Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0925 Trochodendron aralioides HOM05D005656 ORTHO05D007094 9.6e-98 360.1 180 100.0
Cpa.g.sc130.11 Carica papaya HOM05D005656 ORTHO05D007094 7.2e-45 184.5 104 88.5
COL.COLO4_08768 Corchorus olitorius HOM05D005656 ORTHO05D007094 9.4e-45 184.1 104 89.4
Eucgr.I01666 Eucalyptus grandis HOM05D005656 ORTHO05D007094 2.7e-44 182.6 104 88.5
PGR142G1770 Punica granatum HOM05D005656 ORTHO05D007094 2.7e-44 182.6 104 88.5
QL02p072623 Quercus lobata HOM05D005656 ORTHO05D007094 2.7e-44 182.6 104 88.5
Dinv25681 Davidia involucrata HOM05D005656 ORTHO05D007094 8.0e-44 181.0 104 86.5
Duzib264G0552 Durio zibethinus HOM05D005656 ORTHO05D007094 8.0e-44 181.0 104 86.5
Manes.15G157800 Manihot esculenta HOM05D005656 ORTHO05D007094 1.0e-43 180.6 104 87.5
CiPaw.03G052000 Carya illinoinensis HOM05D005656 ORTHO05D007094 1.4e-43 180.3 104 87.5
Gohir.D04G079100 Gossypium hirsutum HOM05D005656 ORTHO05D007094 1.4e-43 180.3 104 86.5
Gorai.012G089000 Gossypium raimondii HOM05D005656 ORTHO05D007094 1.4e-43 180.3 104 86.5
TAR629G1348 Trochodendron aralioides HOM05D005656 ORTHO05D007094 1.4e-43 180.3 104 88.5
Ciclev10014955m.g Citrus clementina HOM05D005656 ORTHO05D007094 1.8e-43 179.9 104 86.5
Nn3g16535 Nelumbo nucifera HOM05D005656 ORTHO05D007094 1.8e-43 179.9 104 86.5
Oeu013956.6 Olea europaea HOM05D005656 ORTHO05D007094 1.8e-43 179.9 104 86.5
Thhalv10013274m.g Eutrema salsugineum HOM05D005656 ORTHO05D007094 3.0e-43 179.1 98 90.8
Sp6g29770 Schrenkiella parvula HOM05D005656 ORTHO05D007094 3.0e-43 179.1 98 90.8
Actinidia05925 Actinidia chinensis HOM05D005656 ORTHO05D007094 4.0e-43 178.7 104 86.5
AT5G14260 Arabidopsis thaliana HOM05D005656 ORTHO05D007094 4.0e-43 178.7 98 89.8
CARHR199080 Cardamine hirsuta HOM05D005656 ORTHO05D007094 4.0e-43 178.7 98 89.8
arahy.Tifrunner.gnm1.ann1.2KKI49 Arachis hypogaea HOM05D005656 ORTHO05D007094 5.2e-43 178.3 104 86.5
Carub.0006s1246 Capsella rubella HOM05D005656 ORTHO05D007094 5.2e-43 178.3 98 90.8
ATR0824G269 Amborella trichopoda HOM05D005656 ORTHO05D007094 6.7e-43 177.9 111 80.2
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 6.7e-43 177.9 98 89.8
BraA02t05211Z Brassica rapa HOM05D005656 ORTHO05D007094 6.7e-43 177.9 98 89.8
Gohir.D11G069000 Gossypium hirsutum HOM05D005656 ORTHO05D007094 1.2e-42 177.2 104 85.6
Gorai.007G073800 Gossypium raimondii HOM05D005656 ORTHO05D007094 1.2e-42 177.2 104 85.6
vmacro05935 Vaccinium macrocarpon HOM05D005656 ORTHO05D007094 1.2e-42 177.2 104 84.6
ClCG05G013280 Citrullus lanatus HOM05D005656 ORTHO05D007094 1.5e-42 176.8 104 83.7
