Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0710 Trochodendron aralioides HOM05D000764 ORTHO05D004953 0.0e+00 2356.6 1197 100.0
Dinv33723 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1700.3 1211 73.9
Dinv06519 Davidia involucrata HOM05D000764 ORTHO05D004953 0.0e+00 1668.7 1186 73.7
GSVIVG01025465001 Vitis vinifera HOM05D000764 ORTHO05D004953 0.0e+00 1627.5 1187 72.5
CSS0037597 Camellia sinensis var. sinensis HOM05D000764 ORTHO05D004953 0.0e+00 1610.1 1187 71.9
Cfa009565 Carpinus fangiana HOM05D000764 ORTHO05D004953 0.0e+00 1592.8 1185 71.0
CiPaw.13G176800 Carya illinoinensis HOM05D000764 ORTHO05D004953 0.0e+00 1566.2 1187 70.6
QL01p009034 Quercus lobata HOM05D000764 ORTHO05D004953 0.0e+00 1543.9 1209 68.9
Nn7g35865 Nelumbo nucifera HOM05D000764 ORTHO05D004953 0.0e+00 1542.7 1195 69.1
Atru.chr3.2095 Acer truncatum HOM05D000764 ORTHO05D004953 0.0e+00 1518.8 1231 67.4
Manes.14G121800 Manihot esculenta HOM05D000764 ORTHO05D004953 0.0e+00 1496.1 1188 68.7
Aqoxy3G01104 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 0.0e+00 1493.4 1187 67.5
Ciclev10014014m.g Citrus clementina HOM05D000764 ORTHO05D004953 0.0e+00 1493.0 1186 67.5
Haze_22943 Corylus avellana HOM05D000764 ORTHO05D004953 0.0e+00 1491.1 1293 64.0
Thecc.05G133300 Theobroma cacao HOM05D000764 ORTHO05D004953 0.0e+00 1491.1 1193 68.2
TWI32G0740 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1483.0 1186 68.3
Duzib128G0342 Durio zibethinus HOM05D000764 ORTHO05D004953 0.0e+00 1478.4 1189 67.8
Potri.001G004200 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1471.1 1188 67.4
TWI60G0851 Tripterygium wilfordii HOM05D000764 ORTHO05D004953 0.0e+00 1465.3 1186 67.5
Potri.003G220800 Populus trichocarpa HOM05D000764 ORTHO05D004953 0.0e+00 1458.0 1188 66.4
MBI11_g24613_MAGBIO Magnolia biondii HOM05D000764 ORTHO05D004953 0.0e+00 1454.1 1179 65.8
RcHm_v2.0_Chr5g0083741 Rosa chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1446.8 1185 66.4
Prupe.6G003600 Prunus persica HOM05D000764 ORTHO05D004953 0.0e+00 1441.0 1187 66.7
Lj6g0018726 Lotus japonicus HOM05D000764 ORTHO05D004953 0.0e+00 1421.4 1187 64.6
FvH4_3g45550 Fragaria vesca HOM05D000764 ORTHO05D004953 0.0e+00 1416.7 1187 65.2
MD03G1004100 Malus domestica HOM05D000764 ORTHO05D004953 0.0e+00 1416.7 1190 64.7
Glyma.18G000100 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1415.2 1189 64.9
FAN11G0762 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1405.6 1202 64.2
Gohir.D08G248200 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1397.9 1194 64.6
Gohir.A08G227900 Gossypium hirsutum HOM05D000764 ORTHO05D004953 0.0e+00 1397.5 1185 64.6
Gorai.004G264800 Gossypium raimondii HOM05D000764 ORTHO05D004953 0.0e+00 1397.1 1185 64.9
CANSAT11G1226 Cannabis sativa HOM05D000764 ORTHO05D004953 0.0e+00 1391.7 1188 63.7
Phvul.001G269300 Phaseolus vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1391.7 1188 63.3
arahy.Tifrunner.gnm1.ann1.W7TQKX Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1389.4 1183 63.3
arahy.Tifrunner.gnm1.ann1.ML2TY5 Arachis hypogaea HOM05D000764 ORTHO05D004953 0.0e+00 1384.0 1183 63.2
CAN.G1237.43 Capsicum annuum HOM05D000764 ORTHO05D004953 0.0e+00 1375.9 1191 64.1
Sopen04g010120 Solanum pennellii HOM05D000764 ORTHO05D004953 0.0e+00 1370.5 1189 64.0
