Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 2.5e-164 582.0 289 100.0
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 4.3e-124 448.4 251 88.8
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 8.1e-123 444.1 251 86.5
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.5e-121 439.9 251 86.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 7.6e-121 437.6 253 85.8
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.3e-120 436.8 251 85.7
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 1.4e-119 433.3 263 81.7
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 5.4e-119 431.4 251 84.5
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.1e-119 431.0 251 85.7
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 1.6e-118 429.9 251 84.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 2.7e-118 429.1 250 84.4
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 2.7e-118 429.1 251 82.9
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 7.8e-118 427.6 251 84.9
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.3e-117 426.8 252 85.3
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 5.1e-117 424.9 251 82.1
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 8.7e-117 424.1 251 83.7
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 1.5e-116 423.3 251 82.9
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-116 422.9 250 84.0
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.9e-116 422.9 250 84.0
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.9e-116 422.9 251 83.3
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 5.6e-116 421.4 251 82.5
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 2.1e-115 419.5 257 80.2
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.6e-115 418.7 251 80.9
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.8e-115 418.3 251 82.5
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 4.8e-115 418.3 251 82.1
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 4.8e-115 418.3 251 81.3
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 6.2e-115 417.9 252 82.9
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 8.1e-115 417.5 251 80.9
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.1e-114 417.2 251 81.3
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 1.4e-114 416.8 251 82.5
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.4e-114 416.8 251 82.1
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 3.1e-114 415.6 251 83.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 3.1e-114 415.6 251 80.5
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 4.0e-114 415.2 252 82.1
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 5.3e-114 414.8 251 81.7
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 6.9e-114 414.5 251 81.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 1.2e-113 413.7 251 82.1
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.5e-113 413.3 250 82.4
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 2.0e-113 412.9 251 80.1
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 3.4e-113 412.1 251 81.3
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 3.4e-113 412.1 251 80.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 1.7e-112 409.8 251 80.1
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.4e-111 406.8 251 81.3
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 2.4e-111 406.0 252 79.0
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 4.2e-111 405.2 251 81.7
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 5.4e-111 404.8 251 80.1
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 5.4e-111 404.8 251 81.7
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 7.1e-111 404.4 250 82.0
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-110 403.7 252 80.2
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 1.2e-110 403.7 251 80.9
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 1.6e-110 403.3 251 79.7
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 3.5e-110 402.1 251 79.3
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.6e-110 401.7 251 79.3
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.0e-110 401.4 251 78.9
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 6.0e-110 401.4 259 79.5
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 7.9e-110 401.0 251 79.3
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 1.0e-109 400.6 251 78.9
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 1.0e-109 400.6 250 79.6
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 1.3e-109 400.2 260 76.2
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.8e-109 399.8 252 80.2
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 1.8e-109 399.8 251 78.5
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.8e-109 399.8 251 79.3
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 1.8e-109 399.8 251 78.9
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 2.3e-109 399.4 266 79.3
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 5.1e-109 398.3 251 79.3
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.9e-108 396.4 254 76.4
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 1.9e-108 396.4 251 78.9
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 5.6e-108 394.8 252 78.6
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 7.4e-108 394.4 251 77.3
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 9.6e-108 394.0 251 78.5
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 9.6e-108 394.0 256 75.0
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 1.3e-107 393.7 251 77.7
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.3e-107 393.7 251 78.9
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 1.3e-107 393.7 251 78.5
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 1.6e-107 393.3 249 77.9
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 1.6e-107 393.3 258 77.1
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 1.6e-107 393.3 251 79.7
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 2.1e-107 392.9 252 77.4
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 2.8e-107 392.5 251 78.5
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.8e-107 392.5 253 78.7
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 2.8e-107 392.5 251 76.9
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 4.8e-107 391.7 259 78.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 6.2e-107 391.3 251 77.7
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 8.1e-107 391.0 286 72.4
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.1e-106 390.6 251 77.3
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.8e-106 389.8 251 76.1
