Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 7.5e-42 173.7 106 100.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.2e-20 103.2 108 55.6
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 2.3e-19 99.0 109 56.0
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 4.0e-19 98.2 111 49.5
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 2.2e-17 92.4 109 51.4
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 4.9e-17 91.3 111 51.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 6.4e-17 90.9 105 48.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 1.9e-16 89.4 108 48.1
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.4e-16 89.0 106 50.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 2.4e-16 89.0 108 49.1
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 4.1e-16 88.2 109 52.3
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.1e-16 88.2 114 62.3
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 4.1e-16 88.2 114 62.3
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 7.1e-16 87.4 109 51.4
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.6e-15 86.3 107 53.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.1e-15 85.9 107 49.5
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 3.5e-15 85.1 107 45.8
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 7.8e-15 84.0 117 48.7
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-14 82.8 109 48.6
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 2.3e-14 82.4 110 49.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.3e-14 82.4 108 49.1
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 3.0e-14 82.0 108 50.9
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.6e-14 80.9 109 46.8
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 6.6e-14 80.9 109 46.8
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 6.6e-14 80.9 109 48.6
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 8.6e-14 80.5 109 50.5
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 8.6e-14 80.5 109 48.6
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 109 50.5
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.1e-13 80.1 109 50.5
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-13 80.1 104 50.0
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.1e-13 80.1 107 47.7
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-13 80.1 107 59.8
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.5e-13 79.7 105 42.9
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 1.5e-13 79.7 112 48.2
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.5e-13 79.7 107 47.7
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.9e-13 79.3 109 58.7
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 4.3e-13 78.2 108 50.9
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 4.3e-13 78.2 107 45.8
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 4.3e-13 78.2 108 55.6
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 5.6e-13 77.8 106 43.4
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.6e-13 77.8 107 46.7
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 5.6e-13 77.8 104 48.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 7.3e-13 77.4 113 45.1
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 7.3e-13 77.4 109 57.8
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.3e-13 77.4 109 57.8
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 54.6
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-12 76.3 106 41.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.6e-12 76.3 110 48.2
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 2.1e-12 75.9 109 48.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.1e-12 75.9 113 44.2
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 2.8e-12 75.5 112 59.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.8e-12 75.5 108 42.6
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.8e-12 75.5 108 52.8
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 3.6e-12 75.1 109 45.9
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.6e-12 75.1 106 58.5
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.7e-12 74.7 108 62.0
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.2e-12 74.3 110 46.4
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 6.2e-12 74.3 107 47.7
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 6.2e-12 74.3 108 44.4
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 8.1e-12 73.9 108 46.3
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 8.1e-12 73.9 108 46.3
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 8.1e-12 73.9 108 46.3
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.1e-11 73.6 110 47.3
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 1.1e-11 73.6 108 45.4
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 46.3
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.4e-11 73.2 108 43.5
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 1.4e-11 73.2 106 43.4
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.8e-11 72.8 107 41.1
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.8e-11 72.8 104 49.0
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 3.1e-11 72.0 107 43.9
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.1e-11 72.0 111 47.7
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.1e-11 72.0 104 47.1
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 3.1e-11 72.0 104 47.1
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 3.1e-11 72.0 107 43.9
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.2e-11 71.2 107 43.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 5.2e-11 71.2 107 51.4
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 5.2e-11 71.2 95 49.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.8e-11 70.9 113 43.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 6.8e-11 70.9 110 42.7
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 6.8e-11 70.9 107 47.7
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 8.9e-11 70.5 107 44.9
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.0e-10 69.3 41 78.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.0e-10 69.3 112 48.2
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.0e-10 69.3 104 44.2
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 2.6e-10 68.9 108 44.4
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 4.4e-10 68.2 108 43.5
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.4e-10 68.2 109 40.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 4.4e-10 68.2 113 43.4
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 5.8e-10 67.8 113 54.9
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 5.8e-10 67.8 106 46.2
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 5.8e-10 67.8 109 43.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 7.6e-10 67.4 111 41.4
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 9.9e-10 67.0 109 53.2
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 9.9e-10 67.0 110 42.7
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 39.4
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 2.2e-09 65.9 113 45.1
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.9e-09 65.5 110 55.5
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 2.9e-09 65.5 110 43.6
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.8e-09 65.1 105 56.2
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 4.9e-09 64.7 102 44.1
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 4.9e-09 64.7 103 41.7
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 4.9e-09 64.7 117 41.9
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.9e-09 64.7 103 40.8
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.4e-09 64.3 91 40.7
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 107 38.3
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 109 42.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 109 42.2
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.9e-08 62.8 109 54.1
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.9e-08 62.8 110 56.4
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.4e-08 62.4 106 43.4
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.4e-08 62.4 116 40.5
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.2e-08 62.0 109 56.0
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.2e-08 62.0 115 38.3
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 4.1e-08 61.6 37 73.0
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 5.4e-08 61.2 116 39.7
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.1e-08 60.8 106 42.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 1.2e-07 60.1 106 41.5
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 97 42.3
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.2e-07 60.1 87 41.4
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.6e-07 59.7 105 41.0
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.6e-07 59.7 106 40.6
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 41.0
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 41.0
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 41.0
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.1e-07 59.3 105 42.9
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-07 58.9 109 50.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.7e-07 58.9 109 38.5
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.6e-07 58.2 109 39.4
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 6.0e-07 57.8 108 51.9
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 6.0e-07 57.8 38 68.4
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 6.0e-07 57.8 109 39.4
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 7.8e-07 57.4 111 45.9
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 106 51.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.3e-06 56.6 105 41.0
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.3e-06 56.6 113 36.3
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.7e-06 56.2 106 43.4
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.7e-06 56.2 106 43.4
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 1.7e-06 56.2 114 42.1
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.3e-06 55.8 105 40.0
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 3.0e-06 55.5 38 68.4
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.0e-06 55.5 110 38.2
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 3.9e-06 55.1 105 39.0
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 109 40.4
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 5.1e-06 54.7 94 37.2
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 8.6e-06 53.9 111 51.4


User provided reference genes

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