Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0984 Trochodendron aralioides HOM05D002688 ORTHO05D002911 2.8e-88 328.6 161 100.0
Nn2g15180 Nelumbo nucifera HOM05D002688 ORTHO05D002911 5.0e-21 105.1 63 69.8
Nn7g36345 Nelumbo nucifera HOM05D002688 ORTHO05D002911 4.2e-20 102.1 65 70.8
GSVIVG01001439001 Vitis vinifera HOM05D002688 ORTHO05D002911 1.1e-17 94.0 135 41.5
Atru.chr11.2541 Acer truncatum HOM05D002688 ORTHO05D002911 2.0e-17 93.2 61 67.2
Potri.001G261000 Populus trichocarpa HOM05D002688 ORTHO05D002911 3.3e-17 92.4 61 68.9
Manes.07G011700 Manihot esculenta HOM05D002688 ORTHO05D002911 4.4e-17 92.0 61 68.9
Ciclev10032531m.g Citrus clementina HOM05D002688 ORTHO05D002911 1.3e-16 90.5 52 75.0
CiPaw.14G003800 Carya illinoinensis HOM05D002688 ORTHO05D002911 2.2e-16 89.7 136 38.2
Cfa010823 Carpinus fangiana HOM05D002688 ORTHO05D002911 3.7e-16 89.0 50 76.0
Gohir.D08G162500 Gossypium hirsutum HOM05D002688 ORTHO05D002911 3.7e-16 89.0 61 65.6
Aqoxy1G00319 Aquilegia oxysepala HOM05D002688 ORTHO05D002911 4.8e-16 88.6 55 69.1
Cc02_g28990 Coffea canephora HOM05D002688 ORTHO05D002911 4.8e-16 88.6 63 60.3
RcHm_v2.0_Chr1g0318181 Rosa chinensis HOM05D002688 ORTHO05D002911 6.3e-16 88.2 53 67.9
Gohir.A08G141400 Gossypium hirsutum HOM05D002688 ORTHO05D002911 8.2e-16 87.8 50 74.0
Gorai.004G168900 Gossypium raimondii HOM05D002688 ORTHO05D002911 8.2e-16 87.8 50 74.0
Actinidia23255 Actinidia chinensis HOM05D002688 ORTHO05D002911 1.4e-15 87.0 57 70.2
FAN01G1665 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.4e-15 87.0 53 64.2
FAN10G3609 Fragaria x ananassa HOM05D002688 ORTHO05D002911 1.4e-15 87.0 53 64.2
PSO339G1014 Papaver somniferum HOM05D002688 ORTHO05D002911 1.4e-15 87.0 49 77.6
Rhsim07G0059300 Rhododendron simsii HOM05D002688 ORTHO05D002911 1.4e-15 87.0 55 65.5
CSS0035182 Camellia sinensis var. sinensis HOM05D002688 ORTHO05D002911 1.8e-15 86.7 55 69.1
Nitab4.5_0011487g0010 Nicotiana tabacum HOM05D002688 ORTHO05D002911 2.4e-15 86.3 59 57.6
Peaxi162Scf01108g00331 Petunia axillaris HOM05D002688 ORTHO05D002911 2.4e-15 86.3 60 58.3
MD02G1301500 Malus domestica HOM05D002688 ORTHO05D002911 3.1e-15 85.9 60 65.0
Hma1.2p1_0269F.1_g107770 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 4.1e-15 85.5 142 38.0
MD07G1022400 Malus domestica HOM05D002688 ORTHO05D002911 4.1e-15 85.5 60 65.0
Sabra09G0040700 Salix brachista HOM05D002688 ORTHO05D002911 4.1e-15 85.5 62 62.9
Duzib133G1529 Durio zibethinus HOM05D002688 ORTHO05D002911 6.9e-15 84.7 61 62.3
Eucgr.G03283 Eucalyptus grandis HOM05D002688 ORTHO05D002911 6.9e-15 84.7 62 61.3
Hma1.2p1_0685F.1_g203300 Hydrangea macrophylla HOM05D002688 ORTHO05D002911 6.9e-15 84.7 50 70.0
PSO384G1250 Papaver somniferum HOM05D002688 ORTHO05D002911 6.9e-15 84.7 61 65.6
Thecc.01G404400 Theobroma cacao HOM05D002688 ORTHO05D002911 6.9e-15 84.7 50 72.0
Sp5g02340 Schrenkiella parvula HOM05D002688 ORTHO05D002911 9.1e-15 84.3 50 68.0
CDE02G4048 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 1.2e-14 84.0 128 40.6
