Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.8e-34 148.7 72 100.0
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 1.2e-30 136.0 72 90.3
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 1.4e-28 129.0 74 86.5
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 4.2e-28 127.5 70 84.3
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 5.5e-28 127.1 73 86.3
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 9.3e-28 126.3 73 84.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 9.3e-28 126.3 72 81.9
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.2e-27 125.9 73 84.9
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 81.4
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.6e-27 125.6 70 81.4
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 1.6e-27 125.6 73 84.9
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.1e-27 125.2 73 82.2
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.7e-27 124.8 73 86.3
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.5e-27 124.4 74 82.4
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.5e-27 124.4 74 82.4
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.5e-27 124.4 74 82.4
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.5e-27 124.4 74 82.4
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.5e-27 124.4 74 82.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 4.6e-27 124.0 73 83.6
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 4.6e-27 124.0 73 84.9
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 4.6e-27 124.0 70 80.0
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 6.0e-27 123.6 73 83.6
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 6.0e-27 123.6 74 82.4
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 7.9e-27 123.2 73 80.8
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 7.9e-27 123.2 72 79.2
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 7.9e-27 123.2 74 82.4
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 7.9e-27 123.2 71 84.5
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-26 122.5 74 82.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.8e-26 122.1 70 80.0
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 81.1
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 1.8e-26 122.1 74 79.7
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.8e-26 122.1 70 78.6
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.8e-26 122.1 73 82.2
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 82.2
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 83.6
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 2.3e-26 121.7 73 82.2
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 84.5
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 84.5
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-26 121.7 71 84.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 2.3e-26 121.7 70 81.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 82.2
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 3.0e-26 121.3 73 82.2
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 83.1
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 83.1
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 78.9
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 5.1e-26 120.6 71 83.1
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 6.7e-26 120.2 73 80.8
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.7e-26 119.8 70 78.6
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 83.1
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.7e-26 119.8 73 80.8
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 8.7e-26 119.8 70 78.6
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 8.7e-26 119.8 73 78.1
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 8.7e-26 119.8 71 83.1
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.5e-25 119.0 74 77.0
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.5e-25 119.0 74 77.0
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 82.2
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 1.5e-25 119.0 70 77.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.5e-25 119.0 73 79.5
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.9e-25 118.6 71 78.9
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.5e-25 118.2 73 76.7
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.5e-25 118.2 73 79.5
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 4.3e-25 117.5 71 76.1
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 4.3e-25 117.5 71 77.5
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 5.7e-25 117.1 67 80.6
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 5.7e-25 117.1 74 77.0
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 5.7e-25 117.1 73 79.5
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 7.4e-25 116.7 73 75.3
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 9.6e-25 116.3 73 78.1
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 9.6e-25 116.3 76 78.9
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 9.6e-25 116.3 65 83.1
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 9.6e-25 116.3 74 71.6
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 9.6e-25 116.3 74 71.6
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.6e-24 115.5 73 79.5
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.6e-24 115.5 75 72.0
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 1.6e-24 115.5 71 78.9
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.1e-24 115.2 73 79.5
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.1e-24 115.2 73 79.5
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 77.5
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.8e-24 114.8 71 77.5
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 2.8e-24 114.8 68 76.5
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 2.8e-24 114.8 65 80.0
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.8e-24 114.8 73 76.7
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 3.7e-24 114.4 65 78.5
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.7e-24 114.4 67 77.6
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 3.7e-24 114.4 73 75.3
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 4.8e-24 114.0 73 75.3
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.8e-24 114.0 71 76.1
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 6.2e-24 113.6 74 75.7
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 6.2e-24 113.6 71 77.5
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 1.1e-23 112.8 73 76.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.4e-23 112.5 74 71.6
