Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 4.0e-170 601.3 295 100.0
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 4.5e-121 438.3 300 74.0
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 2.3e-120 436.0 298 75.5
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.2e-118 430.3 299 71.6
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 6.1e-118 427.9 302 73.5
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 2.8e-115 419.1 298 71.8
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 4.1e-114 415.2 306 70.9
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 3.5e-113 412.1 299 69.2
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 3.3e-111 405.6 301 70.1
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 1.0e-109 400.6 294 68.0
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 8.9e-109 397.5 260 80.4
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 3.4e-108 395.6 296 68.9
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 5.8e-108 394.8 306 67.3
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 5.8e-108 394.8 296 68.2
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 1.7e-107 393.3 298 69.5
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.9e-107 392.5 293 69.3
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 8.3e-107 391.0 308 66.9
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 1.1e-106 390.6 298 67.8
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.1e-106 390.6 308 67.2
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 1.9e-106 389.8 236 78.8
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.2e-106 389.0 293 68.9
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 4.1e-106 388.7 296 68.2
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 1.2e-105 387.1 311 65.3
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 1.6e-105 386.7 294 69.0
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 2.0e-105 386.3 299 67.2
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 4.6e-105 385.2 301 65.1
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 6.0e-105 384.8 298 65.1
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 7.8e-105 384.4 309 65.0
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 1.0e-104 384.0 307 64.2
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.0e-104 384.0 308 67.2
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.3e-104 382.9 312 67.0
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 5.0e-104 381.7 302 65.2
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 1.1e-103 380.6 301 66.4
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 2.5e-103 379.4 281 72.6
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 5.6e-103 378.3 307 63.5
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 7.3e-103 377.9 296 64.9
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 2.8e-102 375.9 293 64.5
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 2.8e-102 375.9 303 62.4
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 8.0e-102 374.4 312 64.1
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 1.1e-101 374.0 294 66.7
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 1.8e-101 373.2 319 62.7
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.8e-101 373.2 296 67.6
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 3.1e-101 372.5 292 64.4
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 4.0e-101 372.1 279 67.7
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 2.0e-100 369.8 235 78.3
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 2.0e-100 369.8 293 63.5
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 2.6e-100 369.4 293 62.8
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 3.4e-100 369.0 299 63.5
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 9.8e-100 367.5 293 62.8
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 1.3e-99 367.1 298 63.8
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 1.7e-99 366.7 202 83.7
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 1.7e-99 366.7 295 65.8
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 6.4e-99 364.8 294 64.3
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 1.1e-98 364.0 254 71.7
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 1.1e-98 364.0 207 80.2
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 1.4e-98 363.6 295 62.7
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.4e-98 362.8 289 67.8
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 2.4e-98 362.8 216 76.9
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 3.2e-98 362.5 212 79.7
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 4.1e-98 362.1 293 62.5
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 4.1e-98 362.1 295 62.4
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 4.6e-97 358.6 248 71.4
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 6.0e-97 358.2 279 68.5
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 7.8e-97 357.8 202 81.2
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 1.0e-96 357.5 229 74.2
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 1.3e-96 357.1 293 61.8
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 1.7e-96 356.7 275 65.5
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 3.9e-96 355.5 294 61.9
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 5.1e-96 355.1 292 62.7
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 5.1e-96 355.1 292 62.7
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 6.6e-96 354.8 301 64.1
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-95 353.6 292 62.7
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 2.5e-95 352.8 294 61.6
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 4.3e-95 352.1 307 60.3
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 7.3e-95 351.3 251 69.3
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 2.1e-94 349.7 288 66.3
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 2.8e-94 349.4 294 61.2
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 8.1e-94 347.8 294 60.9
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 2.3e-93 346.3 304 60.9
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 3.1e-93 345.9 217 74.7
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 5.2e-93 345.1 217 75.1
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 6.8e-93 344.7 217 75.1
