Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 1.8e-93 345.9 172 100.0
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 1.5e-36 156.8 168 53.6
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 4.9e-35 151.8 168 50.6
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 8.4e-35 151.0 184 48.9
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 1.4e-34 150.2 186 46.8
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 4.6e-33 145.2 146 56.8
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 6.0e-33 144.8 187 50.3
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 1.0e-32 144.1 184 49.5
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 1.0e-32 144.1 178 48.3
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 8.7e-32 141.0 167 51.5
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 1.1e-31 140.6 173 50.9
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 1.5e-31 140.2 177 46.9
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.9e-31 139.8 179 48.6
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 4.3e-31 138.7 180 48.9
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 1.8e-29 133.3 167 46.1
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 4.1e-29 132.1 189 42.9
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 5.3e-29 131.7 174 49.4
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 2.0e-28 129.8 166 45.8
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 4.5e-28 128.6 169 45.6
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.0e-27 127.5 167 49.7
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 2.9e-27 125.9 176 46.0
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 4.2e-26 122.1 185 43.2
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 7.2e-26 121.3 166 48.2
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 1.2e-25 120.6 149 51.0
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 1.2e-25 120.6 193 42.0
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.6e-25 118.6 174 44.3
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.0e-24 115.9 171 46.8
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 3.9e-24 115.5 177 41.2
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 3.3e-23 112.5 163 44.2
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 3.3e-23 112.5 178 43.3
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 4.3e-23 112.1 164 42.1
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 9.7e-23 110.9 170 48.2
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 9.7e-23 110.9 170 48.2
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 9.7e-23 110.9 170 48.2
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.8e-22 109.4 158 43.7
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 2.8e-22 109.4 178 44.9
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 4.1e-21 105.5 163 41.1
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.3e-21 105.1 171 43.3
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 5.3e-21 105.1 172 41.9
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 6.9e-21 104.8 170 42.4
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.2e-20 104.0 176 43.8
TAR688G0002 Trochodendron aralioides HOM05D000645 ORTHO05D005174 1.5e-20 103.6 146 45.9
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 7.7e-20 101.3 156 41.0
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.0e-19 100.9 181 38.7
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.7e-19 100.1 169 42.6
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 2.9e-19 99.4 150 42.7
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.8e-19 99.0 184 39.1
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 6.5e-19 98.2 155 40.0
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.2e-18 95.9 175 40.0
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.2e-18 95.9 93 53.8
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.2e-18 95.9 175 40.0
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 3.2e-18 95.9 158 38.6
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 7.2e-18 94.7 93 53.8
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.6e-17 93.6 143 46.9
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.6e-17 93.6 137 39.4
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 1.6e-17 93.6 171 42.1
CSS0006279 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 6.1e-17 91.7 165 40.0
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 6.1e-17 91.7 182 37.4
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 6.1e-17 91.7 155 34.8
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 7.9e-17 91.3 164 39.6
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.4e-16 90.5 178 38.8
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 3.0e-16 89.4 160 45.6
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.9e-16 89.0 178 38.8
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 5.1e-16 88.6 107 51.4
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 5.1e-16 88.6 155 38.1
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.3e-15 85.9 76 55.3
MD03G1095400 Malus domestica HOM05D005967 ORTHO05D005174 3.3e-15 85.9 161 45.3
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.2e-14 83.2 85 54.1
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 2.2e-14 83.2 151 37.7
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 2.8e-14 82.8 153 35.3
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 3.7e-14 82.4 153 37.3
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 3.7e-14 82.4 126 46.0
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 8.2e-14 81.3 123 47.2
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 1.8e-13 80.1 109 49.5
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.4e-13 79.7 126 45.2
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.4e-13 79.7 126 45.2
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 2.4e-13 79.7 178 36.0