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.4e-23 112.5 73 78.1
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.8e-23 112.1 97 61.9
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.8e-23 112.1 73 75.3
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.4e-23 111.7 73 76.7
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 3.1e-23 111.3 70 72.9
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 4.0e-23 110.9 101 58.4
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 5.3e-23 110.5 62 79.0
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 6.9e-23 110.2 65 78.5
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.5e-22 109.0 69 75.4
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.5e-22 109.0 73 75.3
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 1.5e-22 109.0 63 77.8
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 2.6e-22 108.2 73 72.6
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 2.6e-22 108.2 73 72.6
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 4.5e-22 107.5 61 78.7
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 7.6e-22 106.7 73 72.6
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 7.6e-22 106.7 73 72.6
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 7.6e-22 106.7 73 72.6
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 7.6e-22 106.7 74 70.3
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 7.6e-22 106.7 73 72.6
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.0e-21 106.3 70 74.3
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.0e-21 106.3 73 72.6
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.3e-21 105.9 70 70.0
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 1.3e-21 105.9 65 76.9
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.7e-21 105.5 90 62.2
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 2.2e-21 105.1 55 87.3
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 2.2e-21 105.1 95 58.9
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.2e-21 105.1 79 69.6
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 73 68.5
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 2.9e-21 104.8 72 66.7
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 2.9e-21 104.8 63 79.4
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 3.8e-21 104.4 67 71.6
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 8.4e-21 103.2 55 85.5
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 77.8
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 1.1e-20 102.8 62 80.6
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.1e-20 102.8 63 73.0
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-20 102.4 63 77.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 1.4e-20 102.4 63 77.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 1.4e-20 102.4 63 77.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 1.4e-20 102.4 63 77.8
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-20 102.4 63 77.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 1.9e-20 102.1 63 77.8
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 3.2e-20 101.3 67 68.7
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 4.2e-20 100.9 94 56.4
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 7.1e-20 100.1 55 80.0
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 1.2e-19 99.4 61 72.1
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 1.6e-19 99.0 56 83.9
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.1e-19 98.6 83 63.9
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.5e-19 97.8 56 82.1
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 6.1e-19 97.1 66 69.7
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 6.1e-19 97.1 66 69.7
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 1.0e-18 96.3 66 72.7
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 2.3e-18 95.1 57 77.2
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 3.0e-18 94.7 57 80.7
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.9e-18 94.4 66 63.6
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 3.9e-18 94.4 67 62.7
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 8.7e-18 93.2 56 82.1
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 8.7e-18 93.2 55 76.4
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.1e-17 92.8 69 65.2
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 1.5e-17 92.4 53 79.2
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 1.5e-17 92.4 56 80.4
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.9e-17 92.0 56 75.0
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 4.3e-17 90.9 56 76.8
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 75 60.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.2e-16 88.6 66 65.2
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.8e-16 88.2 50 78.0
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 2.8e-16 88.2 89 49.4
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.8e-16 87.4 55 72.7
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.8e-16 87.4 67 55.2
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.8e-15 85.5 62 58.1
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 6.9e-15 83.6 56 73.2
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 2.0e-14 82.0 56 69.6
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 7.7e-14 80.1 56 71.4
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.0e-13 79.7 49 75.5
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 1.7e-13 79.0 58 62.1
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.9e-13 78.2 51 68.6
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 5.0e-13 77.4 50 64.0
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.4e-12 75.9 40 85.0
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.2e-12 74.3 52 67.3
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 9.4e-12 73.2 51 60.8
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.8e-10 68.9 38 76.3
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-10 68.2 51 62.7
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.0e-10 68.2 51 62.7
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 6.7e-10 67.0 42 81.0
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 8.8e-10 66.6 41 80.5
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 3.3e-09 64.7 34 82.4
MCO16G664 Micromonas commoda HOM05D003756 ORTHO05D004304 3.1e-07 58.2 51 51.0
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 4.5e-06 54.3 40 67.5
PRCOL_00006894 Prasinoderma coloniale HOM05D003756 ORTHO05D004304 4.5e-06 54.3 51 45.1


User provided reference genes

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