Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.8e-205 718.4 360 100.0
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.7e-170 602.8 360 83.3
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 1.2e-168 596.7 360 83.3
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.8e-167 592.8 361 79.8
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 9.0e-164 580.5 360 78.1
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 3.4e-163 578.6 360 78.6
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.0e-162 577.0 360 78.3
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 2.9e-162 575.5 360 76.7
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 3.8e-162 575.1 360 77.2
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.1e-161 573.5 360 77.2
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 3.2e-161 572.0 360 77.2
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.3e-161 570.5 353 77.9
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 4.6e-160 568.2 354 77.4
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 4.6e-160 568.2 360 77.8
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 4.6e-160 568.2 353 77.6
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 1.0e-159 567.0 359 75.2
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 1.3e-159 566.6 361 76.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 2.3e-159 565.8 360 75.8
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 5.1e-159 564.7 359 77.7
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 6.7e-159 564.3 351 78.9
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 1.1e-158 563.5 360 75.3
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 1.1e-158 563.5 353 76.5
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.9e-158 562.8 359 78.0
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.9e-158 562.8 359 78.0
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 2.5e-158 562.4 360 76.1
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 7.4e-158 560.8 360 76.7
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 9.7e-158 560.5 359 77.2
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 1.6e-157 559.7 360 75.8
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 6.3e-157 557.8 360 73.1
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 5.3e-156 554.7 360 73.9
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.3e-156 554.7 360 73.9
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 1.2e-155 553.5 351 76.6
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 1.2e-155 553.5 351 76.6
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.5e-155 553.1 351 77.5
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.5e-155 553.1 353 75.6
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 2.0e-155 552.7 360 74.7
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 2.6e-155 552.4 351 76.6
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 4.5e-155 551.6 360 72.8
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 7.7e-155 550.8 361 74.8
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.9e-154 548.9 360 73.6
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 2.9e-154 548.9 356 75.6
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 1.4e-153 546.6 353 75.6
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 4.2e-153 545.0 360 72.2
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 5.5e-153 544.7 360 73.9
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 7.2e-153 544.3 353 75.1
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 1.2e-152 543.5 360 74.7
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.7e-152 542.3 360 73.9
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 3.6e-152 542.0 359 72.4
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 6.1e-152 541.2 360 74.2
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 6.1e-152 541.2 353 74.5
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 7.9e-152 540.8 350 73.7
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 2.3e-151 539.3 353 73.9
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.3e-151 539.3 350 73.7
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 2.3e-151 539.3 360 73.1
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 3.9e-151 538.5 360 72.8
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 6.7e-151 537.7 360 72.5
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 6.7e-151 537.7 353 73.4
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 8.8e-151 537.3 352 73.0
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 8.8e-151 537.3 362 72.7
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 8.8e-151 537.3 353 73.4
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 3.3e-150 535.4 360 71.9
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 5.7e-150 534.6 353 73.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 7.4e-150 534.3 373 70.8
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 9.7e-150 533.9 357 73.1
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.3e-149 533.5 360 73.6
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.7e-149 533.1 360 72.8
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 1.7e-149 533.1 360 71.4
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 1.7e-149 533.1 353 73.1
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 1.4e-148 530.0 391 70.3
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 4.1e-148 528.5 360 72.2
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 1.2e-147 526.9 348 74.7
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 2.0e-147 526.2 348 75.0
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 3.4e-147 525.4 353 71.7
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 7.7e-147 524.2 360 71.4
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 1.0e-146 523.9 360 71.9
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 1.3e-146 523.5 360 71.4
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 2.2e-146 522.7 360 72.5
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 5.0e-146 521.5 361 70.9
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 1.4e-145 520.0 360 71.1
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 4.2e-145 518.5 353 73.1
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 4.2e-145 518.5 359 70.2
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 9.4e-145 517.3 359 69.9
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 3.6e-144 515.4 360 70.8
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 4.7e-144 515.0 360 70.3
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.4e-143 513.5 349 71.3
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 3.3e-142 508.8 354 70.1
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 5.7e-142 508.1 359 70.8
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 5.7e-142 508.1 361 69.3
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 7.4e-142 507.7 313 79.2
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 9.7e-142 507.3 354 70.6
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 2.8e-141 505.8 364 68.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 3.7e-141 505.4 349 72.2
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 3.7e-141 505.4 362 69.1
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 4.8e-141 505.0 361 68.7
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 6.3e-141 504.6 364 68.1
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.1e-140 503.8 364 67.9
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 1.4e-140 503.4 360 68.9
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 3.1e-140 502.3 364 68.1
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 5.3e-140 501.5 364 68.1
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.5e-139 500.0 364 68.1
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 2.0e-139 499.6 361 67.9
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 2.6e-139 499.2 361 68.7
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 2.6e-139 499.2 354 68.9
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 2.6e-139 499.2 308 77.9
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 5.9e-139 498.0 364 67.6
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 5.9e-139 498.0 364 67.6
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 5.9e-139 498.0 364 67.6
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.8e-138 495.4 446 59.2
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 8.5e-138 494.2 359 68.2
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 1.5e-137 493.4 359 68.0
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.2e-137 491.1 357 68.3
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 4.7e-136 488.4 355 67.6
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 1.3e-133 480.3 348 67.8
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 2.8e-133 479.2 348 67.8
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.8e-132 476.5 360 64.4
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.6e-131 473.4 359 63.2
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 4.5e-131 471.9 329 71.1
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 4.5e-131 471.9 335 68.7
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 2.9e-130 469.2 361 64.3
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 4.1e-124 448.7 315 70.2
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.7e-123 446.0 353 62.6
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.7e-122 443.4 362 60.2
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 1.8e-111 406.8 358 60.1
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.2e-110 404.1 360 59.4
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.6e-110 402.9 315 62.9
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 5.0e-106 388.7 267 73.0
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 8.3e-93 344.7 219 76.7
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 8.6e-90 334.7 361 50.4
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 9.5e-89 331.3 341 58.1
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.4e-87 327.4 367 48.2
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.5e-86 323.9 219 71.7
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 4.9e-85 318.9 365 48.8
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 9.9e-78 294.7 253 61.7
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 6.0e-75 285.4 372 45.7
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.4e-68 264.2 157 80.9
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 1.4e-68 264.2 173 75.1
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 7.9e-67 258.5 176 71.0
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.1e-66 255.8 394 41.4
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.9e-65 253.8 213 57.7
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.3e-50 204.5 128 75.8
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 6.3e-48 195.7 104 88.5
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 2.2e-45 187.2 132 67.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 7.9e-43 178.7 296 37.2
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 6.7e-42 175.6 107 76.6
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.4e-39 167.9 129 64.3
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 1.2e-38 164.9 106 73.6
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 1.0e-34 151.8 90 78.9
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 1.7e-24 117.9 97 64.9
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 5.2e-18 96.3 84 58.3
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 1.1e-17 95.1 212 33.0
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 8.2e-16 89.0 46 89.1
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 8.2e-16 89.0 70 61.4
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 1.5e-12 78.2 60 66.7


User provided reference genes

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