Solyc04g039950.4 Solanum lycopersicum HOM05D000764 ORTHO05D004953 0.0e+00 1368.2 1190 63.9
PSO339G2492 Papaver somniferum HOM05D000764 ORTHO05D004953 0.0e+00 1363.6 1190 64.0
FAN21G0270 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1354.0 1229 62.0
FAN25G3812 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1352.8 1195 63.2
Lalb_Chr23g0278471 Lupinus albus HOM05D000764 ORTHO05D004953 0.0e+00 1350.9 1190 62.4
Glyma.11G256800 Glycine max HOM05D000764 ORTHO05D004953 0.0e+00 1346.6 1189 63.0
PGR119G0322 Punica granatum HOM05D000764 ORTHO05D004953 0.0e+00 1345.1 1198 62.6
CsaV3_1G041680 Cucumis sativus L. HOM05D000764 ORTHO05D004953 0.0e+00 1338.9 1186 62.6
FAN16G0168 Fragaria x ananassa HOM05D000764 ORTHO05D004953 0.0e+00 1335.9 1206 61.9
Ca_16376_v3 Cicer arietinum L. HOM05D000764 ORTHO05D004953 0.0e+00 1333.9 1184 62.5
Eucgr.J01768 Eucalyptus grandis HOM05D000764 ORTHO05D004953 0.0e+00 1333.5 1187 63.6
Sabra01G0002900 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1331.6 1255 60.6
TPR.G19327 Trifolium pratense HOM05D000764 ORTHO05D004953 0.0e+00 1330.9 1194 61.8
Sc21g0002730 Simmondsia chinensis HOM05D000764 ORTHO05D004953 0.0e+00 1324.3 1184 60.5
Cc01_g00030 Coffea canephora HOM05D000764 ORTHO05D004953 0.0e+00 1319.7 1198 61.9
Sed0024847 Sechium edule HOM05D000764 ORTHO05D004953 0.0e+00 1316.2 1186 61.5
Rhsim03G0149100 Rhododendron simsii HOM05D000764 ORTHO05D004953 0.0e+00 1315.8 1195 61.6
Hund07595 Selenicereus undatus HOM05D000764 ORTHO05D004953 0.0e+00 1298.9 1188 60.9
DCAR_029576 Daucus carota HOM05D000764 ORTHO05D004953 0.0e+00 1297.7 1196 60.5
ClCG03G014510 Citrullus lanatus HOM05D000764 ORTHO05D004953 0.0e+00 1294.6 1296 57.9
Sabra03G0164300 Salix brachista HOM05D000764 ORTHO05D004953 0.0e+00 1294.6 1156 63.2
Medtr3g083500 Medicago truncatula HOM05D000764 ORTHO05D004953 0.0e+00 1291.6 1195 60.4
Oeu021897.1 Olea europaea HOM05D000764 ORTHO05D004953 0.0e+00 1280.8 1234 59.6
MSTRG.16793 Avicennia marina HOM05D000764 ORTHO05D004953 0.0e+00 1275.4 1188 60.9
ECA233G5672 Erigeron canadensis HOM05D000764 ORTHO05D004953 0.0e+00 1268.8 1183 60.3
Nitab4.5_0005544g0060 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1260.4 1228 59.4
Migut.L00381 Erythranthe guttata HOM05D000764 ORTHO05D004953 0.0e+00 1252.3 1192 60.1
EL10Ac4g10385 Beta vulgaris HOM05D000764 ORTHO05D004953 0.0e+00 1249.2 1206 57.0
MELO3C015581.2 Cucumis melo HOM05D000764 ORTHO05D004953 0.0e+00 1246.1 1233 58.5
Psat5g101160 Pisum sativum HOM05D000764 ORTHO05D004953 0.0e+00 1234.6 1189 58.7
HanXRQChr13g0405791 Helianthus annuus HOM05D000764 ORTHO05D004953 0.0e+00 1232.2 1186 59.2
Nitab4.5_0000799g0100 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1209.1 1184 57.9
Lsat_1_v5_gn_6_53100 Lactuca sativa HOM05D000764 ORTHO05D004953 0.0e+00 1208.4 1200 57.2
AUR62040904 Chenopodium quinoa HOM05D000764 ORTHO05D004953 0.0e+00 1194.5 1177 56.2
THA.LOC104810327 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1185.6 1182 57.0
Thhalv10011178m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 0.0e+00 1177.9 1187 55.9
CARHR044980 Cardamine hirsuta HOM05D000764 ORTHO05D004953 0.0e+00 1173.3 1186 55.5
AT1G55325 Arabidopsis thaliana HOM05D000764 ORTHO05D004953 0.0e+00 1172.5 1186 55.8