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 1.2e-92 344.0 278 68.0
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 1.5e-92 343.6 281 64.8
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 1.7e-91 340.1 301 59.1
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 2.2e-91 339.7 303 59.1
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 4.9e-91 338.6 296 62.2
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 1.1e-90 337.4 295 62.0
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 3.2e-90 335.9 294 60.2
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 5.4e-90 335.1 292 58.6
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 2.7e-89 332.8 302 58.6
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 2.3e-88 329.7 259 67.2
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 6.6e-88 328.2 276 62.0
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 6.6e-88 328.2 333 57.4
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.2e-86 323.9 291 58.4
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 7.6e-84 314.7 274 60.6
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 2.9e-83 312.8 198 70.7
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 4.9e-83 312.0 272 61.4
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 3.2e-82 309.3 275 59.3
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 9.2e-82 307.8 275 58.5
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 3.0e-80 302.8 195 69.7
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.8e-77 293.5 206 68.0
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 4.0e-77 292.4 159 86.2
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 9.9e-76 287.7 156 85.3
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 1.7e-75 287.0 229 60.7
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 6.4e-75 285.0 156 82.1
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 7.1e-74 281.6 151 86.1
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 2.1e-73 280.0 275 56.7
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 6.0e-73 278.5 156 82.1
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 9.0e-69 264.6 199 62.8
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.3e-67 260.8 297 54.2
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 1.6e-62 243.8 334 45.5
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 2.1e-62 243.4 136 83.8
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 1.5e-60 237.3 252 47.6
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 1.3e-59 234.2 123 90.2
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 3.0e-56 223.0 287 47.4
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 8.7e-56 221.5 138 75.4
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 2.5e-55 219.9 123 85.4
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 2.0e-52 210.3 198 48.0
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 1.2e-49 201.1 200 53.0
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 1.3e-48 197.6 119 79.0
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 4.8e-46 189.1 133 67.7
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 1.4e-45 187.6 111 75.7
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 6.9e-45 185.3 141 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 1.0e-43 181.4 143 61.5
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 4.2e-42 176.0 115 74.8
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 4.2e-42 176.0 115 74.8
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 6.1e-33 145.6 157 51.0
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 7.9e-33 145.2 90 78.9
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 3.0e-32 143.3 198 36.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.4e-29 134.4 78 79.5
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 8.8e-24 115.2 77 71.4
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 8.2e-22 108.6 112 55.4
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 1.7e-19 100.9 107 54.2
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 7.2e-18 95.5 155 35.5
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 2.0e-15 87.4 63 65.1
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.6e-09 67.8 130 43.1
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 4.0e-08 63.2 165 27.9
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 1.5e-07 61.2 166 28.9
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 2.6e-07 60.5 202 26.7
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 2.6e-07 60.5 166 27.7
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 2.6e-07 60.5 166 27.7
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 2.6e-07 60.5 166 27.7
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.4e-07 60.1 211 26.1
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 7.5e-07 58.9 212 25.0
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 9.8e-07 58.5 170 27.6
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 9.8e-07 58.5 160 30.6
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 9.8e-07 58.5 160 30.6
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 1.7e-06 57.8 172 26.7
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 1.7e-06 57.8 102 37.3
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 2.2e-06 57.4 173 28.3
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 2.2e-06 57.4 171 26.9
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 2.2e-06 57.4 173 28.3
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 2.2e-06 57.4 95 36.8
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.8e-06 57.0 108 33.3
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 3.7e-06 56.6 173 28.3
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 3.7e-06 56.6 173 28.3
Migut.J01169 Erythranthe guttata HOM05D004174 ORTHO05D004624 3.7e-06 56.6 172 26.7
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 3.7e-06 56.6 133 29.3
MBI04_g24208_MAGBIO Magnolia biondii HOM05D004174 ORTHO05D004624 4.8e-06 56.2 100 39.0
Aa31LG8G2170 Aethionema arabicum HOM05D004174 ORTHO05D004624 6.3e-06 55.8 173 28.9
ClCG11G002850 Citrullus lanatus HOM05D004174 ORTHO05D004624 6.3e-06 55.8 98 34.7
MELO3C004525.2 Cucumis melo HOM05D004174 ORTHO05D004624 6.3e-06 55.8 98 34.7


User provided reference genes

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