Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.3e-151 538.9 280 100.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 9.2e-132 473.8 283 86.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.5e-121 439.1 283 79.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.2e-118 430.3 284 79.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 5.8e-118 427.9 280 78.6
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.7e-117 426.4 280 78.2
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.2e-117 426.0 278 79.9
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.1e-116 423.7 291 74.9
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.1e-116 423.7 279 76.3
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.2e-115 420.2 282 75.5
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 7.9e-115 417.5 292 74.3
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.0e-114 417.2 288 75.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.3e-114 416.8 285 76.5
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.8e-114 416.4 308 70.8
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 5.1e-114 414.8 273 76.9
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 6.7e-114 414.5 259 81.1
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 8.7e-114 414.1 284 76.8
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-113 413.3 280 75.4
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.5e-113 413.3 286 76.2
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.3e-113 412.1 268 80.6
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.3e-113 412.1 281 77.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 5.6e-113 411.4 244 84.4
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 9.6e-113 410.6 261 79.3
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 9.6e-113 410.6 276 74.6
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.3e-112 410.2 288 74.7
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 2.8e-112 409.1 286 73.1
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 2.8e-112 409.1 287 74.2
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 3.7e-112 408.7 290 72.4
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.8e-112 408.3 285 73.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 6.2e-112 407.9 271 78.6
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.1e-111 407.1 294 72.1
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.1e-111 407.1 289 73.7
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 4.0e-111 405.2 291 75.3
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.3e-111 404.8 268 78.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 9.0e-111 404.1 267 77.5
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.2e-110 403.7 276 76.4
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 2.0e-110 402.9 267 78.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.6e-110 402.5 286 72.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 3.4e-110 402.1 270 78.5
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.4e-110 402.1 283 73.9
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 4.5e-110 401.7 285 72.6
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 2.2e-109 399.4 244 80.7
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 1.1e-108 397.1 280 72.9
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.4e-108 396.7 285 71.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.9e-108 396.4 285 72.6
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 2.5e-108 396.0 240 84.2
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.2e-108 395.6 293 71.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 3.2e-108 395.6 288 72.9
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 4.2e-108 395.2 289 71.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 4.2e-108 395.2 287 72.5
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 7.1e-108 394.4 304 67.8
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.7e-107 392.5 270 76.3
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.3e-106 390.2 282 72.3
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.3e-106 389.4 272 73.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.9e-106 388.7 300 68.0
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 8.7e-106 387.5 242 81.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 8.7e-106 387.5 305 68.5
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.3e-105 385.2 299 69.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 5.7e-105 384.8 292 72.9
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 7.4e-105 384.4 254 76.8
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 9.6e-105 384.0 280 70.4
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 9.6e-105 384.0 282 70.6
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 1.3e-104 383.6 282 71.3
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.3e-104 383.6 282 72.3
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-104 383.3 283 70.7
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.1e-104 382.9 283 70.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 3.7e-104 382.1 266 75.9
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 6.2e-104 381.3 241 80.1
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 8.2e-104 380.9 282 70.9
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 4.0e-103 378.6 298 65.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-102 377.1 278 70.9
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.5e-102 376.7 274 72.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.5e-102 376.7 275 72.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.6e-102 375.9 282 70.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 3.4e-102 375.6 223 84.8
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 7.6e-102 374.4 284 70.1
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 2.2e-101 372.9 278 70.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.9e-101 372.5 223 82.1
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.4e-100 370.2 278 69.8
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 7.9e-99 364.4 240 77.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 1.0e-98 364.0 279 69.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 6.7e-98 361.3 283 69.3
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 3.3e-97 359.0 241 75.5
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.8e-96 355.1 238 73.5
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 6.3e-96 354.8 283 68.9
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 8.2e-96 354.4 293 67.6
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.4e-95 353.6 287 64.1
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.7e-93 346.7 254 74.0
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.2e-92 342.0 253 70.4
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.2e-92 341.3 223 77.6
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 7.9e-91 337.8 242 70.2
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.1e-89 334.0 223 74.9
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 3.3e-89 332.4 335 57.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.3e-88 330.5 196 81.6
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.7e-88 330.1 198 85.4
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 1.0e-85 320.9 267 64.0
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 2.9e-85 319.3 278 62.2
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 8.8e-82 307.8 233 67.8
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 3.3e-81 305.8 172 86.0
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.4e-79 299.7 197 74.1
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 4.1e-79 298.9 229 68.1
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-76 290.4 285 58.6
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.5e-76 289.7 242 66.1
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 9.4e-76 287.7 268 57.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.3e-73 279.3 176 80.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 1.7e-72 276.9 357 48.5
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 7.7e-62 241.5 223 58.3
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 2.2e-61 240.0 229 52.4
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.8e-61 239.2 247 49.0
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.5e-60 237.3 215 54.0
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 4.1e-55 219.2 199 59.3
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 2.5e-52 209.9 306 45.1
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.8e-50 203.8 167 60.5
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.0e-47 191.8 133 77.4
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 4.9e-40 169.1 263 44.9
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 5.2e-34 149.1 91 78.0
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 5.4e-31 139.0 144 58.3
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.6e-30 137.5 120 62.5
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 5.6e-28 129.0 144 54.9
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-24 117.1 144 50.7
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.9e-24 116.7 170 42.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 4.9e-24 115.9 78 71.8
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.1e-23 114.8 135 52.6
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.6e-22 110.9 73 79.5
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-22 109.0 134 47.8
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-18 96.7 78 69.2
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 5.2e-18 95.9 59 78.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 8.9e-18 95.1 231 30.7
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.3e-16 91.3 50 82.0
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 1.3e-16 91.3 294 30.3
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 4.2e-15 86.3 143 39.2
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 7.1e-15 85.5 205 33.2
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-14 84.7 55 70.9
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-14 84.7 55 70.9
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 1.6e-14 84.3 93 51.6
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 2.1e-14 84.0 57 68.4
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.0e-13 81.6 102 47.1
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.7e-13 80.9 59 62.7
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 1.7e-13 80.9 89 52.8
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.3e-13 80.5 51 72.5
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 5.6e-12 75.9 83 56.6
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 2.4e-10 70.5 56 67.9
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 2.4e-10 70.5 93 45.2
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.4e-09 66.2 40 80.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 4.4e-09 66.2 221 23.5
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.7e-08 64.3 238 22.7
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.7e-08 64.3 234 22.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.7e-08 64.3 211 23.7
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 3.8e-08 63.2 220 23.6
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 3.8e-08 63.2 219 24.2
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.1e-07 61.6 221 23.5
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 5.4e-07 59.3 256 25.8
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 7.1e-07 58.9 224 23.2
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 9.3e-07 58.5 220 23.2
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 2.7e-06 57.0 216 21.8
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 2.7e-06 57.0 235 21.7


User provided reference genes

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