Sp1g41000 Schrenkiella parvula HOM05D000764 ORTHO05D004953 0.0e+00 1166.0 1187 55.6
ATR0490G003 Amborella trichopoda HOM05D000764 ORTHO05D004953 0.0e+00 1162.9 1220 55.6
Carub.0001s4383 Capsella rubella HOM05D000764 ORTHO05D004953 0.0e+00 1160.2 1187 55.3
AL1G63370 Arabidopsis lyrata HOM05D000764 ORTHO05D004953 0.0e+00 1157.9 1189 55.3
Aa31LG10G1120 Aethionema arabicum HOM05D000764 ORTHO05D004953 0.0e+00 1132.9 1188 54.5
BolC6t36790H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1124.8 1203 54.0
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 0.0e+00 1123.6 1320 52.3
A05p17530 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1119.4 1185 54.0
C06p15980 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1113.2 1189 54.0
BraA06t23242Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1112.1 1211 53.8
Nitab4.5_0003134g0150 Nicotiana tabacum HOM05D000764 ORTHO05D004953 0.0e+00 1112.1 1156 56.1
A06p00260 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1107.4 1180 54.5
C06p10270 Brassica napus HOM05D000764 ORTHO05D004953 0.0e+00 1107.4 1179 54.1
BraA05t20647Z Brassica rapa HOM05D000764 ORTHO05D004953 0.0e+00 1106.7 1203 53.2
BolC6t36102H Brassica oleracea HOM05D000764 ORTHO05D004953 0.0e+00 1092.8 1209 53.2
THA.LOC104822680 Tarenaya hassleriana HOM05D000764 ORTHO05D004953 0.0e+00 1083.2 1183 53.0
Peaxi162Scf00970g00016 Petunia axillaris HOM05D000764 ORTHO05D004953 6.8e-309 1064.3 1083 56.9
BcaC08g44192 Brassica carinata HOM05D000764 ORTHO05D004953 1.6e-294 1016.5 1185 51.6
vmacro06919 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 3.1e-293 1012.3 1080 55.1
AUR62019165 Chenopodium quinoa HOM05D000764 ORTHO05D004953 1.4e-261 907.1 1177 47.5
Zm00001eb379470 Zea mays HOM05D000764 ORTHO05D004953 3.2e-258 896.0 1187 47.1
Lj2A763G35 Lonicera japonica HOM05D000764 ORTHO05D004953 2.2e-214 750.4 703 60.7
SEGI_09587 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.8e-209 733.4 1095 44.7
VMungo1080G1230 Vigna mungo HOM05D000764 ORTHO05D004953 2.1e-196 690.6 620 60.3
SalBow6G2556 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.0e-179 635.2 553 61.3
SalBow6G5302 Salvia bowleyana HOM05D000764 ORTHO05D004953 3.3e-178 630.2 635 57.6
Hma1.2p1_0449F.1_g155090 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 2.4e-173 614.0 544 63.8
Migut.L00380 Erythranthe guttata HOM05D000764 ORTHO05D004953 1.3e-166 591.7 631 56.9
SEGI_04814 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 1.6e-164 584.7 797 45.9
CDE10G0477 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 7.6e-159 565.8 787 45.7
Mapoly0029s0052 Marchantia polymorpha HOM05D000764 ORTHO05D004953 1.2e-156 558.5 1309 35.0
Lj2A763G34 Lonicera japonica HOM05D000764 ORTHO05D004953 1.9e-141 508.1 514 57.4
Pp3c11_22280 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.0e-139 502.3 1305 32.9
Pp3c7_4610 Physcomitrium patens HOM05D000764 ORTHO05D004953 1.8e-136 491.5 1294 32.5
AagrBONN_evm.TU.Sc2ySwM_117.2245 Anthoceros agrestis HOM05D000764 ORTHO05D004953 1.1e-125 455.7 1296 32.9
CDE10G0573 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 2.1e-124 451.4 593 46.7
SEGI_19391 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 2.3e-115 421.4 418 53.8
SHI31298 Sapria himalayana HOM05D000764 ORTHO05D004953 2.0e-114 418.3 534 47.2
