Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0864 Trochodendron aralioides HOM05D002923 ORTHO05D025743 3.4e-112 409.1 341 100.0
TAR369G0530 Trochodendron aralioides HOM05D002923 ORTHO05D003484 1.4e-78 297.4 334 84.7
Haze_20942 Corylus avellana HOM05D002923 ORTHO05D003484 2.4e-57 226.9 334 55.1
Cfa017260 Carpinus fangiana HOM05D002923 ORTHO05D003484 4.1e-57 226.1 334 55.4
Dinv37086 Davidia involucrata HOM05D002923 ORTHO05D003484 9.1e-57 224.9 331 74.6
CSS0024926 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 1.7e-55 220.7 331 71.0
CDE03G0020 Ceratophyllum demersum HOM05D002923 ORTHO05D003484 1.0e-52 211.5 284 64.8
Ciclev10011119m.g Citrus clementina HOM05D002923 ORTHO05D003484 4.0e-52 209.5 283 48.8
TWI53G0230 Tripterygium wilfordii HOM05D002923 ORTHO05D003484 4.0e-52 209.5 331 58.6
Manes.08G087100 Manihot esculenta HOM05D002923 ORTHO05D003484 5.2e-52 209.1 280 47.5
Dinv28596 Davidia involucrata HOM05D002923 ORTHO05D003484 8.8e-52 208.4 283 70.7
Hma1.2p1_0244F.1_g101180 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 3.4e-51 206.5 332 69.3
MBI05_g03437_MAGBIO Magnolia biondii HOM05D002923 ORTHO05D003484 7.5e-51 205.3 283 68.6
TWI74G0041 Tripterygium wilfordii HOM05D002923 ORTHO05D003484 1.4e-49 201.1 334 41.9
Cpa.g.sc56.107 Carica papaya HOM05D002923 ORTHO05D003484 3.1e-49 199.9 283 45.2
Sed0008698 Sechium edule HOM05D002923 ORTHO05D003484 2.2e-47 193.7 279 51.3
Thecc.05G023000 Theobroma cacao HOM05D002923 ORTHO05D003484 6.5e-47 192.2 336 57.1
Sed0027710 Sechium edule HOM05D002923 ORTHO05D003484 2.5e-46 190.3 283 49.8
ClCG04G007280 Citrullus lanatus HOM05D002923 ORTHO05D003484 9.5e-46 188.3 284 46.5
Manes.09G101700 Manihot esculenta HOM05D002923 ORTHO05D003484 2.1e-45 187.2 283 45.2
PSO384G4499 Papaver somniferum HOM05D002923 ORTHO05D003484 2.6e-43 180.3 282 61.7
PSO339G5831 Papaver somniferum HOM05D002923 ORTHO05D003484 9.8e-43 178.3 279 61.6
Nn2g14845 Nelumbo nucifera HOM05D002923 ORTHO05D003484 1.7e-42 177.6 334 49.1
PGR004G1301 Punica granatum HOM05D002923 ORTHO05D003484 1.7e-42 177.6 279 41.9
RcHm_v2.0_Chr3g0463941 Rosa chinensis HOM05D002923 ORTHO05D003484 2.8e-42 176.8 334 51.5
FAN09G2253 Fragaria x ananassa HOM05D002923 ORTHO05D003484 3.1e-41 173.3 334 50.3
FAN02G1394 Fragaria x ananassa HOM05D002923 ORTHO05D003484 4.1e-41 172.9 334 49.4
CANSAT35G0533 Cannabis sativa HOM05D002923 ORTHO05D003484 5.4e-41 172.6 331 49.2
FvH4_6g12150 Fragaria vesca HOM05D002923 ORTHO05D003484 7.0e-41 172.2 334 50.3
FAN14G3461 Fragaria x ananassa HOM05D002923 ORTHO05D003484 7.0e-41 172.2 334 50.3
FAN14G4981 Fragaria x ananassa HOM05D002923 ORTHO05D003484 7.0e-41 172.2 334 50.3
FAN05G4887 Fragaria x ananassa HOM05D002923 ORTHO05D003484 2.7e-40 170.2 334 49.7
MELO3C003221.2 Cucumis melo HOM05D002923 ORTHO05D003484 5.9e-40 169.1 284 43.0
Aqoxy1G00729 Aquilegia oxysepala HOM05D002923 ORTHO05D003484 8.6e-39 165.2 318 39.9
Sabra16G0107100 Salix brachista HOM05D002923 ORTHO05D003484 8.6e-39 165.2 278 43.5
AUR62037670 Chenopodium quinoa HOM05D002923 ORTHO05D003484 2.5e-38 163.7 280 39.6
