Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 8.9e-128 460.3 236 100.0
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.5e-98 363.2 236 75.0
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 7.6e-95 350.9 239 74.5
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 2.1e-92 342.8 212 79.2
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 3.0e-91 339.0 243 70.8
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 4.3e-90 335.1 245 70.2
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 5.7e-90 334.7 221 73.8
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 9.6e-90 334.0 220 76.4
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.3e-89 333.6 220 75.9
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.6e-89 333.2 219 74.9
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.4e-88 329.3 211 76.3
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.2e-87 327.0 216 74.5
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.6e-87 325.9 216 74.5
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.4e-87 325.5 237 67.9
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 4.5e-87 325.1 213 73.2
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 7.6e-87 324.3 211 73.9
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 7.6e-87 324.3 212 75.5
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 1.3e-86 323.6 213 75.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 1.7e-86 323.2 216 73.6
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 2.2e-86 322.8 219 72.6
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 2.2e-86 322.8 211 73.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.9e-86 322.4 217 73.7
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 2.9e-86 322.4 211 73.0
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 6.5e-86 321.2 211 72.5
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.4e-85 320.1 219 72.1
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.5e-85 319.3 216 72.7
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 2.5e-85 319.3 211 71.6
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 7.1e-85 317.8 213 74.6
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 7.1e-85 317.8 212 74.5
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-84 317.0 217 71.9
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.1e-84 316.2 225 68.0
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 2.1e-84 316.2 209 73.2
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 2.1e-84 316.2 209 73.2
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 2.7e-84 315.8 216 72.7
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.7e-84 315.8 211 73.0
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.7e-84 315.8 206 74.3
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.5e-84 315.5 217 71.4
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 4.6e-84 315.1 220 70.5
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 4.6e-84 315.1 215 72.6
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 4.6e-84 315.1 213 73.7
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.6e-84 315.1 218 71.6
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 1.8e-83 313.2 208 73.6
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 3.0e-83 312.4 227 68.3
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.9e-83 312.0 209 71.8
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 8.7e-83 310.8 213 70.4
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.5e-82 310.1 214 70.6
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.5e-82 310.1 209 70.8
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.5e-82 309.3 227 68.3
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.5e-82 309.3 209 70.3
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.5e-82 309.3 208 71.6
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 3.3e-82 308.9 208 73.1
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.3e-82 308.9 209 70.3
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 4.3e-82 308.5 219 70.3
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 5.7e-82 308.1 216 69.0
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 7.4e-82 307.8 211 72.5
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 7.4e-82 307.8 218 69.3
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 9.7e-82 307.4 211 72.5
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 1.6e-81 306.6 209 72.7
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 4.8e-81 305.1 217 69.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 4.8e-81 305.1 210 70.0
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 6.3e-81 304.7 218 69.3
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.4e-80 303.5 237 65.0
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.8e-80 303.1 210 69.5
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 2.4e-80 302.8 220 68.2
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.1e-80 302.0 223 66.8
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 7.7e-79 297.7 218 69.7
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 1.7e-78 296.6 210 70.0
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 3.8e-78 295.4 206 68.9
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 3.8e-78 295.4 217 68.7
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 5.0e-78 295.0 216 67.6
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.3e-75 286.2 214 69.6
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 6.7e-75 284.6 221 64.7
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.3e-73 280.4 223 63.2
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.7e-73 280.0 214 65.9
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 4.8e-73 278.5 243 58.0
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.4e-72 276.9 218 62.8
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.4e-72 276.2 223 61.4
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.5e-71 273.5 218 63.3
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 2.0e-71 273.1 230 59.1
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 3.4e-71 272.3 220 63.2
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 1.7e-70 270.0 209 65.6
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.7e-70 270.0 221 60.6
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.7e-70 270.0 223 61.9
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.7e-70 270.0 221 62.0
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 5.0e-70 268.5 213 63.4
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 6.5e-70 268.1 240 57.9
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.4e-69 266.9 221 59.7
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.5e-69 266.2 260 56.2
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 7.2e-69 264.6 222 60.8
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 7.2e-69 264.6 227 60.8
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 7.2e-69 264.6 227 60.8
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-67 260.4 243 56.8
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 5.9e-63 245.0 220 60.5
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 1.7e-57 226.9 129 80.6
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.8e-57 226.1 226 52.2
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.1e-56 224.2 220 49.1
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 1.6e-55 220.3 129 74.4
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 4.5e-55 218.8 127 78.7
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.0e-54 217.6 127 78.0
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 7.2e-53 211.5 175 62.9
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.0e-51 205.7 166 63.3
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-50 204.1 165 63.0
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 2.0e-50 203.4 171 63.7
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 3.4e-50 202.6 182 59.9
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 6.5e-46 188.3 142 69.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 3.2e-45 186.0 187 54.5
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 3.6e-44 182.6 146 65.1
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 4.0e-43 179.1 104 79.8
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.4e-40 170.6 256 37.9
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.0e-38 164.5 107 72.9
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 5.0e-38 162.2 138 58.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.5e-37 159.8 136 58.1
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 4.4e-34 149.1 137 56.9
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 1.6e-31 140.6 116 61.2
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 5.0e-30 135.6 137 48.2
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.5e-29 134.0 77 79.2
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.6e-29 132.1 134 53.7
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.5e-29 131.3 79 75.9
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-28 131.0 79 78.5
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-28 131.0 78 78.2
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.1e-28 130.2 79 77.2
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.1e-28 130.2 79 77.2
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.6e-28 129.4 78 78.2
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.6e-28 129.4 78 78.2
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 3.7e-25 119.4 72 75.0
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.7e-22 110.5 97 62.9
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-21 107.1 66 71.2
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 3.3e-21 106.3 111 54.1
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 1.6e-20 104.0 83 62.7
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 8.9e-19 98.2 84 65.5
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 9.8e-18 94.7 64 71.9
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 6.4e-17 92.0 85 58.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 3.2e-16 89.7 55 70.9
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 7.1e-16 88.6 58 63.8
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.6e-15 85.9 49 77.6
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 7.8e-15 85.1 74 62.2
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.8e-15 85.1 51 72.5
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.7e-14 84.0 90 50.0
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.9e-13 80.5 84 51.2
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.1e-11 74.7 53 60.4
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 1.8e-11 73.9 183 26.8
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.8e-11 73.9 174 27.0
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 4.0e-11 72.8 175 32.0
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 4.0e-11 72.8 171 27.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 5.2e-11 72.4 168 31.0
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 5.2e-11 72.4 187 26.2
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 1.2e-10 71.2 165 26.7
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.5e-10 70.9 86 43.0
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 4.9e-09 65.9 205 24.4
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.1e-08 64.7 137 30.7
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 1.2e-07 61.2 34 70.6
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 6.0e-07 58.9 67 46.3


User provided reference genes

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