Lalb_Chr02g0157861 Lupinus albus HOM05D005656 ORTHO05D007094 1.5e-42 176.8 104 84.6
HPP92_024278 Vanilla planifolia HOM05D005656 ORTHO05D007094 1.5e-42 176.8 103 85.4
BcaB08g36971 Brassica carinata HOM05D005656 ORTHO05D007094 2.0e-42 176.4 98 88.8
CDE09G0728 Ceratophyllum demersum HOM05D005656 ORTHO05D007094 2.0e-42 176.4 104 85.6
Prupe.3G302300 Prunus persica HOM05D005656 ORTHO05D007094 2.0e-42 176.4 104 84.6
Sopen02g017160 Solanum pennellii HOM05D005656 ORTHO05D007094 2.0e-42 176.4 104 84.6
Thecc.04G029600 Theobroma cacao HOM05D005656 ORTHO05D007094 2.0e-42 176.4 104 84.6
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 2.6e-42 176.0 98 88.8
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 2.6e-42 176.0 98 88.8
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 2.6e-42 176.0 98 88.8
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 2.6e-42 176.0 98 88.8
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 2.6e-42 176.0 98 88.8
Sed0013971 Sechium edule HOM05D005656 ORTHO05D007094 2.6e-42 176.0 104 85.6
GSVIVG01001828001 Vitis vinifera HOM05D005656 ORTHO05D007094 2.6e-42 176.0 104 85.6
arahy.Tifrunner.gnm1.ann1.39JT4A Arachis hypogaea HOM05D005656 ORTHO05D007094 3.3e-42 175.6 104 85.6
MSTRG.24081 Avicennia marina HOM05D005656 ORTHO05D007094 3.3e-42 175.6 110 80.0
TAR362G0771 Trochodendron aralioides HOM05D005656 ORTHO05D007094 3.3e-42 175.6 99 89.9
CsaV3_3G027250 Cucumis sativus L. HOM05D005656 ORTHO05D007094 4.4e-42 175.3 104 82.7
RcHm_v2.0_Chr2g0174721 Rosa chinensis HOM05D005656 ORTHO05D007094 4.4e-42 175.3 104 84.6
SGA_v2.0_scaffold135G34966 Striga asiatica HOM05D005656 ORTHO05D007094 4.4e-42 175.3 97 90.7
Potri.017G066500 Populus trichocarpa HOM05D005656 ORTHO05D007094 5.7e-42 174.9 104 85.6
PGSC0003DMG400006974 Solanum tuberosum HOM05D005656 ORTHO05D007094 5.7e-42 174.9 104 83.7
TWI36G1388 Tripterygium wilfordii HOM05D005656 ORTHO05D007094 5.7e-42 174.9 104 85.6
Solyc02g068050.4 Solanum lycopersicum HOM05D005656 ORTHO05D007094 7.5e-42 174.5 104 83.7
Cfa007258 Carpinus fangiana HOM05D005656 ORTHO05D007094 9.7e-42 174.1 104 84.6
TAR371G0943 Trochodendron aralioides HOM05D005656 ORTHO05D007094 9.7e-42 174.1 97 93.8
AL6G24940 Arabidopsis lyrata HOM05D005656 ORTHO05D007094 1.3e-41 173.7 98 88.8
Gohir.A11G064700 Gossypium hirsutum HOM05D005656 ORTHO05D007094 1.3e-41 173.7 104 83.7
Phvul.004G056200 Phaseolus vulgaris HOM05D005656 ORTHO05D007094 1.3e-41 173.7 104 81.7
TAR374G1035 Trochodendron aralioides HOM05D005656 ORTHO05D007094 1.3e-41 173.7 104 84.6
CANSAT64G1678 Cannabis sativa HOM05D005656 ORTHO05D007094 1.7e-41 173.3 104 83.7