AUR62042410 Chenopodium quinoa HOM05D002923 ORTHO05D003484 7.3e-38 162.2 280 39.6
CsaV3_4G025950 Cucumis sativus L. HOM05D002923 ORTHO05D003484 1.6e-37 161.0 283 55.8
Cc06_g01720 Coffea canephora HOM05D002923 ORTHO05D003484 8.0e-37 158.7 334 48.2
AUR62041363 Chenopodium quinoa HOM05D002923 ORTHO05D003484 4.0e-36 156.4 279 38.0
Eucgr.B02770 Eucalyptus grandis HOM05D002923 ORTHO05D003484 4.0e-36 156.4 285 36.5
Eucgr.B02769 Eucalyptus grandis HOM05D002923 ORTHO05D003484 5.2e-36 156.0 331 42.6
Potri.006G095800 Populus trichocarpa HOM05D002923 ORTHO05D003484 1.2e-35 154.8 270 41.5
Prupe.6G270200 Prunus persica HOM05D002923 ORTHO05D003484 3.4e-35 153.3 334 48.2
SalBow1G6626 Salvia bowleyana HOM05D002923 ORTHO05D003484 3.4e-35 153.3 279 39.4
SalBow5G5371 Salvia bowleyana HOM05D002923 ORTHO05D003484 7.5e-35 152.1 279 39.4
DCAR_015460 Daucus carota HOM05D002923 ORTHO05D003484 2.2e-34 150.6 285 38.9
Oeu028727.1 Olea europaea HOM05D002923 ORTHO05D003484 2.9e-34 150.2 283 39.2
Gohir.D13G092201 Gossypium hirsutum HOM05D002923 ORTHO05D003484 3.7e-34 149.8 339 49.3
CSS0010473 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 4.9e-34 149.4 227 65.6
Lj1g0012741 Lotus japonicus HOM05D002923 ORTHO05D003484 6.4e-34 149.1 283 38.2
arahy.Tifrunner.gnm1.ann1.70V125 Arachis hypogaea HOM05D002923 ORTHO05D003484 1.1e-33 148.3 283 46.6
Nitab4.5_0006254g0020 Nicotiana tabacum HOM05D002923 ORTHO05D003484 2.4e-33 147.1 284 44.7
DCAR_018734 Daucus carota HOM05D002923 ORTHO05D003484 3.2e-33 146.7 284 37.7
Dinv35516 Davidia involucrata HOM05D002923 ORTHO05D003484 4.1e-33 146.4 335 61.8
Thhalv10016287m.g Eutrema salsugineum HOM05D002923 ORTHO05D003484 5.4e-33 146.0 262 53.4
arahy.Tifrunner.gnm1.ann1.45ZUWH Arachis hypogaea HOM05D002923 ORTHO05D003484 9.2e-33 145.2 283 46.3
CiPaw.10G154100 Carya illinoinensis HOM05D002923 ORTHO05D003484 9.2e-33 145.2 333 45.9
Duzib093G0767 Durio zibethinus HOM05D002923 ORTHO05D003484 1.2e-32 144.8 336 44.6
Lalb_Chr01g0022891 Lupinus albus HOM05D002923 ORTHO05D003484 3.5e-32 143.3 291 34.4
Nitab4.5_0000008g0600 Nicotiana tabacum HOM05D002923 ORTHO05D003484 5.9e-32 142.5 284 40.1
Oeu040801.1 Olea europaea HOM05D002923 ORTHO05D003484 7.8e-32 142.1 282 38.3
Peaxi162Scf00141g00125 Petunia axillaris HOM05D002923 ORTHO05D003484 1.0e-31 141.7 279 55.9
CARHR132610 Cardamine hirsuta HOM05D002923 ORTHO05D003484 3.9e-31 139.8 266 47.0
Sc01g0006730 Simmondsia chinensis HOM05D002923 ORTHO05D003484 3.9e-31 139.8 267 36.0
Hma1.2p1_0452F.1_g155840 Hydrangea macrophylla HOM05D002923 ORTHO05D003484 1.5e-30 137.9 201 61.2
Gohir.A13G086290 Gossypium hirsutum HOM05D002923 ORTHO05D003484 1.9e-30 137.5 339 47.2
Nn2g13595 Nelumbo nucifera HOM05D002923 ORTHO05D003484 9.5e-30 135.2 284 50.7
MSTRG.26796 Avicennia marina HOM05D002923 ORTHO05D003484 1.6e-29 134.4 278 36.0
CAN.G284.8 Capsicum annuum HOM05D002923 ORTHO05D003484 2.1e-29 134.0 279 36.9
Sopen09g006920 Solanum pennellii HOM05D002923 ORTHO05D003484 2.8e-29 133.7 284 49.3
Potri.016G110500 Populus trichocarpa HOM05D002923 ORTHO05D003484 1.4e-28 131.3 270 38.5