ECA248G3893 Erigeron canadensis HOM05D002688 ORTHO05D002911 1.2e-14 84.0 64 59.4
FvH4_7g01670 Fragaria vesca HOM05D002688 ORTHO05D002911 1.5e-14 83.6 53 62.3
HanXRQChr06g0179711 Helianthus annuus HOM05D002688 ORTHO05D002911 1.5e-14 83.6 64 56.2
SalBow6G5965 Salvia bowleyana HOM05D002688 ORTHO05D002911 2.0e-14 83.2 59 57.6
vmacro13703 Vaccinium macrocarpon HOM05D002688 ORTHO05D002911 2.0e-14 83.2 58 63.8
COL.COLO4_12330 Corchorus olitorius HOM05D002688 ORTHO05D002911 2.6e-14 82.8 50 70.0
Cpa.g.sc125.56 Carica papaya HOM05D002688 ORTHO05D002911 3.4e-14 82.4 52 65.4
CiPaw.13G008400 Carya illinoinensis HOM05D002688 ORTHO05D002911 3.4e-14 82.4 50 70.0
FAN03G0468 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.4e-14 82.4 53 60.4
FAN03G1555 Fragaria x ananassa HOM05D002688 ORTHO05D002911 3.4e-14 82.4 53 60.4
Glyma.12G010200 Glycine max HOM05D002688 ORTHO05D002911 4.5e-14 82.0 50 66.0
FAN03G1637 Fragaria x ananassa HOM05D002688 ORTHO05D002911 7.7e-14 81.3 53 58.5
Hund02960 Selenicereus undatus HOM05D002688 ORTHO05D002911 1.0e-13 80.9 55 63.6
A07p25270 Brassica napus HOM05D002688 ORTHO05D002911 1.3e-13 80.5 50 68.0
BraA07t30169Z Brassica rapa HOM05D002688 ORTHO05D002911 1.3e-13 80.5 50 68.0
CDE08G0966 Ceratophyllum demersum HOM05D002688 ORTHO05D002911 1.3e-13 80.5 49 73.5
ClCG09G004460 Citrullus lanatus HOM05D002688 ORTHO05D002911 1.3e-13 80.5 50 62.0
Manes.10G135200 Manihot esculenta HOM05D002688 ORTHO05D002911 1.3e-13 80.5 132 39.4
PGR031G3541 Punica granatum HOM05D002688 ORTHO05D002911 1.3e-13 80.5 52 63.5
BcaC08g45095 Brassica carinata HOM05D002688 ORTHO05D002911 1.7e-13 80.1 50 66.0
C06p27030 Brassica napus HOM05D002688 ORTHO05D002911 1.7e-13 80.1 50 66.0
BolC6t37875H Brassica oleracea HOM05D002688 ORTHO05D002911 1.7e-13 80.1 50 66.0
Migut.N01803 Erythranthe guttata HOM05D002688 ORTHO05D002911 1.7e-13 80.1 56 62.5
Phvul.011G010500 Phaseolus vulgaris HOM05D002688 ORTHO05D002911 1.7e-13 80.1 50 64.0
Sed0003035 Sechium edule HOM05D002688 ORTHO05D002911 1.7e-13 80.1 57 57.9
VMungo1127G1560 Vigna mungo HOM05D002688 ORTHO05D002911 3.8e-13 79.0 50 62.0
MSTRG.5046 Avicennia marina HOM05D002688 ORTHO05D002911 5.0e-13 78.6 60 51.7
Sc14g0004970 Simmondsia chinensis HOM05D002688 ORTHO05D002911 5.0e-13 78.6 50 66.0
PGSC0003DMG400006770 Solanum tuberosum HOM05D002688 ORTHO05D002911 5.0e-13 78.6 60 53.3
Thhalv10006192m.g Eutrema salsugineum HOM05D002688 ORTHO05D002911 8.5e-13 77.8 51 66.7
SGA_v2.0_scaffold354G49751 Striga asiatica HOM05D002688 ORTHO05D002911 8.5e-13 77.8 59 55.9
AL5G43230 Arabidopsis lyrata HOM05D002688 ORTHO05D002911 1.1e-12 77.4 50 64.0
AT3G60910 Arabidopsis thaliana HOM05D002688 ORTHO05D002911 1.1e-12 77.4 50 64.0
Carub.0005s2766 Capsella rubella HOM05D002688 ORTHO05D002911 1.1e-12 77.4 50 64.0
MELO3C023588.2 Cucumis melo HOM05D002688 ORTHO05D002911 1.1e-12 77.4 50 58.0
Oeu027367.2 Olea europaea HOM05D002688 ORTHO05D002911 1.1e-12 77.4 50 64.0
Dinv07427 Davidia involucrata HOM05D002688 ORTHO05D002911 1.4e-12 77.0 46 69.6