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 5.3e-106 388.3 252 78.2
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 6.9e-106 387.9 252 78.6
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 1.2e-105 387.1 258 76.7
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.5e-105 386.7 251 78.5
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.5e-105 385.2 251 75.3
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 1.3e-104 383.6 275 72.4
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 1.7e-104 383.3 251 77.7
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 2.2e-104 382.9 252 79.0
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 2.5e-103 379.4 251 76.9
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 3.2e-103 379.0 252 75.0
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.1e-102 376.3 250 75.6
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 2.7e-102 375.9 292 67.5
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 3.5e-102 375.6 251 75.3
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 1.3e-101 373.6 251 73.3
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.3e-101 372.9 250 74.4
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.0e-101 372.5 253 75.5
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 8.7e-101 370.9 253 73.1
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 8.7e-101 370.9 253 73.1
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 4.3e-100 368.6 251 74.9
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 1.3e-99 367.1 222 80.2
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 6.2e-99 364.8 244 75.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 4.0e-98 362.1 252 73.0
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 5.3e-98 361.7 251 73.3
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 9.0e-98 360.9 251 72.9
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 4.5e-97 358.6 304 64.1
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 1.0e-96 357.5 253 71.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.9e-95 353.2 227 77.5
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 4.2e-95 352.1 253 71.5
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.6e-94 350.1 255 71.4
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 4.6e-94 348.6 252 70.2
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.8e-93 346.7 252 70.6
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 1.8e-93 346.7 235 73.6
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 3.0e-93 345.9 254 69.7
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 8.7e-93 344.4 253 69.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 3.3e-92 342.4 250 69.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 9.7e-92 340.9 252 69.0
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 6.3e-91 338.2 251 70.9
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 1.1e-90 337.4 252 68.3
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 1.1e-90 337.4 252 68.3
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.4e-90 337.0 252 68.3
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 3.1e-90 335.9 231 73.2
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 9.0e-90 334.3 252 68.7
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 9.0e-90 334.3 252 68.7
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 1.5e-89 333.6 259 68.3
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 2.0e-89 333.2 211 80.1
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.4e-89 332.4 251 68.5
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 4.5e-89 332.0 252 70.2
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 5.9e-89 331.6 252 67.9
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 1.7e-88 330.1 252 67.9
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 3.8e-88 328.9 251 67.7
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 1.1e-87 327.4 252 68.3
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 3.2e-87 325.9 271 64.6
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 3.2e-87 325.9 250 67.6
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 3.6e-86 322.4 201 78.1
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 6.9e-82 308.1 201 75.6
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 2.6e-81 306.2 254 65.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.2e-78 297.4 253 61.3
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 1.2e-78 297.4 241 65.6
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.6e-78 297.0 249 61.8
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 8.8e-77 291.2 253 60.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 4.4e-76 288.9 255 59.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.3e-75 287.3 254 59.4
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.7e-75 285.8 189 75.7
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 2.0e-73 280.0 252 58.7
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 5.7e-68 261.9 144 88.2
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-60 237.7 157 73.9
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 3.2e-42 176.4 212 49.5
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 1.3e-40 171.0 232 44.4
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.6e-38 164.1 194 46.4
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.6e-38 162.9 182 51.1
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 6.1e-38 162.2 118 70.3
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.1e-34 151.4 108 71.3
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-31 141.4 93 76.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 9.8e-28 128.3 74 86.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-27 127.1 160 46.2
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.1e-26 122.1 76 80.3
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 4.0e-21 106.3 176 40.9
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 2.1e-17 94.0 147 38.1
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.8e-14 83.6 41 87.8
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 1.8e-13 80.9 112 46.4
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.6e-12 77.0 41 80.5
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 4.4e-12 76.3 53 64.2
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 1.1e-10 71.6 40 80.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 5.4e-10 69.3 43 67.4
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 4.6e-09 66.2 142 35.2
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 7.3e-07 58.9 86 36.0


User provided reference genes

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