Lalb_Chr03g0042951 Lupinus albus HOM05D002923 ORTHO05D003484 2.3e-28 130.6 283 32.9
SalBow5G1337 Salvia bowleyana HOM05D002923 ORTHO05D003484 3.1e-28 130.2 290 35.2
AT2G38040 Arabidopsis thaliana HOM05D002923 ORTHO05D003484 4.0e-28 129.8 261 47.5
Actinidia29136 Actinidia chinensis HOM05D002923 ORTHO05D003484 5.2e-28 129.4 307 45.3
Gohir.D04G128300 Gossypium hirsutum HOM05D002923 ORTHO05D003484 5.2e-28 129.4 268 48.9
Gorai.012G111400 Gossypium raimondii HOM05D002923 ORTHO05D003484 5.2e-28 129.4 282 47.5
Sabra06G0073700 Salix brachista HOM05D002923 ORTHO05D003484 5.2e-28 129.4 269 36.8
Gohir.A04G087900 Gossypium hirsutum HOM05D002923 ORTHO05D003484 1.5e-27 127.9 283 47.3
Gorai.002G148400 Gossypium raimondii HOM05D002923 ORTHO05D003484 2.0e-27 127.5 339 49.0
BcaB02g09223 Brassica carinata HOM05D002923 ORTHO05D003484 2.6e-27 127.1 269 47.6
HanXRQChr15g0463991 Helianthus annuus HOM05D002923 ORTHO05D003484 4.4e-27 126.3 285 35.8
CDE04G0231 Ceratophyllum demersum HOM05D002923 ORTHO05D003484 5.8e-27 125.9 283 54.1
Duzib128G0471 Durio zibethinus HOM05D002923 ORTHO05D003484 9.8e-27 125.2 336 42.3
Actinidia13785 Actinidia chinensis HOM05D002923 ORTHO05D003484 2.2e-26 124.0 306 48.4
AL4G35040 Arabidopsis lyrata HOM05D002923 ORTHO05D003484 2.2e-26 124.0 261 49.0
Hma1.2p1_0070F.1_g037600 Hydrangea macrophylla HOM05D002923 ORTHO05D025743 2.9e-26 123.6 284 37.7
COL.COLO4_14614 Corchorus olitorius HOM05D002923 ORTHO05D003484 4.9e-26 122.9 326 31.3
Migut.L01991 Erythranthe guttata HOM05D002923 ORTHO05D003484 8.3e-26 122.1 284 35.2
Solyc09g013080.3 Solanum lycopersicum HOM05D002923 ORTHO05D003484 1.4e-25 121.3 285 34.4
Sp4g20360 Schrenkiella parvula HOM05D002923 ORTHO05D003484 3.2e-25 120.2 261 49.0
THA.LOC104805781 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 3.2e-25 120.2 272 47.1
Ca_26813_v3 Cicer arietinum L. HOM05D002923 ORTHO05D003484 4.6e-24 116.3 286 33.9
TPR.G1591 Trifolium pratense HOM05D002923 ORTHO05D003484 4.6e-24 116.3 284 32.4
Migut.J00231 Erythranthe guttata HOM05D002923 ORTHO05D003484 6.0e-24 115.9 280 34.6
MD04G1146400 Malus domestica HOM05D002923 ORTHO05D003484 7.8e-24 115.5 279 38.7
Carub.0004s2001 Capsella rubella HOM05D002923 ORTHO05D003484 3.9e-23 113.2 261 48.3
VMungo1383G3014 Vigna mungo HOM05D002923 ORTHO05D003484 8.6e-23 112.1 263 32.3
MSTRG.19035 Avicennia marina HOM05D002923 ORTHO05D003484 1.1e-22 111.7 279 33.3
Lsat_1_v5_gn_9_35780 Lactuca sativa HOM05D002923 ORTHO05D003484 1.1e-22 111.7 284 32.4
BraA03t11342Z Brassica rapa HOM05D002923 ORTHO05D003484 1.9e-22 110.9 262 40.8
BcaC01g05570 Brassica carinata HOM05D002923 ORTHO05D003484 3.3e-22 110.2 262 43.1
C03p24770 Brassica napus HOM05D002923 ORTHO05D003484 3.3e-22 110.2 262 43.1
BolC3t14866H Brassica oleracea HOM05D002923 ORTHO05D003484 3.3e-22 110.2 262 43.1
PGSC0003DMG400020325 Solanum tuberosum HOM05D002923 ORTHO05D003484 5.6e-22 109.4 284 32.0
HanXRQChr10g0286971 Helianthus annuus HOM05D002923 ORTHO05D003484 3.6e-21 106.7 284 33.1
