Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 8.0e-180 633.6 320 100.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 2.9e-137 492.3 305 81.6
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 2.9e-137 492.3 305 81.6
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 2.7e-135 485.7 308 80.2
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 2.7e-135 485.7 323 76.8
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 3.5e-135 485.3 318 77.4
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.0e-134 483.8 308 79.9
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 1.3e-134 483.4 314 79.0
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 5.1e-134 481.5 315 77.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 3.3e-133 478.8 306 77.8
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.6e-132 475.3 309 79.6
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 3.1e-131 472.2 275 85.1
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 5.2e-131 471.5 305 76.1
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 8.9e-131 470.7 332 75.0
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.5e-130 469.9 287 80.8
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.4e-130 468.8 332 74.7
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 3.4e-130 468.8 322 75.5
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 1.3e-129 466.8 322 75.5
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 2.9e-129 465.7 267 86.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.9e-129 465.7 329 73.9
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 1.1e-128 463.8 286 81.5
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 1.4e-128 463.4 274 82.8
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 7.1e-128 461.1 305 76.7
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 1.2e-127 460.3 305 76.1
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.1e-127 459.5 305 76.4
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 2.7e-127 459.1 313 73.5
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 3.5e-127 458.8 327 73.7
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 3.5e-127 458.8 323 73.7
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 6.0e-127 458.0 325 72.9
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 6.0e-127 458.0 285 79.3
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.9e-126 455.3 303 76.6
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 1.5e-125 453.4 308 75.0
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 1.9e-125 453.0 295 76.9
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 3.3e-125 452.2 285 78.9
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.3e-125 451.8 270 82.6
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 5.6e-125 451.4 305 75.4
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 7.3e-125 451.1 321 72.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 2.1e-124 449.5 305 75.1
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 2.1e-124 449.5 305 75.1
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 2.1e-124 449.5 319 72.4
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 2.1e-124 449.5 316 73.1
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 2.8e-124 449.1 318 73.6
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 2.8e-124 449.1 313 72.8
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 4.8e-124 448.4 300 75.3
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 6.2e-124 448.0 319 72.4
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 6.2e-124 448.0 317 71.9
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 8.1e-124 447.6 305 74.8
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 1.1e-123 447.2 313 72.8
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.8e-123 446.4 302 75.2
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 2.4e-123 446.0 283 78.1
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 4.0e-123 445.3 276 79.7
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 4.0e-123 445.3 315 72.1
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 9.0e-123 444.1 285 77.5
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.2e-122 443.7 273 80.2
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 1.5e-122 443.4 286 77.3
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 4.5e-122 441.8 277 79.4
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.8e-122 441.4 292 75.3
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 7.6e-122 441.0 275 80.7
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 1.7e-121 439.9 284 76.8
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 1.7e-121 439.9 315 71.7
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 1.7e-121 439.9 287 74.9
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 2.9e-121 439.1 311 72.7
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 3.8e-121 438.7 328 68.9
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 4.9e-121 438.3 282 76.2
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 4.9e-121 438.3 293 74.4
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 6.4e-121 438.0 315 71.1
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 6.4e-121 438.0 341 68.0
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 1.4e-120 436.8 329 69.6
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.9e-120 436.4 253 85.8
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 5.4e-120 434.9 297 73.4
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 9.3e-120 434.1 301 72.8
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 1.2e-119 433.7 266 79.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 6.0e-119 431.4 273 77.3
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.3e-118 430.3 268 78.7
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 1.3e-118 430.3 266 79.7
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 2.3e-118 429.5 284 75.4
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 3.0e-118 429.1 268 79.1
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 3.9e-118 428.7 292 74.0
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 3.9e-118 428.7 301 73.4
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 5.1e-118 428.3 266 78.9
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 6.7e-118 427.9 268 79.1
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 3.3e-117 425.6 266 77.4
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 5.6e-117 424.9 270 76.7
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 2.8e-116 422.5 284 74.6
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 4.8e-116 421.8 266 77.1
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 4.8e-116 421.8 259 79.2
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 4.8e-116 421.8 265 78.9
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.4e-115 420.2 269 77.3
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 4.9e-113 411.8 279 75.3
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.6e-111 406.8 379 59.9
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 3.5e-111 405.6 312 68.3
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 2.3e-110 402.9 295 70.8
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 5.1e-110 401.7 233 82.8
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.1e-109 400.6 264 73.9
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 1.5e-109 400.2 308 69.8
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 7.4e-109 397.9 268 71.6
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 1.3e-108 397.1 269 72.5
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.4e-107 393.7 258 75.6
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.2e-106 390.6 236 79.7
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 3.4e-106 389.0 258 76.0
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 4.5e-106 388.7 249 77.5
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.3e-105 387.1 291 67.4
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-104 384.0 249 77.1
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 2.5e-104 382.9 267 72.7
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 2.1e-103 379.8 246 77.2
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 6.7e-102 374.8 265 69.4
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 2.5e-101 372.9 298 67.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 7.4e-101 371.3 254 73.6
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 2.4e-99 366.3 265 67.2
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 2.2e-97 359.8 261 67.4
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 7.9e-95 351.3 251 71.7
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 3.9e-94 349.0 259 66.0
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 2.5e-93 346.3 228 75.9
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 2.4e-91 339.7 306 61.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 2.6e-90 336.3 268 64.9
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 6.5e-89 331.6 264 64.4
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 8.5e-89 331.3 248 72.2
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 1.4e-86 323.9 289 58.5
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 1.4e-86 323.9 264 59.1
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 5.7e-85 318.5 242 68.6
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 7.4e-85 318.2 254 67.3
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 1.7e-84 317.0 185 84.9
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 3.6e-79 299.3 315 51.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 5.2e-78 295.4 177 80.8
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.7e-77 292.0 183 78.7
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 4.8e-76 288.9 183 77.6
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 3.7e-68 262.7 185 73.5
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 4.1e-67 259.2 154 80.5
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-65 254.2 170 75.3
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 3.8e-65 252.7 181 71.8
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 3.0e-62 243.0 145 81.4
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 4.2e-56 222.6 260 46.2
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 2.0e-53 213.8 168 66.1
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 4.1e-51 206.1 150 69.3
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 9.2e-51 204.9 121 82.6
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 9.2e-51 204.9 121 82.6
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-49 201.4 119 82.4
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 1.0e-49 201.4 119 81.5
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 8.3e-44 181.8 113 78.8
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 1.8e-43 180.6 108 82.4
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 8.9e-38 161.8 110 74.5
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.7e-36 157.5 270 38.5
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.2e-36 157.1 125 56.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 8.3e-36 155.2 142 55.6
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 5.4e-35 152.5 88 83.0
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 9.2e-35 151.8 168 50.6
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 9.5e-32 141.7 116 62.1
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 2.8e-31 140.2 91 76.9
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.1e-30 138.3 194 42.3
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.5e-29 134.4 77 89.6
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 4.4e-29 132.9 101 66.3
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.8e-22 110.9 69 73.9
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 5.2e-22 109.4 70 77.1
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 1.2e-21 108.2 72 72.2
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 1.1e-19 101.7 70 74.3
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 5.4e-19 99.4 197 39.1
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 55 76.4
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 2.5e-16 90.5 55 76.4
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 3.3e-16 90.1 70 67.1
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 1.3e-12 78.2 46 76.1
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 1.1e-08 65.1 246 24.8
SEGI_40272 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 2.1e-07 60.8 34 79.4
SEGI_21930 Sequoiadendron giganteum HOM05D004449 ORTHO05D386504 9.0e-06 55.5 63 50.8


User provided reference genes

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