Nitab4.5_0000040g0420 Nicotiana tabacum HOM05D005656 ORTHO05D007094 1.7e-41 173.3 104 82.7
Nitab4.5_0002911g0050 Nicotiana tabacum HOM05D005656 ORTHO05D007094 1.7e-41 173.3 104 82.7
Ah.04g163580 Amaranthus hybridus HOM05D005656 ORTHO05D007094 2.2e-41 172.9 111 78.4
MELO3C014861.2 Cucumis melo HOM05D005656 ORTHO05D007094 2.2e-41 172.9 97 86.6
Dinv33371 Davidia involucrata HOM05D005656 ORTHO05D007094 2.2e-41 172.9 104 83.7
FvH4_6g52980 Fragaria vesca HOM05D005656 ORTHO05D007094 2.2e-41 172.9 104 83.7
FAN02G0407 Fragaria x ananassa HOM05D005656 ORTHO05D007094 2.2e-41 172.9 104 83.7
FAN14G1288 Fragaria x ananassa HOM05D005656 ORTHO05D007094 2.2e-41 172.9 104 83.7
Lalb_Chr06g0174321 Lupinus albus HOM05D005656 ORTHO05D007094 2.2e-41 172.9 104 84.6
BcaNung03171 Brassica carinata HOM05D005656 ORTHO05D007094 2.8e-41 172.6 98 86.7
Lju41A49G67 Lonicera japonica HOM05D005656 ORTHO05D007094 3.7e-41 172.2 104 85.6
Sc03g0006840 Simmondsia chinensis HOM05D005656 ORTHO05D007094 3.7e-41 172.2 134 67.9
TAR362G1284 Trochodendron aralioides HOM05D005656 ORTHO05D007094 3.7e-41 172.2 99 88.9
Cc07_g00550 Coffea canephora HOM05D005656 ORTHO05D007094 4.8e-41 171.8 104 81.7
Rhsim10G0009000 Rhododendron simsii HOM05D005656 ORTHO05D007094 4.8e-41 171.8 104 83.7
CAN.G1780.2 Capsicum annuum HOM05D005656 ORTHO05D007094 6.3e-41 171.4 104 82.7
MD09G1015500 Malus domestica HOM05D005656 ORTHO05D007094 6.3e-41 171.4 104 82.7
Aa31LG11G15050 Aethionema arabicum HOM05D005656 ORTHO05D007094 1.1e-40 170.6 104 82.7
MD17G1015800 Malus domestica HOM05D005656 ORTHO05D007094 1.1e-40 170.6 104 81.7
CSS0001925 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 1.4e-40 170.2 104 81.7
CSS0043551 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 1.4e-40 170.2 104 81.7
ECA232G3800 Erigeron canadensis HOM05D005656 ORTHO05D007094 1.4e-40 170.2 104 80.8
Glyma.05G074800 Glycine max HOM05D005656 ORTHO05D007094 1.4e-40 170.2 104 80.8
Glyma.19G076300 Glycine max HOM05D005656 ORTHO05D007094 1.4e-40 170.2 104 80.8
HanXRQChr09g0256021 Helianthus annuus HOM05D005656 ORTHO05D007094 1.8e-40 169.9 104 79.8
Lsat_1_v5_gn_4_185500 Lactuca sativa HOM05D005656 ORTHO05D007094 1.8e-40 169.9 128 67.2
Lj2g0013537 Lotus japonicus HOM05D005656 ORTHO05D007094 2.4e-40 169.5 104 80.8
Medtr6g023320 Medicago truncatula HOM05D005656 ORTHO05D007094 4.1e-40 168.7 104 81.7
Sed0022605 Sechium edule HOM05D005656 ORTHO05D007094 4.1e-40 168.7 104 80.8
Hund06758 Selenicereus undatus HOM05D005656 ORTHO05D007094 5.3e-40 168.3 104 79.8
Atru.chr6.2507 Acer truncatum HOM05D005656 ORTHO05D007094 7.0e-40 167.9 104 80.8
Psat1g084760 Pisum sativum HOM05D005656 ORTHO05D007094 1.6e-39 166.8 104 80.8
