Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.8e-102 376.3 252 100.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.5e-72 276.2 252 69.4
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 9.7e-72 274.2 252 69.0
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 3.2e-67 259.2 250 56.0
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.1e-65 251.9 253 69.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.3e-64 249.2 247 62.3
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 2.6e-61 239.6 254 67.3
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 1.3e-60 237.3 255 65.9
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 3.8e-60 235.7 250 68.8
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 8.5e-60 234.6 251 59.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.1e-59 234.2 252 61.9
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 2.5e-59 233.0 251 63.7
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.3e-57 226.5 256 59.0
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.5e-56 223.8 256 63.3
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.5e-56 223.8 256 63.3
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 3.3e-56 222.6 256 53.5
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 9.7e-56 221.1 253 66.8
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.7e-55 220.3 250 51.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 1.7e-55 220.3 250 60.4
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 3.7e-55 219.2 250 67.2
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 3.1e-54 216.1 256 57.8
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 4.1e-54 215.7 250 60.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 7.0e-54 214.9 255 50.2
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 9.1e-54 214.5 254 66.1
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 9.1e-54 214.5 276 58.0
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.6e-53 213.8 252 53.6
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.0e-53 213.4 256 57.0
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.6e-53 213.0 252 57.1
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.6e-53 213.0 257 50.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 3.5e-53 212.6 252 61.1
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 7.7e-53 211.5 256 52.0
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 7.7e-53 211.5 252 67.1
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 1.3e-52 210.7 250 59.6
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 5.0e-52 208.8 254 51.6
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 1.1e-51 207.6 259 64.9
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.9e-51 206.8 244 49.6
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.9e-51 206.8 245 48.2
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.9e-51 206.8 254 65.4
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.5e-51 205.3 264 48.1
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 7.2e-51 204.9 254 61.8
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 2.1e-50 203.4 252 66.3
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 3.6e-50 202.6 241 49.0
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 3.6e-50 202.6 250 60.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 6.1e-50 201.8 249 47.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 6.1e-50 201.8 256 49.2
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.0e-49 201.1 254 46.9
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.4e-49 200.7 254 61.0
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 1.8e-49 200.3 252 65.5
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.3e-49 199.9 254 63.4
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 1.2e-48 197.6 252 56.3
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.2e-48 197.6 252 56.3
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.0e-48 196.8 255 46.3
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 2.0e-48 196.8 254 65.4
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 2.6e-48 196.4 256 61.3
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.6e-48 196.4 252 53.2
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 7.5e-48 194.9 249 49.0
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 9.7e-48 194.5 114 90.4
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 2.8e-47 193.0 256 47.7
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 3.7e-47 192.6 246 62.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 4.8e-47 192.2 254 53.5
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 6.3e-47 191.8 257 56.8
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.1e-46 191.0 256 50.0
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.1e-46 191.0 257 54.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.1e-46 189.1 251 47.8
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 5.3e-46 188.7 254 62.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 5.3e-46 188.7 255 46.3
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 5.3e-46 188.7 257 61.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 5.3e-46 188.7 246 58.5
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.2e-45 187.6 253 55.7
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 1.6e-45 187.2 246 56.1
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 2.0e-45 186.8 256 52.3
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 7.7e-45 184.9 249 45.8
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.3e-44 184.1 215 60.0
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.3e-44 184.1 268 52.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.7e-44 183.7 256 46.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.7e-44 183.7 254 52.4
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 3.8e-44 182.6 254 52.4
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.0e-44 182.2 249 53.8
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 6.5e-44 181.8 260 45.4
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 8.5e-44 181.4 259 51.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.1e-43 181.0 249 51.4
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.1e-43 181.0 254 51.6
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.1e-43 181.0 254 51.6
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.5e-43 180.6 213 56.8
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 2.5e-43 179.9 254 51.6
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.2e-43 179.5 253 44.3
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 3.2e-43 179.5 256 50.8
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 7.2e-43 178.3 251 46.2
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 7.2e-43 178.3 254 51.6
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.1e-42 176.8 256 61.7
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.7e-42 176.4 242 53.7
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 2.7e-42 176.4 249 45.4
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 3.6e-42 176.0 250 62.0
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.0e-41 174.5 254 50.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.0e-41 174.5 218 54.6
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.2e-40 171.0 207 48.3
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 2.0e-40 170.2 207 57.0
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 2.0e-40 170.2 248 42.7
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.0e-40 170.2 246 52.0
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 1.3e-39 167.5 242 58.7
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.8e-39 166.4 262 48.1
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.3e-39 165.2 227 55.1
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 8.3e-39 164.9 248 51.2
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.1e-38 164.5 271 41.3
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.4e-38 164.1 251 43.8
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 5.4e-38 162.2 192 69.8
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.4e-38 162.2 213 47.9
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 9.1e-38 161.4 190 70.5
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 9.1e-38 161.4 263 47.1
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.7e-36 157.1 257 42.4
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.7e-36 157.1 257 42.4
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.9e-35 153.7 259 47.9
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 1.2e-34 151.0 230 49.6
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 6.1e-34 148.7 215 44.7
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 1.4e-33 147.5 261 46.7
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 2.3e-33 146.7 124 60.5
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 3.4e-32 142.9 125 60.8
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 1.7e-31 140.6 120 61.7
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 1.8e-30 137.1 123 56.9
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 7.5e-24 115.2 128 50.8
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.4e-22 110.9 83 68.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.6e-21 105.9 83 66.3
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 4.3e-19 99.4 78 65.4
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 3.6e-18 96.3 229 29.7
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.6e-18 96.3 202 31.2
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 8.0e-18 95.1 89 58.4
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 9.8e-16 88.2 232 28.9
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.3e-15 87.8 217 28.1
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.4e-14 84.3 94 55.3
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 3.2e-14 83.2 185 30.3
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 7.1e-14 82.0 81 56.8
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 8.6e-12 75.1 229 26.2
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 4.7e-10 69.3 89 48.3
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 8.1e-10 68.6 80 47.5
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.1e-06 58.2 229 22.7
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.4e-06 55.8 224 25.9


User provided reference genes

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