Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.6e-269 932.2 471 100.0
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 2.1e-269 931.8 470 100.0
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.5e-256 887.9 471 94.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 2.5e-246 855.1 471 90.2
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 3.2e-246 854.7 470 89.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 1.2e-245 852.8 470 89.1
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 1.2e-245 852.8 472 88.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 3.6e-245 851.3 470 90.0
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 1.4e-244 849.4 471 89.2
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 4.0e-244 847.8 470 88.7
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 8.3e-242 840.1 470 87.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 1.8e-241 839.0 472 87.7
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 7.0e-241 837.0 473 88.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 3.5e-240 834.7 473 88.4
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 4.5e-240 834.3 471 87.3
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 1.0e-239 833.2 471 87.9
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 1.3e-239 832.8 471 87.3
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 1.7e-239 832.4 470 87.7
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 2.3e-239 832.0 470 87.2
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 3.8e-239 831.2 471 88.3
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 6.5e-239 830.5 471 87.3
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 8.6e-239 830.1 470 86.8
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 1.9e-238 828.9 471 87.0
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 2.5e-238 828.6 470 86.8
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 5.5e-238 827.4 473 86.9
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 7.2e-238 827.0 471 87.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 9.5e-238 826.6 470 86.0
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 1.6e-237 825.9 476 87.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.6e-237 825.9 470 85.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 1.6e-237 825.9 470 86.8
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 3.6e-237 824.7 472 87.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 3.6e-237 824.7 470 85.5
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 3.6e-237 824.7 470 85.5
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 4.7e-237 824.3 474 86.5
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 6.1e-237 823.9 472 86.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 8.0e-237 823.5 476 87.4
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 8.0e-237 823.5 471 87.0
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.0e-236 823.2 470 85.7
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.0e-236 823.2 472 87.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 1.4e-236 822.8 471 86.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 2.3e-236 822.0 470 86.0
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 2.3e-236 822.0 472 86.7
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 2.3e-236 822.0 473 86.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 5.2e-236 820.8 471 86.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 5.2e-236 820.8 470 85.7
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 1.2e-235 819.7 472 87.5
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 1.5e-235 819.3 471 86.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 1.5e-235 819.3 472 85.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 2.0e-235 818.9 472 86.4
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 2.0e-235 818.9 470 86.2
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 2.6e-235 818.5 472 86.0
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 3.4e-235 818.1 472 85.8
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 3.4e-235 818.1 472 85.6
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 7.5e-235 817.0 471 85.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 9.8e-235 816.6 470 85.7
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 9.8e-235 816.6 470 86.6
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 9.8e-235 816.6 472 86.7
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 1.3e-234 816.2 471 86.0
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 1.3e-234 816.2 470 86.0
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 2.8e-234 815.1 470 85.7
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 3.7e-234 814.7 472 85.4
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 4.9e-234 814.3 473 85.6
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 1.1e-233 813.1 470 85.5
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 1.4e-233 812.8 471 85.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 1.8e-233 812.4 472 85.8
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 5.4e-233 810.8 470 84.9
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 5.4e-233 810.8 471 84.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 1.6e-232 809.3 465 87.3
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 6.6e-231 803.9 465 85.6
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 1.1e-230 803.1 454 87.9
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 1.1e-230 803.1 454 87.4
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 7.3e-230 800.4 471 84.9
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 1.2e-229 799.7 465 84.9
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 1.6e-229 799.3 471 83.9
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 1.0e-228 796.6 471 82.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 1.4e-228 796.2 474 82.5
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 1.4e-228 796.2 474 82.5
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 1.8e-228 795.8 471 84.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 2.3e-228 795.4 471 83.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 2.3e-228 795.4 471 82.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 1.7e-226 789.3 472 83.1
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 1.8e-225 785.8 466 83.9
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 1.8e-225 785.8 472 82.8
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 1.2e-224 783.1 473 83.1
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 2.3e-223 778.9 423 89.8
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 4.3e-222 774.6 472 81.4
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 7.3e-222 773.9 472 81.4
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 1.2e-221 773.1 472 82.2
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 8.0e-221 770.4 473 81.0
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 2.2e-218 762.3 425 87.5
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 2.9e-218 761.9 472 81.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 2.9e-218 761.9 472 81.4
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 2.9e-218 761.9 473 81.4
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.4e-218 760.8 471 81.5
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 7.0e-217 757.3 473 80.3
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 9.2e-217 756.9 472 81.1
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 9.2e-217 756.9 472 81.1
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 1.2e-216 756.5 473 80.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 3.5e-216 755.0 472 80.7
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 6.0e-216 754.2 472 80.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 3.0e-215 751.9 465 81.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 8.6e-215 750.4 474 80.2
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 8.6e-215 750.4 474 80.2
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 1.1e-214 750.0 474 80.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 1.1e-209 733.4 411 87.1
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 3.5e-208 728.4 471 78.6
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 6.0e-208 727.6 470 78.5
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 1.6e-205 719.5 470 77.0
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 1.8e-204 716.1 470 78.7
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 1.1e-201 706.8 426 80.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 2.4e-201 705.7 471 74.5
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 2.8e-189 665.6 420 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 4.2e-185 651.7 433 73.7
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 7.1e-185 651.0 427 73.8
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 2.7e-184 649.0 432 73.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 2.7e-184 649.0 432 73.6
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 3.5e-184 648.7 426 73.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 3.7e-173 612.1 411 76.6
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 6.7e-159 564.7 299 91.3
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 1.1e-156 557.4 414 65.7
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 1.4e-153 547.0 435 62.8
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.4e-153 547.0 418 64.4
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.9e-66 256.5 147 85.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 7.4e-57 225.7 120 88.3
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.9e-45 187.2 101 87.1
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.8e-42 177.9 197 53.8
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 4.2e-36 156.8 106 72.6
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.9e-29 134.0 386 29.5
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.5e-25 121.7 420 27.6
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.1e-20 105.5 60 85.0


User provided reference genes

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