Sabra17G0061100 Salix brachista HOM05D005656 ORTHO05D007094 1.6e-39 166.8 98 86.7
Peaxi162Scf00080g00211 Petunia axillaris HOM05D005656 ORTHO05D007094 4.5e-39 165.2 97 82.5
Aqoxy5G03503 Aquilegia oxysepala HOM05D005656 ORTHO05D007094 5.9e-39 164.9 104 79.8
PSO782G5211 Papaver somniferum HOM05D005656 ORTHO05D007094 5.5e-37 158.3 106 75.5
PSO063G4854 Papaver somniferum HOM05D005656 ORTHO05D007094 9.4e-37 157.5 106 75.5
Ca_04416_v3 Cicer arietinum L. HOM05D005656 ORTHO05D007094 1.4e-35 153.7 125 68.0
Haze_14830 Corylus avellana HOM05D005656 ORTHO05D007094 6.8e-35 151.4 148 58.8
TPR.G7527 Trifolium pratense HOM05D005656 ORTHO05D007094 8.8e-35 151.0 82 91.5
AagrBONN_evm.TU.Sc2ySwM_117.3449 Anthoceros agrestis HOM05D005656 ORTHO05D007094 3.4e-34 149.1 98 78.6
Pp3c10_18400 Physcomitrium patens HOM05D005656 ORTHO05D007094 4.8e-33 145.2 98 76.5
Pp3c3_30340 Physcomitrium patens HOM05D005656 ORTHO05D007094 8.3e-33 144.4 98 76.5
Mapoly0008s0037 Marchantia polymorpha HOM05D005656 ORTHO05D007094 1.1e-32 144.1 154 54.5
SMO164G0150 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 2.4e-32 142.9 98 77.6
CBR_g368 Chara braunii HOM05D005656 ORTHO05D007094 2.0e-31 139.8 113 65.5
Os12g0236900 Oryza sativa ssp. japonica HOM05D005656 ORTHO05D007094 1.0e-30 137.5 101 71.3
DCAR_002954 Daucus carota HOM05D005656 ORTHO05D007094 6.5e-30 134.8 154 53.9
Zm00001eb359140 Zea mays HOM05D005656 ORTHO05D007094 1.9e-29 133.3 101 71.3
Zm00001eb158830 Zea mays HOM05D005656 ORTHO05D007094 5.5e-29 131.7 101 71.3
BcaC03g13504 Brassica carinata HOM05D005656 ORTHO05D007094 2.1e-28 129.8 71 93.0
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 2.1e-28 129.8 71 93.0
CDE02G1600 Ceratophyllum demersum HOM05D005656 ORTHO05D007094 6.8e-27 124.8 104 67.3
AUR62041797 Chenopodium quinoa HOM05D005656 ORTHO05D007094 4.4e-26 122.1 70 85.7
C02p06650 Brassica napus HOM05D005656 ORTHO05D007094 5.7e-26 121.7 77 84.4
Actinidia36179 Actinidia chinensis HOM05D005656 ORTHO05D007094 1.2e-23 114.0 64 89.1
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 3.6e-20 102.4 98 61.2
BcaB08g36978 Brassica carinata HOM05D005656 ORTHO05D007094 3.6e-20 102.4 98 61.2
SEGI_35933 Sequoiadendron giganteum HOM05D005656 ORTHO05D007094 3.7e-17 92.4 67 70.1
AUR62041263 Chenopodium quinoa HOM05D005656 ORTHO05D007094 5.0e-14 82.0 48 83.3
PRCOL_00004951 Prasinoderma coloniale HOM05D005656 ORTHO05D007094 1.2e-12 77.4 75 52.0
BolC9t59026H Brassica oleracea HOM05D005656 ORTHO05D007094 8.6e-06 54.7 45 68.9


User provided reference genes

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