Aa31LG5G23670 Aethionema arabicum HOM05D002923 ORTHO05D003484 4.7e-21 106.3 215 36.7
Lalb_Chr19g0124821 Lupinus albus HOM05D002923 ORTHO05D025743 8.1e-21 105.5 135 42.2
Phvul.008G108700 Phaseolus vulgaris HOM05D002923 ORTHO05D003484 1.8e-20 104.4 291 29.6
Ah.12g060020 Amaranthus hybridus HOM05D002923 ORTHO05D003484 4.0e-20 103.2 279 30.8
unitig_578.g15891 Utricularia gibba HOM05D002923 ORTHO05D003484 1.2e-19 101.7 263 54.8
ECA247G2565 Erigeron canadensis HOM05D002923 ORTHO05D003484 1.5e-19 101.3 284 31.7
MD12G1159600 Malus domestica HOM05D002923 ORTHO05D003484 9.9e-19 98.6 282 37.9
Glyma.18G195900 Glycine max HOM05D002923 ORTHO05D003484 1.7e-18 97.8 272 32.0
A05p07970 Brassica napus HOM05D002923 ORTHO05D003484 2.9e-18 97.1 256 34.0
BcaB01g03731 Brassica carinata HOM05D002923 ORTHO05D003484 4.9e-18 96.3 262 30.2
BcaC02g11947 Brassica carinata HOM05D002923 ORTHO05D003484 1.4e-17 94.7 213 46.0
C04p09620 Brassica napus HOM05D002923 ORTHO05D003484 1.4e-17 94.7 213 46.0
BolC4t22569H Brassica oleracea HOM05D002923 ORTHO05D003484 1.4e-17 94.7 213 46.0
CiPaw.09G205400 Carya illinoinensis HOM05D002923 ORTHO05D003484 4.1e-17 93.2 245 39.2
Glyma.18G196000 Glycine max HOM05D002923 ORTHO05D003484 1.2e-16 91.7 267 31.8
Glyma.18G195700 Glycine max HOM05D002923 ORTHO05D003484 1.6e-16 91.3 271 30.6
HanXRQChr10g0291431 Helianthus annuus HOM05D002923 ORTHO05D003484 1.0e-15 88.6 217 31.3
Medtr7g066870 Medicago truncatula HOM05D002923 ORTHO05D003484 1.0e-15 88.6 272 30.5
GSVIVG01034017001 Vitis vinifera HOM05D002923 ORTHO05D003484 1.3e-15 88.2 72 68.1
GSVIVG01003458001 Vitis vinifera HOM05D002923 ORTHO05D025743 3.0e-15 87.0 83 60.2
THA.LOC104806526 Tarenaya hassleriana HOM05D002923 ORTHO05D003484 1.2e-13 81.6 268 29.5
Atru.chr8.2139 Acer truncatum HOM05D002923 ORTHO05D003484 1.4e-12 78.2 70 61.4
Psat0s1978g0280 Pisum sativum HOM05D002923 ORTHO05D003484 4.4e-11 73.2 171 36.3
SalBow5G3414 Salvia bowleyana HOM05D002923 ORTHO05D003484 5.8e-11 72.8 69 59.4
Rhsim05G0205300 Rhododendron simsii HOM05D002923 ORTHO05D003484 4.9e-10 69.7 259 29.7
EL10Ac7g17118 Beta vulgaris HOM05D002923 ORTHO05D003484 3.2e-09 67.0 65 55.4
Lalb_Chr19g0124831 Lupinus albus HOM05D002923 ORTHO05D003484 4.1e-09 66.6 70 55.7
SGA_v2.0_scaffold106G30526 Striga asiatica HOM05D002923 ORTHO05D003484 9.2e-09 65.5 165 35.8
A03p21030 Brassica napus HOM05D002923 ORTHO05D003484 3.5e-08 63.5 261 39.8
CSS0015910 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 7.8e-08 62.4 146 34.2
Duzib138G0954 Durio zibethinus HOM05D002923 ORTHO05D003484 1.3e-07 61.6 147 36.1
CSS0019607 Camellia sinensis var. sinensis HOM05D002923 ORTHO05D003484 1.1e-06 58.5 261 26.1
BraA05t19762Z Brassica rapa HOM05D002923 ORTHO05D003484 1.9e-06 57.8 256 25.0
Haze_15468 Corylus avellana HOM05D002923 ORTHO05D003484 1.9e-06 57.8 135 37.8
GSVIVG01026852001 Vitis vinifera HOM05D002923 ORTHO05D003484 3.3e-06 57.0 146 35.6
GSVIVG01003465001 Vitis vinifera HOM05D002923 ORTHO05D025743 4.3e-06 56.6 45 60.0


User provided reference genes

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