Glyma.09G226600 Glycine max HOM05D002688 ORTHO05D002911 1.4e-12 77.0 59 55.9
Sopen01g034900 Solanum pennellii HOM05D002688 ORTHO05D002911 1.4e-12 77.0 60 50.0
Ca_26317_v3 Cicer arietinum L. HOM05D002688 ORTHO05D002911 1.9e-12 76.6 45 71.1
HanXRQChr01g0015671 Helianthus annuus HOM05D002688 ORTHO05D002911 1.9e-12 76.6 54 61.1
Lalb_Chr01g0000511 Lupinus albus HOM05D002688 ORTHO05D002911 1.9e-12 76.6 50 66.0
BcaB02g07393 Brassica carinata HOM05D002688 ORTHO05D002911 2.5e-12 76.3 50 64.0
CANSAT80G0975 Cannabis sativa HOM05D002688 ORTHO05D002911 2.5e-12 76.3 50 64.0
CARHR171300 Cardamine hirsuta HOM05D002688 ORTHO05D002911 2.5e-12 76.3 50 62.0
Lsat_1_v5_gn_1_102320 Lactuca sativa HOM05D002688 ORTHO05D002911 2.5e-12 76.3 55 60.0
Lj7C576G5 Lonicera japonica HOM05D002688 ORTHO05D002911 3.2e-12 75.9 49 61.2
THA.LOC104801972 Tarenaya hassleriana HOM05D002688 ORTHO05D002911 3.2e-12 75.9 52 55.8
Medtr0003s0620 Medicago truncatula HOM05D002688 ORTHO05D002911 4.2e-12 75.5 50 60.0
Psat7g146520 Pisum sativum HOM05D002688 ORTHO05D002911 5.5e-12 75.1 49 63.3
Sabra16G0159600 Salix brachista HOM05D002688 ORTHO05D002911 5.5e-12 75.1 50 68.0
Solyc01g088000.4 Solanum lycopersicum HOM05D002688 ORTHO05D002911 7.2e-12 74.7 59 47.5
CAN.G909.16 Capsicum annuum HOM05D002688 ORTHO05D002911 1.2e-11 73.9 138 33.3
arahy.Tifrunner.gnm1.ann1.KYFF3P Arachis hypogaea HOM05D002688 ORTHO05D002911 1.6e-11 73.6 44 68.2
arahy.Tifrunner.gnm1.ann1.UW2SL3 Arachis hypogaea HOM05D002688 ORTHO05D002911 1.6e-11 73.6 44 68.2
Lj3g0020648 Lotus japonicus HOM05D002688 ORTHO05D002911 1.6e-11 73.6 49 57.1
CsaV3_7G030680 Cucumis sativus L. HOM05D002688 ORTHO05D002911 4.7e-11 72.0 50 56.0
BcaC07g40610 Brassica carinata HOM05D002688 ORTHO05D002911 1.0e-10 70.9 62 53.2
C08p35850 Brassica napus HOM05D002688 ORTHO05D002911 1.0e-10 70.9 62 53.2
TPR.G8364 Trifolium pratense HOM05D002688 ORTHO05D002911 1.0e-10 70.9 50 62.0
TWI73G0483 Tripterygium wilfordii HOM05D002688 ORTHO05D002911 3.0e-10 69.3 55 58.2
SEGI_29949 Sequoiadendron giganteum HOM05D002688 ORTHO05D002911 6.7e-10 68.2 48 68.8
ATR0680G068 Amborella trichopoda HOM05D002688 ORTHO05D002911 8.8e-10 67.8 48 62.5
BcaC07g42648 Brassica carinata HOM05D002688 ORTHO05D002911 8.8e-10 67.8 48 54.2
Zm00001eb329570 Zea mays HOM05D002688 ORTHO05D002911 8.8e-10 67.8 46 54.3
unitig_22.g5874 Utricularia gibba HOM05D002688 ORTHO05D002911 2.0e-09 66.6 51 54.9
HPP92_001357 Vanilla planifolia HOM05D002688 ORTHO05D002911 2.0e-09 66.6 50 56.0
Ah.16g100690 Amaranthus hybridus HOM05D002688 ORTHO05D002911 9.7e-09 64.3 52 53.8
AUR62023104 Chenopodium quinoa HOM05D002688 ORTHO05D002911 9.7e-09 64.3 63 47.6
AUR62009425 Chenopodium quinoa HOM05D002688 ORTHO05D002911 2.8e-08 62.8 48 56.2
Ah.09g235230 Amaranthus hybridus HOM05D002688 ORTHO05D002911 8.2e-08 61.2 53 52.8
EL10Ac2g04381 Beta vulgaris HOM05D002688 ORTHO05D002911 4.1e-07 58.9 53 50.9


User provided reference genes

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