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 3.1e-13 79.3 75 52.0
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 4.1e-13 79.0 179 40.2
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 6.9e-13 78.2 74 60.8
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 9.1e-13 77.8 138 41.3
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 9.1e-13 77.8 116 37.9
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.6e-12 76.3 126 44.4
Peaxi162Scf00679g00042 Petunia axillaris HOM05D005967 ORTHO05D014046 2.6e-12 76.3 143 35.7
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 4.5e-12 75.5 134 40.3
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 7.7e-12 74.7 80 51.2
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.0e-11 74.3 129 41.1
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 1.7e-11 73.6 140 40.7
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 2.2e-11 73.2 114 46.5
Eucgr.A01260 Eucalyptus grandis HOM05D005967 ORTHO05D005174 3.8e-11 72.4 164 36.0
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 3.8e-11 72.4 80 55.0
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 5.0e-11 72.0 192 35.9
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 1.1e-10 70.9 60 56.7
EL10As1g23034 Beta vulgaris HOM05D005967 ORTHO05D005174 1.9e-10 70.1 82 53.7
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 2.5e-10 69.7 72 51.4
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 2.5e-10 69.7 146 34.9
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 5.5e-10 68.6 77 46.8
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 5.5e-10 68.6 119 37.8
Nitab4.5_0000349g0170 Nicotiana tabacum HOM05D016316 ORTHO05D018871 5.5e-10 68.6 155 37.4
Nitab4.5_0004094g0010 Nicotiana tabacum HOM05D005967 ORTHO05D005174 5.5e-10 68.6 114 37.7
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 9.4e-10 67.8 106 40.6
Psat7g217000 Pisum sativum HOM05D005967 ORTHO05D005174 1.2e-09 67.4 91 48.4
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.2e-09 67.4 90 45.6
Peaxi162Scf00832g00006 Petunia axillaris HOM05D030065 ORTHO05D005174 2.1e-09 66.6 137 38.0
Glyma.13G335500 Glycine max HOM05D005967 ORTHO05D005174 2.7e-09 66.2 74 48.6
VMungo1309G2816 Vigna mungo HOM05D005967 ORTHO05D005174 3.6e-09 65.9 73 41.1
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 6.1e-09 65.1 123 35.0
Phvul.008G100200 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 6.1e-09 65.1 172 37.8
Migut.N02671 Erythranthe guttata HOM05D005967 ORTHO05D005174 8.0e-09 64.7 111 38.7
VMungo1080G1048 Vigna mungo HOM05D005967 ORTHO05D005174 8.0e-09 64.7 79 41.8
Medtr4g063885 Medicago truncatula HOM05D005967 ORTHO05D005174 1.4e-08 63.9 98 45.9
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 1.4e-08 63.9 159 37.1
TPR.G23268 Trifolium pratense HOM05D005967 ORTHO05D005174 3.0e-08 62.8 80 48.8
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 3.9e-08 62.4 79 40.5
CARHR285730 Cardamine hirsuta HOM05D012305 ORTHO05D014046 5.2e-08 62.0 162 35.2
AL8G35800 Arabidopsis lyrata HOM05D012305 ORTHO05D014046 6.7e-08 61.6 157 32.5
Ca_28209_v3 Cicer arietinum L. HOM05D005967 ORTHO05D005174 6.7e-08 61.6 94 45.7
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 6.7e-08 61.6 122 36.9
Nitab4.5_0000349g0250 Nicotiana tabacum HOM05D016316 ORTHO05D018871 6.7e-08 61.6 129 36.4
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 8.8e-08 61.2 97 46.4
MSTRG.19086 Avicennia marina HOM05D005967 ORTHO05D005174 1.5e-07 60.5 116 35.3
Haze_20783 Corylus avellana HOM05D005967 ORTHO05D005174 1.5e-07 60.5 161 31.7
Glyma.08G358900 Glycine max HOM05D005967 ORTHO05D005174 2.0e-07 60.1 179 36.9
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 2.6e-07 59.7 176 34.7
TPR.G5598 Trifolium pratense HOM05D005967 ORTHO05D005174 2.6e-07 59.7 159 37.1
Glyma.18G177800 Glycine max HOM05D005967 ORTHO05D005174 3.3e-07 59.3 81 53.1
Psat0s8791g0040 Pisum sativum HOM05D005967 ORTHO05D005174 4.4e-07 58.9 112 39.3
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 5.7e-07 58.5 117 35.9
AT5G59360 Arabidopsis thaliana HOM05D012305 ORTHO05D014046 7.4e-07 58.2 70 44.3
Psat3g141040 Pisum sativum HOM05D005967 ORTHO05D005174 7.4e-07 58.2 83 47.0
Solyc11g066000.1 Solanum lycopersicum HOM05D030065 ORTHO05D005174 7.4e-07 58.2 79 44.3
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 9.7e-07 57.8 74 43.2
THA.LOC104799445 Tarenaya hassleriana HOM05D012305 ORTHO05D014046 9.7e-07 57.8 96 35.4
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 1.3e-06 57.4 117 35.0
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 1.3e-06 57.4 93 44.1
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 1.7e-06 57.0 93 44.1
THA.LOC104823258 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 1.7e-06 57.0 75 44.0
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 2.2e-06 56.6 85 44.7
ClCG04G008210 Citrullus lanatus HOM05D023073 ORTHO05D005174 2.2e-06 56.6 76 42.1
Sed0016652 Sechium edule HOM05D023073 ORTHO05D005174 2.2e-06 56.6 81 44.4
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 3.7e-06 55.8 91 44.0
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 3.7e-06 55.8 91 44.0
Lsat_1_v5_gn_8_75760 Lactuca sativa HOM05D030279 ORTHO05D029282 3.7e-06 55.8 72 45.8
Peaxi162Scf00330g00012 Petunia axillaris HOM05D016316 ORTHO05D018871 3.7e-06 55.8 138 32.6
VMungo0251G0728 Vigna mungo HOM05D005967 ORTHO05D005174 3.7e-06 55.8 83 33.7
Lsat_1_v5_gn_9_23241 Lactuca sativa HOM05D030279 ORTHO05D029282 4.8e-06 55.5 68 44.1
A10p33240 Brassica napus HOM05D010528 ORTHO05D005174 6.3e-06 55.1 91 45.1
BraA10t45352Z Brassica rapa HOM05D010528 ORTHO05D005174 6.3e-06 55.1 91 45.1
Gohir.A09G156500 Gossypium hirsutum HOM05D036294 ORTHO05D036268 6.3e-06 55.1 148 32.4
Lalb_Chr03g0026661 Lupinus albus HOM05D005967 ORTHO05D005174 8.2e-06 54.7 133 36.1


User provided reference genes

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