Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0970 Trochodendron aralioides HOM05D005349 ORTHO05D415159 4.5e-58 227.6 109 100.0
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.1e-15 85.9 76 64.5
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 9.8e-13 77.0 91 47.3
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 2.2e-12 75.9 91 47.3
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 1.1e-11 73.6 86 46.5
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.4e-11 72.4 44 77.3
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.5e-10 68.6 44 75.0
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 3.5e-10 68.6 44 75.0
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 7.8e-10 67.4 101 41.6
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 1.3e-09 66.6 43 74.4
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.3e-09 65.9 43 74.4
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 2.3e-09 65.9 44 70.5
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 2.3e-09 65.9 44 70.5
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.3e-09 65.9 91 41.8
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 3.9e-09 65.1 43 72.1
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 8.6e-09 63.9 43 74.4
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 8.6e-09 63.9 43 69.8
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 1.1e-08 63.5 95 40.0
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 1.1e-08 63.5 42 69.0
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 1.5e-08 63.2 43 69.8
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.5e-08 63.2 43 67.4
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.5e-08 63.2 43 69.8
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 69.8
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 69.8
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 69.8
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 67.4
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 67.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 67.4
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 1.9e-08 62.8 43 72.1
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 2.5e-08 62.4 43 69.8
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 2.5e-08 62.4 43 69.8
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 2.5e-08 62.4 43 69.8
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 3.3e-08 62.0 43 67.4
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 3.3e-08 62.0 43 67.4
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 3.3e-08 62.0 90 38.9
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 4.3e-08 61.6 42 69.0
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 4.3e-08 61.6 42 66.7
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 4.3e-08 61.6 91 38.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 4.3e-08 61.6 43 67.4
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 4.3e-08 61.6 42 69.0
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.6e-08 61.2 45 66.7
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.6e-08 61.2 45 66.7
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 5.6e-08 61.2 43 67.4
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 5.6e-08 61.2 96 37.5
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 5.6e-08 61.2 42 69.0
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 5.6e-08 61.2 43 67.4
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 5.6e-08 61.2 42 69.0
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 7.3e-08 60.8 43 67.4
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 7.3e-08 60.8 38 71.1
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 7.3e-08 60.8 43 67.4
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 9.5e-08 60.5 42 66.7
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 9.5e-08 60.5 43 67.4
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 9.5e-08 60.5 42 66.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 9.5e-08 60.5 42 66.7
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 66.7
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 1.2e-07 60.1 41 65.9
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 66.7
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 66.7
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 66.7
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 66.7
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.2e-07 60.1 42 69.0
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 1.6e-07 59.7 45 64.4
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 1.6e-07 59.7 95 37.9
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 1.6e-07 59.7 43 67.4
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 1.6e-07 59.7 42 66.7
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 1.6e-07 59.7 39 69.2
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.6e-07 59.7 43 67.4
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-07 59.3 99 34.3
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-07 59.3 99 34.3
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 2.1e-07 59.3 42 64.3
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 2.1e-07 59.3 43 65.1
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 2.1e-07 59.3 39 66.7
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.8e-07 58.9 43 65.1
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 2.8e-07 58.9 39 66.7
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 3.6e-07 58.5 99 34.3
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 4.7e-07 58.2 43 65.1
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 6.2e-07 57.8 43 60.5
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 6.2e-07 57.8 43 65.1
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 6.2e-07 57.8 48 58.3
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 6.2e-07 57.8 43 60.5
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 8.0e-07 57.4 42 61.9
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 8.0e-07 57.4 42 61.9
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 8.0e-07 57.4 43 65.1
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 8.0e-07 57.4 43 65.1
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 8.0e-07 57.4 43 62.8
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 8.0e-07 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 1.1e-06 57.0 99 33.3
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.1e-06 57.0 42 61.9
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 1.1e-06 57.0 88 35.2
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 1.4e-06 56.6 43 60.5
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 1.4e-06 56.6 43 62.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 1.4e-06 56.6 43 62.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.4e-06 56.6 43 62.8
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 1.4e-06 56.6 43 62.8
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 1.8e-06 56.2 43 60.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 1.8e-06 56.2 42 59.5
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 1.8e-06 56.2 74 43.2
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.3e-06 55.8 42 59.5
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 2.3e-06 55.8 42 59.5
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.3e-06 55.8 43 62.8
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.3e-06 55.8 43 60.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.1e-06 55.5 43 60.5
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 3.1e-06 55.5 40 62.5
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 4.0e-06 55.1 43 60.5
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 4.0e-06 55.1 78 39.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 4.0e-06 55.1 43 62.8
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 5.2e-06 54.7 47 55.3
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 5.2e-06 54.7 43 60.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 6.8e-06 54.3 37 64.9
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 8.9e-06 53.9 49 61.2
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 8.9e-06 53.9 42 61.9
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 8.9e-06 53.9 47 53.2


User provided reference genes

Program Settings