12 77.4 140 33.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.7e-11 74.7 345 23.5
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 8.6e-11 72.4 104 37.5
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.1e-10 72.0 55 60.0
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 9.5e-10 68.9 194 33.5
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 9.5e-10 68.9 45 62.2
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 1.4e-08 65.1 332 25.3
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-08 64.3 75 45.3
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 2.0e-07 61.2 73 43.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.6e-07 60.8 122 32.0
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 2.6e-07 60.8 69 46.4
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 5.7e-07 59.7 75 44.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 9.8e-07 58.9 149 29.5
FAN06G1478 Fragaria x ananassa HOM05D021264 ORTHO05D022594 8.3e-06 55.8 175 30.3


User provided reference genes

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