Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 9.2e-99 363.6 191 100.0
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 9.1e-30 134.4 155 54.8
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 4.5e-29 132.1 189 49.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.7e-28 130.2 180 49.4
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.4e-27 127.1 153 51.6
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.1e-26 123.2 187 45.5
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 6.1e-26 121.7 183 47.5
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 2.3e-25 119.8 156 51.9
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 5.2e-25 118.6 184 46.7
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.7e-24 114.4 170 48.2
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 1.3e-23 114.0 176 45.5
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 1.3e-23 114.0 182 46.7
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 4.8e-23 112.1 168 48.2
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 8.2e-23 111.3 166 45.2
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.2e-23 111.3 189 44.4
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.1e-22 110.9 170 47.6
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 1.8e-22 110.2 138 54.3
CSS0008181 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 2.4e-22 109.8 160 45.0
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 3.1e-22 109.4 96 64.6
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 4.1e-22 109.0 84 67.9
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 4.1e-22 109.0 98 68.4
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 7.0e-22 108.2 176 41.5
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 9.1e-22 107.8 167 45.5
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 1.6e-21 107.1 160 41.2
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 2.6e-21 106.3 96 64.6
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 2.6e-21 106.3 93 65.6
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 3.5e-21 105.9 164 47.6
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 3.5e-21 105.9 164 45.7
CSS0000366 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 4.5e-21 105.5 160 44.4
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.5e-21 105.5 84 71.4
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.9e-21 105.1 92 60.9
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.3e-20 104.0 81 69.1
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 1.7e-20 103.6 96 69.8
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 3.8e-20 102.4 152 44.7
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 3.8e-20 102.4 163 48.5
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 5.0e-20 102.1 178 42.1
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 6.5e-20 101.7 89 62.9
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 8.5e-20 101.3 87 64.4
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 8.5e-20 101.3 92 58.7
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 8.5e-20 101.3 177 43.5
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 8.5e-20 101.3 167 46.7
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 1.1e-19 100.9 177 41.2
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.5e-19 100.5 175 40.0
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.5e-19 100.5 81 64.2
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 1.5e-19 100.5 158 48.1
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.5e-19 100.5 172 42.4
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.9e-19 100.1 114 57.9
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 2.5e-19 99.8 102 57.8
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 4.2e-19 99.0 114 52.6
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.2e-19 99.0 114 52.6
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 7.2e-19 98.2 165 43.6
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 9.4e-19 97.8 84 65.5
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.2e-18 97.4 149 43.0
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 1.6e-18 97.1 130 50.8
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 2.1e-18 96.7 174 39.1
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 2.7e-18 96.3 144 43.8
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 3.6e-18 95.9 177 42.4
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 6.1e-18 95.1 110 51.8
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 8.0e-18 94.7 106 61.3
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 1.0e-17 94.4 151 45.0
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 5.2e-17 92.0 107 59.8
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 5.2e-17 92.0 83 61.4
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 5.2e-17 92.0 106 56.6
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 6.7e-17 91.7 153 43.8
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 8.8e-17 91.3 95 50.5
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 8.8e-17 91.3 87 56.3
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 8.8e-17 91.3 143 43.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 1.5e-16 90.5 170 38.8
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.0e-16 90.1 172 39.5
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.0e-16 90.1 101 55.4
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 2.6e-16 89.7 82 58.5
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 3.3e-16 89.4 69 69.6
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 4.4e-16 89.0 189 40.7
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 4.4e-16 89.0 175 39.4
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 7.5e-16 88.2 171 40.9
MBI05_g16176_MAGBIO Magnolia biondii HOM05D004973 ORTHO05D006119 7.5e-16 88.2 68 66.2
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 9.7e-16 87.8 100 54.0
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 1.3e-15 87.4 102 55.9
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 1.3e-15 87.4 72 66.7
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.3e-15 87.4 112 50.0
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 1.7e-15 87.0 101 57.4
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 1.7e-15 87.0 109 51.4
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 1.7e-15 87.0 111 54.1
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 2.2e-15 86.7 138 41.3
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 2.8e-15 86.3 83 54.2
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 1.1e-14 84.3 110 54.5
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 1.4e-14 84.0 102 54.9
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.4e-14 84.0 181 40.3
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 1.8e-14 83.6 105 54.3
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 1.2e-13 80.9 72 63.9
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 2.0e-13 80.1 96 52.1
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.0e-13 80.1 175 37.1
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 2.7e-13 79.7 111 47.7
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 2.7e-13 79.7 111 47.7
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 3.5e-13 79.3 87 59.8
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 4.5e-13 79.0 69 60.9
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 4.5e-13 79.0 109 50.5
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 4.5e-13 79.0 99 54.5
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 5.9e-13 78.6 160 37.5
Actinidia19731 Actinidia chinensis HOM05D004973 ORTHO05D006119 7.7e-13 78.2 176 38.6
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 7.7e-13 78.2 66 62.1
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 7.7e-13 78.2 66 62.1
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 7.7e-13 78.2 56 71.4
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 7.7e-13 78.2 94 55.3
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 7.7e-13 78.2 90 54.4
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 1.7e-12 77.0 90 54.4
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 2.2e-12 76.6 88 51.1
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 3.8e-12 75.9 111 45.9
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 5.0e-12 75.5 64 64.1
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 5.0e-12 75.5 172 35.5
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 8.5e-12 74.7 92 51.1
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 8.5e-12 74.7 82 54.9
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-11 74.3 147 38.8
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 1.1e-11 74.3 94 50.0
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.1e-11 74.3 88 50.0
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 1.9e-11 73.6 168 36.9
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.5e-11 73.2 169 37.3
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 4.2e-11 72.4 114 42.1
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 4.2e-11 72.4 83 47.0
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 4.2e-11 72.4 160 40.0
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 5.5e-11 72.0 73 57.5
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 5.5e-11 72.0 73 57.5
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 9.4e-11 71.2 71 56.3
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 3.6e-10 69.3 160 38.8
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.4e-09 67.4 108 45.4
RhsimUnG0120900 Rhododendron simsii HOM05D004973 ORTHO05D006119 1.5e-08 63.9 40 80.0
ATR0594G102 Amborella trichopoda HOM05D004973 ORTHO05D006119 2.6e-08 63.2 179 33.0
arahy.Tifrunner.gnm1.ann1.X85SHR Arachis hypogaea HOM05D004973 ORTHO05D006119 2.6e-08 63.2 86 44.2
EL10Ac7g17266 Beta vulgaris HOM05D004973 ORTHO05D006119 9.8e-08 61.2 171 33.3
arahy.Tifrunner.gnm1.ann1.4HMS3J Arachis hypogaea HOM05D004973 ORTHO05D006119 1.3e-07 60.8 79 44.3
Sed0025194 Sechium edule HOM05D004973 ORTHO05D006119 1.3e-07 60.8 87 48.3
ClCG10G020720 Citrullus lanatus HOM05D004973 ORTHO05D006119 3.7e-07 59.3 85 44.7
Sed0020255 Sechium edule HOM05D004973 ORTHO05D006119 3.7e-07 59.3 114 38.6
Ah.15g091990 Amaranthus hybridus HOM05D004973 ORTHO05D006119 4.1e-06 55.8 97 44.3
SEGI_03290 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 5.4e-06 55.5 87 43.7


User provided reference genes

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