Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.4e-122 442.2 223 100.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.0e-96 357.1 210 84.8
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.3e-93 345.9 228 76.3
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.0e-93 345.1 225 78.7
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 5.2e-93 344.7 210 80.5
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 5.7e-92 341.3 227 78.4
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.1e-90 337.0 225 75.1
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 1.8e-90 336.3 222 77.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 3.1e-90 335.5 222 75.7
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 7.0e-90 334.3 208 81.7
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 7.0e-90 334.3 228 77.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 9.1e-90 334.0 228 76.8
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.2e-89 333.6 220 76.8
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.7e-89 332.4 228 76.8
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 3.5e-89 332.0 204 80.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 3.5e-89 332.0 233 74.7
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.0e-88 330.5 235 73.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 1.7e-88 329.7 211 79.1
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.2e-88 329.3 213 76.5
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.9e-88 328.9 232 73.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 2.9e-88 328.9 229 75.1
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 6.5e-88 327.8 238 73.9
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 8.5e-88 327.4 222 75.2
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-87 327.0 233 73.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.5e-87 326.6 217 77.4
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.9e-87 326.2 212 78.3
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-87 325.9 222 74.8
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.5e-87 325.9 222 74.8
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.5e-87 325.9 213 77.0
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 5.5e-87 324.7 223 74.9
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 9.4e-87 323.9 215 75.3
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 9.4e-87 323.9 214 78.0
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 1.2e-86 323.6 211 76.3
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 2.1e-86 322.8 231 72.7
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 2.7e-86 322.4 213 75.1
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 4.7e-86 321.6 202 77.7
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 8.0e-86 320.9 229 72.9
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 8.0e-86 320.9 212 77.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.0e-86 320.9 214 73.4
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.4e-85 320.1 211 74.9
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 2.3e-85 319.3 230 72.6
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 2.3e-85 319.3 224 72.8
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 3.0e-85 318.9 212 76.4
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 6.8e-85 317.8 223 71.3
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 1.2e-84 317.0 228 71.5
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-84 317.0 228 71.5
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-84 317.0 228 71.5
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-84 317.0 228 71.5
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.2e-84 317.0 228 72.4
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.2e-84 317.0 223 74.0
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.5e-84 316.6 214 75.2
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 2.6e-84 315.8 226 71.2
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 2.6e-84 315.8 215 70.7
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 3.4e-84 315.5 212 74.1
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 3.4e-84 315.5 228 71.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 4.4e-84 315.1 216 71.8
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 9.8e-84 313.9 230 71.7
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-83 312.4 213 75.1
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-83 312.4 214 74.3
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.8e-83 312.4 214 73.8
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-83 312.0 233 70.4
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-83 312.0 233 70.4
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.7e-83 312.0 224 69.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 8.3e-83 310.8 213 74.6
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 3.1e-82 308.9 213 73.7
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.4e-82 308.1 212 75.5
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.4e-82 308.1 212 75.5
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 5.4e-82 308.1 214 72.9
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 9.1e-82 307.4 212 72.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 1.2e-81 307.0 213 72.8
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.6e-81 306.6 210 72.9
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 4.5e-81 305.1 210 70.5
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.3e-80 303.5 230 68.3
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.9e-80 302.4 205 74.1
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.5e-80 301.2 225 68.4
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 8.5e-80 300.8 209 73.7
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.5e-80 300.8 205 73.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 1.1e-79 300.4 217 71.0
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 1.1e-79 300.4 201 75.1
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.9e-79 299.7 231 70.1
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 7.2e-79 297.7 202 71.3
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 6.1e-78 294.7 251 66.1
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 8.0e-78 294.3 220 69.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.8e-77 290.8 221 68.8
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 8.8e-77 290.8 191 77.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 1.2e-76 290.4 197 71.6
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 2.0e-76 289.7 221 68.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 2.6e-76 289.3 221 68.8
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.4e-76 288.9 191 77.0
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 1.8e-74 283.1 223 66.8
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.1e-74 282.0 211 68.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 7.0e-74 281.2 207 69.6
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 9.2e-74 280.8 203 70.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 9.2e-74 280.8 231 65.4
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.6e-73 280.0 233 63.5
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.5e-71 273.5 221 65.2
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 1.9e-71 273.1 205 65.9
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 3.3e-71 272.3 224 63.4
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.3e-71 272.3 229 65.1
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 9.5e-71 270.8 208 67.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.8e-70 269.2 208 67.3
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.8e-70 269.2 219 64.4
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 1.0e-69 267.3 208 67.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.8e-69 266.5 225 62.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 1.5e-68 263.5 225 62.2
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 9.8e-68 260.8 224 62.1
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-67 260.4 208 64.9
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 2.2e-67 259.6 224 61.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.9e-67 259.2 224 61.2
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 2.9e-67 259.2 224 61.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 2.9e-67 259.2 224 61.2
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 3.7e-67 258.8 219 64.4
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 4.9e-67 258.5 224 61.2
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 6.4e-67 258.1 229 60.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 6.4e-67 258.1 229 60.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 6.4e-67 258.1 229 60.3
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-66 257.3 226 60.6
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 1.1e-66 257.3 229 60.7
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 2.4e-66 256.1 204 67.6
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 7.0e-66 254.6 215 59.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.2e-65 253.8 229 60.3
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 5.9e-65 251.5 221 59.7
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 5.9e-65 251.5 226 65.5
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.5e-63 246.9 142 81.7
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 8.0e-62 241.1 215 62.3
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 8.3e-59 231.1 214 57.5
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.5e-57 225.7 212 54.2
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.1e-55 220.7 185 63.2
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.0e-53 212.2 169 63.3
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 3.4e-52 209.1 197 58.4
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 2.2e-51 206.5 214 54.7
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 1.4e-50 203.8 120 83.3
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.2e-49 200.7 141 76.6
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 6.8e-45 184.9 120 68.3
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.2e-44 184.1 204 53.9
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.7e-41 172.9 101 78.2
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 6.0e-41 171.8 108 69.4
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.5e-39 167.2 104 75.0
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 5.8e-20 102.1 62 75.8
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 1.6e-17 94.0 80 57.5
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 8.7e-08 61.6 150 28.0
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.3e-07 59.7 104 30.8
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 3.3e-07 59.7 104 30.8


User provided reference genes

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