SalBow6G3750 Salvia bowleyana HOM05D000764 ORTHO05D004953 1.4e-112 412.1 371 62.3
VMungo1080G0389 Vigna mungo HOM05D000764 ORTHO05D004953 2.5e-109 401.4 392 60.2
Os05g0447580 Oryza sativa ssp. japonica HOM05D000764 ORTHO05D004953 5.6e-109 400.2 363 59.2
Actinidia15647 Actinidia chinensis HOM05D000764 ORTHO05D004953 1.1e-99 369.4 220 80.9
vmacro06915 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 2.0e-98 365.2 513 46.0
SMO365G0018 Selaginella moellendorffii HOM05D000764 ORTHO05D004953 5.0e-94 350.5 1131 30.6
Hma1.2p1_0449F.1_g155100 Hydrangea macrophylla HOM05D000764 ORTHO05D004953 1.5e-90 339.0 211 77.7
CAN.G610.44 Capsicum annuum HOM05D000764 ORTHO05D004953 9.2e-80 303.1 296 55.4
VMungo1080G1824 Vigna mungo HOM05D000764 ORTHO05D004953 5.2e-75 287.3 166 83.1
CAN.G1237.45 Capsicum annuum HOM05D000764 ORTHO05D004953 3.3e-69 268.1 423 44.7
COL.COLO4_07282 Corchorus olitorius HOM05D000764 ORTHO05D004953 1.3e-68 266.2 163 77.9
vmacro06920 Vaccinium macrocarpon HOM05D000764 ORTHO05D004953 1.1e-67 263.1 159 77.4
CAN.G1237.21 Capsicum annuum HOM05D000764 ORTHO05D004953 9.0e-67 260.0 271 53.1
CDE10G0100 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 5.4e-64 250.8 336 42.6
SEGI_38078 Sequoiadendron giganteum HOM05D000764 ORTHO05D004953 3.1e-59 235.0 164 68.9
CAN.G1237.46 Capsicum annuum HOM05D000764 ORTHO05D004953 4.2e-56 224.6 239 55.6
Psat6g137480 Pisum sativum HOM05D000493 ORTHO05D004953 7.4e-53 213.8 323 42.1
Cpa.g.sc119.45 Carica papaya HOM05D000764 ORTHO05D004953 9.6e-53 213.4 185 64.9
CDE10G1322 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 3.4e-50 204.9 125 75.2
VMungo1383G3575 Vigna mungo HOM05D000764 ORTHO05D004953 1.0e-49 203.4 400 39.5
Rhsim12G0118500 Rhododendron simsii HOM05D000764 ORTHO05D004953 9.4e-40 170.2 473 34.9
Aqoxy368s001 Aquilegia oxysepala HOM05D000764 ORTHO05D004953 4.2e-32 144.8 243 40.3
CAN.G1237.22 Capsicum annuum HOM05D000764 ORTHO05D004953 9.4e-32 143.7 90 77.8
CAN.G1248.23 Capsicum annuum HOM05D000764 ORTHO05D009197 8.8e-30 137.1 130 60.0
CDE10G0575 Ceratophyllum demersum HOM05D000764 ORTHO05D004953 9.1e-27 127.1 162 46.9
Oeu017835.1 Olea europaea HOM05D000764 ORTHO05D004953 6.1e-23 114.4 109 56.9
Thhalv10012088m.g Eutrema salsugineum HOM05D000764 ORTHO05D004953 3.1e-19 102.1 156 44.9
SHI31299 Sapria himalayana HOM05D000764 ORTHO05D004953 5.3e-19 101.3 139 46.8
SHI31294 Sapria himalayana HOM05D000764 ORTHO05D004953 1.1e-16 93.6 116 46.6
HPP92_009741 Vanilla planifolia HOM05D000764 ORTHO05D004953 1.2e-15 90.1 139 41.7
BcaC03g15090 Brassica carinata HOM05D000951 ORTHO05D032059 1.2e-13 83.6 44 79.5
BolC2t08722H Brassica oleracea HOM05D000951 ORTHO05D032059 1.2e-13 83.6 44 79.5
CBR_g38302 Chara braunii HOM05D000019 ORTHO05D000353 5.9e-10 71.2 76 47.4
SHI31296 Sapria himalayana HOM05D000764 ORTHO05D004953 1.7e-09 69.7 115 36.5
PSO339G0018 Papaver somniferum HOM05D000164 ORTHO05D000096 2.9e-09 68.9 86 48.8
MELO3C030779.2 Cucumis melo HOM05D000764 ORTHO05D004953 6.5e-09 67.8 98 40.8
CAN.G1237.23 Capsicum annuum HOM05D000764 ORTHO05D010647 1.2e-07 63.5 107 42.1
C07p61900 Brassica napus HOM05D000764 ORTHO05D004953 1.8e-06 59.7 36 75.0


User provided reference genes

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